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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021346 ID=TCONS_00021346|Name=TCONS_00021346|organism=Clytia hemisphaerica|type=transcript|length=885bp
CATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCAATG
TCAATTGgaagttttcttataatttttttggaaagtatGAGCAAATTGGC
AAGTAAAACAAATGCCACTAAACTCAGCAAAATTGCACAAATTGAAAAAG
CAACTTGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGATTTA
ATAGCACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGATTA
CCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACAAGAA
ATTGCAAATCTCCAACAACTTGCAATCTAAATCGAGATGGAAGACTTTGT
GGCAAATGTGAAGAAGGTTACTTCATCAGTTTCTTCAATAATAAATGTAT
CAACATTTCTGAATGTACCAATGAAAGTCAACATTCTTTCTGGAcgctat
ttttcatttcattcatcACTTTGGCTGTGCTGCTAACATTTCTTAAAGAT
CTCATCACTGCTATCAAATGTGCTGGGCCGATCATAATGGTATGTTTAAG
GAAAACTTGCACAAAGAAAAGAGAAGAAGATGCCAACGAGATCGATGAAA
TGGAAGAACTACAAGCAGGAGACAACCGAAGAAGACGTAAAGAGATTTCT
ACTTCATCAATCTTCAATATTTTGGTCTCTTTTTTTCAGTTGAAAGCTTT
GATAACAGTTCAGAGCAATGAGAAAACGTTAATCGATAAACTTATGAACA
TGGATATTATGGTTAAAAGCAGTGGAGCTTTAAATGCACTTTGTCCTTTC
AGGGGGTTTAATGTTGTATGGCGAGAGGTTTTAAACGGATATACGATCCC
ATTTTTATTGTTAATGACTATTGCAAATTTACACT Run BLAST on NCBI protein sequence of TCONS_00021346-protein >TCONS_00021346-protein ID=TCONS_00021346-protein|Name=TCONS_00021346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
STEIVCNRCPSAQYSMSIGSFLIIFLESMSKLASKTNATKLSKIAQIEKA
TCKICPTGSRCPDNDLIARDNFHGFYENKTADYQFLLCPERYCCSSTTRN
CKSPTTCNLNRDGRLCGKCEEGYFISFFNNKCINISECTNESQHSFWTLF
FISFITLAVLLTFLKDLITAIKCAGPIIMVCLRKTCTKKREEDANEIDEM
EELQAGDNRRRRKEISTSSIFNILVSFFQLKALITVQSNEKTLIDKLMNM
DIMVKSSGALNALCPFRGFNVVWREVLNGYTIPFLLLMTIANLH Run BLAST on NCBI transcript from alignment at sc0000385:451188..456996+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021346 ID=TCONS_00021346|Name=TCONS_00021346|organism=Clytia hemisphaerica|type=transcript|length=5809bp|location=Sequence derived from alignment at sc0000385:451188..456996+ (Clytia hemisphaerica)
CATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCAATG
TCAATTGgaagttttcttataatttttttggaaagtatGAGCAAATTGGC
AAGTAAAACAAATGCCACTAAACTCAGCAAAATTGCACAAATTGAAAAAG
CAACTTGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGATTTA
ATAGCACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGATTA
CCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACAAGAA
ATTGCAAATCTCCAACAACTTGCAATCTAAATCGAGATGGAAGACTTTGT
GGCAAATGTGAAGAAGGTTACTTCATCAGTTTCTTCAATAATAAATGTAT
CAACATTTCTGAATGTACCAATGAAAGTCAACATTCTTTCTGGAcgctat
ttttcatttcattcatcACTTTGGCTGTGCTGCTAACATTTCTTAAAGAT
