TCONS_00021389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021389
Unique NameTCONS_00021389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021389 ID=TCONS_00021389|Name=TCONS_00021389|organism=Clytia hemisphaerica|type=transcript|length=2159bp
gttttttcctatttttaccGACTCTTTAGTGAGACTGAAGTTTGGTTATC
TGATTTTTCAACCTATACAGGGACTGCCAttaaaaaggcacccttaaggg
ggGCATATACCCGtatccttctcttgcctaaaTACCCCCCCCCTGAGCTG
CCTTTTTTTGACGAatctcgtgtcatgtctatAATTTAACTCCTCTTATC
TTGACATTAAAGTTTTCCTAATCATCAAGAACTATGGCAAATGTAAAGta
agcgaagcgagaaaaatctaattgcagagccgtctcggacgtcgcagGTC
GCTGGTATGGTATAGTTTTAATGGCGccctttctgatcatttttgccata
ttttaaaaatctctattttcaaaatatggttaaaagatacgtcacctgGG
AGGtgtagagtcaaactttgaagagaactcttccatttaattttgatttc
attgtgttttaagccaccttcccaacatccaaaggactttaaaatgTGTT
CAGCAACAGCTAAAACTACATGCGATGCCGGTTACCGGCTAGTTTAATTA
TAATTACAGAAATTCTCATTTTAAGGATGAAAATCACATAGCTAACCTTT
CTTATTCCTGAGAAAACTTCCTTGGcccttttttctttgaaattgatatc
aCTGGGTATACTTAAACTTATTTACAGATTTAAATAGATTCCTTTTGATA
ATGGCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGCATGATAG
TGCTTGGATACCAATATTAAATTCAGAAAATGTNTTTAAAtagatttctt
ttgataatgGCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGCA
TGATAGTGCTTGGATACCAATATTAAATTCAGAAAATGTTTTGGATTATT
TTTGTCAAAGAAGCAACACCTTTTATGATAAAACATGCAATAATGAACAA
GTAAAAATGCAAAGGCTTGAACCAACTCAATTAGACTATATGACAGGTGT
TGAATACAGACTAATTCATGGTCAAGATCCAATCCTCTATGTCATTAGAA
AACAAATGAGACATTCACCTAATCAAAcTACCCATTTGGCGCTATATTAC
ATCTTGGCTGGTATTGTTTACCAGGCTCCTGATGTCGGATCCATGATCAA
TTCAAGACTTcTGTCCTCAATCCACAAACTGCAATCTGCTTTTGAAGAAG
CACAATCCTACTCTCATTACAATCCATCCAAAGGTTACTGGTGGGTCTTC
AAAGATGGAGAAAATGACAAACCAAAAGCTCCACCTAAGAAGAACAAAGC
CCATGAAGTCAGCTCTCATTTTCAAAGACAACGTGTCGATATGCTCTTAG
CCAACtttgcccaaaattttcctccaaaaatggtccagGAGAAAGAAAAG
AATGACAACTCagAAAGTACGGAAGGTGATTGCAGCAAGtctaaagaaac
aaaaatggaCAGTGATACACCAGACATAAAAATCGAAGCAGCTGAACCTA
TGGAGACGAATGGCAATGATGACAAAAATGCAGTCACTCAACCGCCTTCA
AAGCGAAAGAAAAGAGAATGATAAGATTTTCACATTGGTACTGCAGAAAA
ACTCTACCTGagcttttgaaaagaaaaaagtggtAATTGGCTTATTACCA