CTCATCACTGCTATCAAATGTGCTGGGCCGATCATAATGGTATGTTTAAG
GTAAGAAAGGATTAAACATTTGCGGAGTTCAAAGGACACGATAGtcacaa
gtttgtaatattCGCGCAATTTTGTAATATTTGTGGAGTGTTGTGATATT
CCAGTTGCACAGTTTTGCGATCAAGAGTTTGCACacttttaagatttaaa
aaaaaacatcaattgttttctgaaacaatgaaaatacaatgatcgctctc
catcgttttatgagtcgtttatccagtgtataataaatctttgatcCTAT
CAAGTAGCacttttaagattttaaaaagtttagTTTTATTCTTTACCTTG
AGGGATTGGATGAGagcagaaaacaatcaaattaACTTTTTAGCATCGCG
AATATACATAGCTGAAAATAATAATTACTTTATTTACCAGCTCCCCAACG
TAACGAAAGAAAGAGACCTCCTTTTTCGTGGCGTTGAACGGAGTTAATCC
GAGCTTTAAGTATTAAAATAAGATATTATCACTCCCGATAATATTGAGAA
TTTTAAAGGATTAAGCCAGCTCTTTGCAAAGTATACTTGTTTTATAACGA
ATGAGAATAAATTTGCACAGAATTCTGTAAGAATAAAGAGTTCTAAGTca
gcattttgatttttggtttaAATAATCTTTTGAATTGGATAATTCGGGTA
AAATTCGGAtaaaagtctgttcacgataagtgtgcactcttttttctttt
gcctataacttttgaaggaattcttcaatttttatacatttggtatcgtt
ggagagatatttgtgagtcgAACAATTTGAAGTagaaaagtctttaaaaa
aattctgaaaacgaagatgaaaatgaagaagaaaaaaatgaagatcttgt
agagaagtgctataactttcattttcactgaagagATTTTGTGATCTTAG
ttggtcatcactgtgaagaaatttcactaaaatatttattcaatgtaaag
ttatgatacaaagttaataagtgattgacactaaaaaacagcagaaaaca
gcgtttttagacgtaaatcagcttataactttgtttgatatcttttgact
gaatgattatttttgagaaattttttcacagtgatgacgttcgatataat
caaggattcacttcattatttctagatatctttgaatctgtacacAATGA
AACACTTTAACtgatttttgacatattttaggggtattttgtggaaacga
tagtttttcgccaaaattaaaattataagaactatattcaagataacaac
tttcctgtcagtttgaatgataaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcaaatacgacagagatagaacagta
gaaattcaaatgttatcattccagccgcggctttcttatactatggtctT
ATGAACTTGTAAgataaaacaaactatataaagtcAAATTAAAATTATTC
TTCTTATATACCCCCATgaaggaaaaattaaatttaccGGTTGCGCCACA
GAAAAACGTTTTTCACTTTAAACAAggtgaataaaaaatttgaaaaatgt
gattttttagtgtttttcagCCTTTTTGAGTGATTTTAGGCCAGAAAATg
agtattttagaaaaaagataatttttgcaatttttctttaaagtagCTTT
CTCGAGTTCGATGGCTTTTAACAAACTGAATCCTTCTCTaacgaaaagaa
aaacttcaacttGAATCAGTCATTTATCAATCTTTTTCCCGTATCTGTTc
gagtagcctggatatccaagctcaaaattttagaaaaaacaaaaattacc
tcaatatacaaagttctaaaattatagagcttggtctccctggagaatga
aagtgaaaacccatgtttcctagccaacccagggcagcaaaacagaaatt
aataaaaagcagtcttacaagatctaaaactattNcaactagactgtgaa
atagtttacagcctggatatccaggctactgtTCGAGTTGTTAGGTATTT
ATAGATTTTATACACAAGCAcatattaaaatatttggttctTTTAAGTTA
ATCCTTCCTCTTTTGAACGAACGCATTAGAGTTTActgggcccccagcgg
tttgcgtgaatgcgtgaatgggcattttcggttgcgtgaatgtgtgaaaa
ttggaaaaaaagtgcgtgaatgtgtgaattgaaaaagcttgcgtgaacgt
gaaaattcactttttgattaagtgaatgcgtgaatctgggctattttgtg
cgtagatacgtgaattttcccttttttccaccaatcatgtgcagttttcc
cgattttccaatgttttactagactggagtcgtttataatgcgtgtaata
ctaacaataccaatactaataataataataataatacgggatttagtttg
tataaacgactggaagaatccggtgtaccagccttatagatacaggggct
agctacgcagaaacttgcgtatcgagaaaacaatttatcaagcaacaaca
aactctcacaacgaaatcaactcaaatgaaaaactttcaatacacaaatc
caggcacattttttttctcaagaattattttgagcgggaaaaaattataa
ttgcaaatattgacacttttcttttgtttggagttagtgcaaaaaggttt
ctagacgactaaaattgttccatttgTGGAATAATTACTTGATTTTATAA
AAGACGTGGATAAATCGCACGTTCAGGAGTGAAACATTGTCAAAAAAAAC
TCaatcaagaaaacaaactgATCGCATTTCGAATTGAGGCGTTCCTCAAC
ACCCAACAGCTAATCATCATCGatcaagaaaacaaacaaatcaCGAATTT
CTATTGCAAAGTATCTCAAAGGTAGGAGGGACAGTAACAGATTGCCTTAA
TTCTAAAACAAACTCATCATCACTATTATTAAACTCAAAATCCTCTGCGA
ACCCCTGAGAACCAAAATTCTATCACAACCGCACCCTATTTTGAGAATAT
CAACCAATAAGATTCAAGCAGTGAAATCCCATTGTTGTTATAAACCAATC
CGATCCAAACACACACCTAGCACGAACAATAACTATTATCTGCACTTATT
GTAATATTGATTAGCATAACTTATAAATAAGCTAAAATGTATTTAAACTG
CGGGTTTATGAATTGTAAATTAGTATTGTAGTTTTACCATCTTGAGATGG
ACATAAACTGTAAATTAAAGAAAGTATATCACAttggagaaaatgaaaat
taaattgtCCAAGTTACTTGCTAAAGTAAGCTAGTTGCCTTAATCTAGGT
GGTTAATAATCATTGCTTTAGAAACTCGAATATAGTTGAATTGCTTATTT
ATGTTTcggacagactttatgttatgattctctatcactgactcttttta
caaagcattgatgacttttttaagttatgttttcaacgacgggaataaaa
atatcaactttgaacttcatccaagatcttggatggtcgtcatggttact
tttgtcttcgttgattgcgctgaatagaatcttgattcgtcggcacagag
catcaatatatgattttgacctgtgctagattttttactttgacatgtga
catttgttttgattttgtatccgctgcatgcagtttgtttacaaatttcg
caagtactgttatgttcCTTTAAATAGTGATTTGTCATAGATGATAATAT
AGCCTATATATTGCCTTGACcatgacctctatgaaacaaaaGTGCGcgat
aaaaaattacaaaagtgcgTAGAAATTATAAAAGTCGCACATAGCAGTAC
CCCTAAACCAAAAGACAATTTTATTCATGGGACAAAAGTTCtctaaatat
atatttttgtgaATTCCATTTTAGGAAAACTTGCACAAAGAAAAGAGAAG
AAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGAGACAAC
CGAAGAAGACGTAAAGAGATTTCTACTTCATCAATCTTCAATATTTTGGT
CTCTTTTTTTCAGTTGAAAGCTTTGATAACAGTTCAGAGCAATGAGAAAA
CGTTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGCAGTGGA
GCTTTAAATGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATGGCGAGA
GGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTATTGCAA
ATTTACACT Coding sequence (CDS) from alignment at sc0000385:451188..456996+ >TCONS_00021346 ID=TCONS_00021346|Name=TCONS_00021346|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000385:451188..456996+ (Clytia hemisphaerica)
TCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCAATGTC
AATTGgaagttttcttataatttttttggaaagtatGAGCAAATTGGCAA
GTAAAACAAATGCCACTAAACTCAGCAAAATTGCACAAATTGAAAAAGCA
ACTTGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGATTTAAT
AGCACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGATTACC
AATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACAAGAAAT
TGCAAATCTCCAACAACTTGCAATCTAAATCGAGATGGAAGACTTTGTGG
CAAATGTGAAGAAGGTTACTTCATCAGTTTCTTCAATAATAAATGTATCA