GATGTTGCTCTTCCATTGTGTATGGTAAAGCATCGACAATTATACTGGAT
CGACTAGATGCTTTGACTGGCTTCAAAACACCAGGTTAATTGTAGGGCGA
TCGGATTTTCCTTCGACATTATGGTTGGTCTTAACAATATCAAGAGAAGT
CGTTGAATTTGCCAAAACCTATACGTACTTGTGTATGTGGGAACCAGGCT
GGTACGCCTACTGGAAAAGCATCGTGCATCATGAGATCCTGAGTGGTGTC
ATTTGAATACGTTGTTTTAAACTGGAGCTCGAATCGTTGTAGTCAGTTTG
GACTATTATTAATATGGATCGATAAACggcaaaaaataaaaccaattGTG
ACCAAGatagattttgttaaaaaagaatcttgttaatttgtaaattacac
tgtaaatatgatttttttataatgatcAAAAGGGCTTATGATACTCTGAT
ACCGTATAATCAAAGCTTCTTAAAAGGATATTTGAAAGCAATTTTTCATT
TAATGGGAA
Run BLAST on NCBI

protein sequence of TCONS_00021389-protein

>TCONS_00021389-protein ID=TCONS_00021389-protein|Name=TCONS_00021389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MXLNRFLLIMAASSTDNKFSISWHDSAWIPILNSENVLDYFCQRSNTFYD
KTCNNEQVKMQRLEPTQLDYMTGVEYRLIHGQDPILYVIRKQMRHSPNQT
THLALYYILAGIVYQAPDVGSMINSRLLSSIHKLQSAFEEAQSYSHYNPS
KGYWWVFKDGENDKPKAPPKKNKAHEVSSHFQRQRVDMLLANFAQNFPPK
MVQEKEKNDNSESTEGDCSKSKETKMDSDTPDIKIEAAEPMETNGNDDKN
AVTQPPSKRKKRE
Run BLAST on NCBI

transcript from alignment at sc0000385:476686..482861-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021389 ID=TCONS_00021389|Name=TCONS_00021389|organism=Clytia hemisphaerica|type=transcript|length=6176bp|location=Sequence derived from alignment at sc0000385:476686..482861- (Clytia hemisphaerica)
GTTTTTTCCTATTTTTACCGACTCTTTAGTGAGACTGAAGTTTGGTTATC
TGATTTTTCAACCTATACAGGGACTGCCATTAAAAAGGCACCCTTAAGGG
GGGCATATACCCGTATCCTTCTCTTGCCTAAATACCCCCCCCCTGAGCTG
CCTTTTTTTGACGAATCTCGTGTCATGTCTATAATTTAACTCCTCTTATC
TTGACATTAAAGTTTTCCTAATCATCAAGAACTATGGCAAATGTAAAGTA
AGCGAAGCGAGAAAAATCTAATTGCAGAGCCGTCTCGGACGTCGCAGGTC
GCTGGTATGGTATAGTTTTAATGGCGCCCTTTCTGATCATTTTTGCCATA
TTTTAAAAATCTCTATTTTCAAAATATGGTTAAAAGATACGTCACCTGGG
AGGTGTAGAGTCAAACTTTGAAGAGAACTCTTCCATTTAATTTTGATTTC
ATTGTGTTTTAAGCCACCTTCCCAACATCCAAAGGACTTTAAAATGTGTT
CAGCAACAGCTAAAACTACATGCGATGCCGGTTACCGGCTAGTTTAATTA
TAATTACAGAAATTCTCATTTTAAGGATGAAAATCACATAGCTAACCTTT
CTTATTCCTGAGAAAACTTCCTTGGCCCTTTTTTCTTTGAAATTGATATC
ACTGGGTATACTTAAACTTATTTACAGATTTAAATAGATTCCTTTTGATA
ATGGCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGCATGATAG
TGCTTGGATACCAATATTAAATTCAGAAAATGTNTTTAAATAGATTTCTT
TTGATAATGGCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGCA
TGATAGTGCTTGGATACCAATATTAAATTCAGAAAATGTTTTGGATTATT
TTTGTCAAAGAAGCAACACCTTTTATGATAAAACATGCAATAATGAACAA
GTAAAAATGCAAAGGCTTGAACCAACTCAATTAGAGTAAGTTTTAATCTT
CCCTTTGTTCAAACTTCTTTTTTCTTTATTTAACTGTATGAACATATATT
GATATAAAAAAATTTTTAAATTAGCAGCTGATGATTGCCGTGTAAAGACA
TGAAACTCAAAGTACTGAAGAAAATGCAGTAGTTGTTTTTTTCTTGATAA
TAAGAAACGCTCCCTCGATTGAGCACTCTTATAAACATTTAAGCTGAGCA
ACTTGATAACTGTATGAATATATCAGTCTAAACAGGTCTATAAGTCTATT
GTTTCTATCTACTGTAACAACTTGGATACAGTGTGTCCTGAAAAAAGGGA
CAGTTTTTATATAAAGTTTATAAATCCTCATGATTTATGCAAACTTTTTG
ATTTGTATGTCAATGTCCAAAACCTATTCAATCATCTTGGGAATTGAATA
TCTTTTGGTTGATAAACTATAGCCCAGTTTAGATAGTGAGTTTTGAAGAT
TTTATACCTTATTTAAAACTAATTTTTGGGACACTGTATAAATAGATATG
ATTTTCCCACTTTTTGATCATGTATGACAACCAATCCAGACTGAACAGAC
TGATGTCACCGTGCCTTTTTGAAATTAGGCCTGCCAAAACACGTTTTGCC
AAACATATAACGCATTAGCGGGTTCTAATTTTGCTATTTTTGCCGAAAAA
TCTTACAATATGAAAATTAGTTCCCTTGAGGTAGCAATATAGTCAAATGT
TTGTTTGTAATGTGTACACTTTGTGTATCAGATAAAGTGCTGTTTGTTCA
AGAACAAACCTATGACCATAGACAGCAACATGCTATGAAAGGCCCGATTA
AGGGGCAATGATTCTGTTTGTGCAAGTATATAATAATATATTTGATTTCT
TTTCCAGCTATATGACAGGTGTTGAATACAGACTAATTCATGGTCAAGAT
CCAATCCTCTATGTCATTAGAAAACAAATGAGACATTCACCTAATCAAAG
TATATTTAAACTTTTTACCATTCATTATGAAAACCCTGAATAGCAAAAAT
CTTGCAAGAAGTTTGTTACATGCTATAAAGATAATGCAAAATATCAGATA
ATATTGATGTTTGTCCTGTCAGATTGTGTTTTATTAGAAAGAGCCTCGTG
GTGTATTGAGTTACAGGGTTTCAGCCCCACCCCTAAAAAATTTATAAAGC
GGATCCAGGCCTAGTTGTTAGAGGGAGCTGAAATTAGCAGTATGATGATG
TTACCAATTCTTTGAGGGTACGTAGCTGTTCTGATAGAGACTTTGGGGGT
TGTTCCCCAGTATTTTTCTATTGAAACGCAGACAATTCTGCATTCCAGAT
TTCAATTTTCAACTTTGTTCTAAGTCAAAAATTTTGTTTTGATTTGTGGC
TGTCATTTCATAGCACCTTAATCAGACTTTTAGGTTAATGGAAGTACCTA
ACTTGAGGCAAATTTTAAGGGGACCAAAATCATTAGCTGGGTATACCACC
ATGCTTCATTGGGGGAACCTGAAAAGTGTGCTGAAACCATGACTTCTATA
ATAAAAACGATTGGAGCCAACCCAATAAAAAGCAAAATAACTTTTTTTAT