ACATTTCTGAATGTACCAATGAAAGTCAACATTCTTTCTGGAcgctattt
ttcatttcattcatcACTTTGGCTGTGCTGCTAACATTTCTTAAAGATCT
CATCACTGCTATCAAATGTGCTGGGCCGATCATAATGGTATGTTTAAGGA
AAACTTGCACAAAGAAAAGAGAAGAAGATGCCAACGAGATCGATGAAATG
GAAGAACTACAAGCAGGAGACAACCGAAGAAGACGTAAAGAGATTTCTAC
TTCATCAATCTTCAATATTTTGGTCTCTTTTTTTCAGTTGAAAGCTTTGA
TAACAGTTCAGAGCAATGAGAAAACGTTAATCGATAAACTTATGAACATG
GATATTATGGTTAAAAGCAGTGGAGCTTTAAATGCACTTTGTCCTTTCAG
GGGGTTTAATGTTGTATGGCGAGAGGTTTTAAACGGATATACGATCCCAT
TTTTATTGTTAATGACTATTGCAAATTTACACTCGACAGAAATTGTTTGC
AACAGATGTCCATCAGCTCAATACTCAATGTCAATTGgaagttttcttat
aatttttttggaaagtatGAGCAAATTGGCAAGTAAAACAAATGCCACTA
AACTCAGCAAAATTGCACAAATTGAAAAAGCAACTTGTAAAATCTGCCCA
ACAGGTTCTCGCTGTCCAGATAACGATTTAATAGCACGTGACAATTTCCA
TGGCTTCTATGAAAATAAAACAGCGGATTACCAATTCCTTTTATGTCCCG
AAAGATACTGTTGTTCATCAACTACAAGAAATTGCAAATCTCCAACAACT
TGCAATCTAAATCGAGATGGAAGACTTTGTGGCAAATGTGAAGAAGGTTA
CTTCATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTACCA
ATGAAAGTCAACATTCTTTCTGGAcgctatttttcatttcattcatcACT
TTGGCTGTGCTGCTAACATTTCTTAAAGATCTCATCACTGCTATCAAATG
TGCTGGGCCGATCATAATGGTATGTTTAAGGAAAACTTGCACAAAGAAAA
GAGAAGAAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGA
GACAACCGAAGAAGACGTAAAGAGATTTCTACTTCATCAATCTTCAATAT
TTTGGTCTCTTTTTTTCAGTTGAAAGCTTTGATAACAGTTCAGAGCAATG
AGAAAACGTTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGC
AGTGGAGCTTTAAATGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATG
GCGAGAGGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTA
TTGCAAATTTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021346-exon-sc0000385-1491911889:451188..451737 | TCONS_00021346-exon-sc0000385-1491911889:451188..451737 | Clytia hemisphaerica | exon |
| TCONS_00021346-exon-sc0000385-1510915933:451188..451737 | TCONS_00021346-exon-sc0000385-1510915933:451188..451737 | Clytia hemisphaerica | exon |
| TCONS_00021346-exon-sc0000385-1575043694:451188..451737 | TCONS_00021346-exon-sc0000385-1575043694:451188..451737 | Clytia hemisphaerica | exon |
| TCONS_00021346-exon-sc0000385-1491911889:456662..456996 | TCONS_00021346-exon-sc0000385-1491911889:456662..456996 | Clytia hemisphaerica | exon |
| TCONS_00021346-exon-sc0000385-1510915933:456662..456996 | TCONS_00021346-exon-sc0000385-1510915933:456662..456996 | Clytia hemisphaerica | exon |
| TCONS_00021346-exon-sc0000385-1575043694:456662..456996 | TCONS_00021346-exon-sc0000385-1575043694:456662..456996 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:451188..456996 + |
Blast
The following BLAST results are available for this feature:
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