TGGTAAAGAATATTATGAAACGAATGAAAAGGGTATTATCATCGCCATGT
AGTATATAGCTTTAATTTTTTATTTAATTTTTAGCTACCCATTTGGCGCT
ATATTACATCTTGGCTGGTATTGTTTACCAGGCTCCTGATGTCGGATCCA
TGATCAATTCAAGACTTGTAAGAGATTTTGAAAGTGTTTTTAAAAATATC
ACTATTCAACTTGCCTTTTGATTTTAATACTTTTATAAGAAGTTTGAACA
GAAATTGTTTGGATAAAAGAGTCATGTTACGGTAATGAATTTCGAACTGC
TCCTTTTATCTCATTTCTTAAATCCATGCTCATTAATTTGTTAAATCCAT
GAATATATTGTTGGGATTGACTTAGAATGCATGGAAACTTCAATGTTGAC
ATTTTGACCAGGAATTTCATGTTTTCTTGGTCAGCATTCTAAAGTTTTTG
ACATTTCTCTCAAAAAAAAATTCAAATTTGACGTCAACAATTTGGAATTT
CGTTAAAACCCATGAGAATACGATTACAAATCAACTAATGAAATTCGTTT
TTGTTTTTTCCAGCTGTCCTCAATCCACAAACTGCAATCTGCTTTTGAAG
AAGGTATTCATATTTATTTTTAATGGACCACCAGAATTGTGAAAATCTTT
ATCATCGTATTAATTCGAATAAACAGCCCAGGCGTTTTACCTTAATAAGG
GTAAGGTAAGAAATTTCCGTTTTTTTGCGGAACTAATTTTCTTTCATTTT
CGTAGGAGTCTTCGAGAATTACAGTATTTGTGCAACCAATTTTTGTGGTA
GAAAATTAGTTCCTGCGAAAATAGGTTCCACAAAAATCAGTTCCCTTAAG
GTATCTAAATATTTTGGTATGTAGGAGGGGCCTTTAAAAGAAGCCAGCAG
TTTATAATTAATAATCTTCAACCAAGTTTATTTTCAATGTTAAGTGAATG
CTATGTAAACCTTGTTTTGCATTTTTGTTTTCTTGATTGCAAATAGTCAT
TTTAGACATGTAAAAATGGGTCAAAATTAGTTTGAAAGAATACAATTGTA
AGTTATTCAAAGTAATATGGTAATAAGTAGCTGAAGAATTGCCAAATATG
TGAAATTATCAAGCCACTGTATTTACCAACGCTTCAAAAGTGGAGTGTTC
TCAGAAGTAACTTTATTTTTGCAAAAAGATAACAATTGATGGTGCAACTG
CTGATTTCTTGATCTTTATTTTTCATTCTTAGCACAATCCTACTCTCATT
ACAATCCATCCAAAGGTTACTGGTGGGTCTTCAAAGGTTTGTGACTTAAA
AAGCTTTTTCATGTTGTCATCCCAAATTTTAGCTTCTTTTAATTGTTTTA
TTCTAATTTCATGCTCAGATTTAAGAATATTTCTTCTTAAAGCCCTTGTT
TACTACAGTTCATGAAACTACAGTTTATGAAGGTTTTTTTAAATACAACT
GTCCCATAGCTTTTTCAATCAACTGTCTTTTTCCTTTCAATGTCCAATGC
TAATTTGCAAACCAACAAAGAAAGGTGTTCCTCTATTTAAAAGTTGATAA
CTTTTTACAATAATTCTTTATCAATGGCCGTTTTATCAAAGTTAATGAAC
AAAATTTCCAAGGTGTTGATGAGTTAAATTATTGGTAAAAATTTTAGATG
GAGAAAATGACAAACCAAAAGCTCCACCTAAGAAGAACAAAGCCCATGAA
GTCAGCTCTCATTTTCAAAGACAACGTGTCGATATGCTCTTAGCCAACTT
TGCCCAAAATTTTCCTCCAAAAATGGTCCAGGTTAATTATTGTTTCATTT
TTAAGAGTGTCTTCATCTTTTGTTTGCTATTCATAAGTTATTGACATAAC
TCTTCATCATGGACATTATATATACACCCCCTTCTCACAAACCTGGTAGG
ATTTTTTCAGCCAGTGAGGATAGAAATAACGAACTAAAACCTGATGGGGA
TTGATGCTCCCATATTTTTATGGCTGGGAATTTCAATTCTTTTGTTTTCA
AGTCAGAAAATTCATTGGGGATGGGAAAAATAACATAGTGTTTCGCAATG
AGGATCGGTTTGTTTGATTATTTTCAGTGGGGACAAATATTGGAGATTAT
TATCTGATGCGCGTAAATAGCGACACTTGATTGGCTTCTTTACTACGAGA
AAAGATATTGGGCTCGGTGAAGCCTCGTCCAATATCTTTTCTCGCACGCC
CAATATTTTTGCATATTGGATTCGACTTTGTCCAATAATAACTGCTTAAT
ATTATTCCACCGGGGACGATATTTTGGAAAATTTTTCCAGTGGGAAAGGG
GTTCCAGTGTGTTTGTGAGAAGGGGGGTTTATATATCATAAAAGACAAAT
TGGAAATACTATAAAAGACGCGTTAATTTAAGAGAACCTACATGTGCCCT
GTTGGCCAACCCTTACTTCATTTCAGAAGAGTGGAGATTTATAGAAAATA
ATTTACTTATGTTGTAAAATACAAAAAAGTAAAAAAAAATTGATCGAATA
AAAATCAACATAAACGTAACCTGTCTACTTTAATCTCATGTTAGCCATCT
TAAAATTGCTTTCTCTAGCCAGGGTTCTTTAATATTTTTCTCTTGGTTCC
TTCCTTAGGAGAAAGAAAAGAATGACAACTCAGGTTTGATTTTGAAATTT
AAATCGCTTCAACCAAGAAAACTCTTAATAACTTAACTTAATATATTATT
TCATTGTTTTTGTTTCTTCTTGTATCTCTNTTTATTACAAGAATCATGGT
TGAATAACTTAACTTAATATATTTGTTGTTTTTTTATCTTCTTGTATCTC
TTGCCACACTTTTGGACTGGCTTTTGTAAAGTTTTATTAACCTCGGTATT
AATCATTATCAATTAATTATTTTCTACTAGAAAGTACGGAAGGTGATTGC
AGCAAGTCTAAAGAAACAAAAATGGACAGTGATACACCAGACATAAAAAT
CGAAGCAGCTGAACCTATGGAGACGAATGGCAATGATGACAAAAATGCAG
TCACTCAACCGCCTTCAAAGCGAAAGAAAAGAGAATGATAAGATTTTCAC
ATTGGTACTGCAGAAAAACTCTACCTGAGCTTTTGAAAAGAAAAAAGTGG
TAATTGGCTTATTACCAGATGTTGCTCTTCCATTGTGTATGGTAAAGCAT
CGACAATTATACTGGATCGACTAGATGCTTTGACTGGCTTCAAAACACCA
GGTTAATTGTAGGGCGATCGGATTTTCCTTCGACATTATGGTTGGTCTTA
ACAATATCAAGAGAAGTCGTTGAATTTGCCAAAACCTATACGTACTTGTG
TATGTGGGAACCAGGCTGGTACGCCTACTGGAAAAGCATCGTGCATCATG
AGATCCTGAGTGGTGTCATTTGAATACGTTGTTTTAAACTGGAGCTCGAA
TCGTTGTAGTCAGTTTGGACTATTATTAATATGGATCGATAAACGGCAAA
AAATAAAACCAATTGTGACCAAGATAGATTTTGTTAAAAAAGAATCTTGT
TAATTTGTAAATTACACTGTAAATATGATTTTTTTATAATGATCAAAAGG
GCTTATGATACTCTGATACCGTATAATCAAAGCTTCTTAAAAGGATATTT
GAAAGCAATTTTTCATTTAATGGGAA

Coding sequence (CDS) from alignment at sc0000385:476686..482861-

>TCONS_00021389 ID=TCONS_00021389|Name=TCONS_00021389|organism=Clytia hemisphaerica|type=CDS|length=6336bp|location=Sequence derived from alignment at sc0000385:476686..482861- (Clytia hemisphaerica)
AAAGTACGGAAGGTGATTGCAGCAAGTCTAAAGAAACAAAAATGGACAGT
GATACACCAGACATAAAAATCGAAGCAGCTGAACCTATGGAGACGAATGG
CAATGATGACAAAAATGCAGTCACTCAACCGCCTTCAAAGCGAAAGAAAA
GAGAATGAGAGAAAGAAAAGAATGACAACTCAGATGGAGAAAATGACAAA
CCAAAAGCTCCACCTAAGAAGAACAAAGCCCATGAAGTCAGCTCTCATTT
TCAAAGACAACGTGTCGATATGCTCTTAGCCAACTTTGCCCAAAATTTTC
CTCCAAAAATGGTCCAGCACAATCCTACTCTCATTACAATCCATCCAAAG
GTTACTGGTGGGTCTTCAAAGCTGTCCTCAATCCACAAACTGCAATCTGC
TTTTGAAGAAGCTACCCATTTGGCGCTATATTACATCTTGGCTGGTATTG
TTTACCAGGCTCCTGATGTCGGATCCATGATCAATTCAAGACTTCTATAT
GACAGGTGTTGAATACAGACTAATTCATGGTCAAGATCCAATCCTCTATG
TCATTAGAAAACAAATGAGACATTCACCTAATCAAAATGTNTTTAAATAG
ATTTCTTTTGATAATGGCTGCAAGCTCAACAGATAATAAATTTTCTATAT
CATGGCATGATAGTGCTTGGATACCAATATTAAATTCAGAAAATGTTTTG
GATTATTTTTGTCAAAGAAGCAACACCTTTTATGATAAAACATGCAATAA
TGAACAAGTAAAAATGCAAAGGCTTGAACCAACTCAATTAGAAAAGTACG
GAAGGTGATTGCAGCAAGTCTAAAGAAACAAAAATGGACAGTGATACACC
AGACATAAAAATCGAAGCAGCTGAACCTATGGAGACGAATGGCAATGATG
ACAAAAATGCAGTCACTCAACCGCCTTCAAAGCGAAAGAAAAGAGAATGA
GAGAAAGAAAAGAATGACAACTCAGATGGAGAAAATGACAAACCAAAAGC
TCCACCTAAGAAGAACAAAGCCCATGAAGTCAGCTCTCATTTTCAAAGAC
AACGTGTCGATATGCTCTTAGCCAACTTTGCCCAAAATTTTCCTCCAAAA
ATGGTCCAGCACAATCCTACTCTCATTACAATCCATCCAAAGGTTACTGG
TGGGTCTTCAAAGCTGTCCTCAATCCACAAACTGCAATCTGCTTTTGAAG
AAGCTACCCATTTGGCGCTATATTACATCTTGGCTGGTATTGTTTACCAG
GCTCCTGATGTCGGATCCATGATCAATTCAAGACTTCTATATGACAGGTG
TTGAATACAGACTAATTCATGGTCAAGATCCAATCCTCTATGTCATTAGA
AAACAAATGAGACATTCACCTAATCAAAATGTNTTTAAATAGATTTCTTT
TGATAATGGCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGCAT
GATAGTGCTTGGATACCAATATTAAATTCAGAAAATGTTTTGGATTATTT
TTGTCAAAGAAGCAACACCTTTTATGATAAAACATGCAATAATGAACAAG
TAAAAATGCAAAGGCTTGAACCAACTCAATTAGAAAAGTACGGAAGGTGA
TTGCAGCAAGTCTAAAGAAACAAAAATGGACAGTGATACACCAGACATAA
AAATCGAAGCAGCTGAACCTATGGAGACGAATGGCAATGATGACAAAAAT
GCAGTCACTCAACCGCCTTCAAAGCGAAAGAAAAGAGAATGAGAGAAAGA
AAAGAATGACAACTCAGATGGAGAAAATGACAAACCAAAAGCTCCACCTA
AGAAGAACAAAGCCCATGAAGTCAGCTCTCATTTTCAAAGACAACGTGTC
GATATGCTCTTAGCCAACTTTGCCCAAAATTTTCCTCCAAAAATGGTCCA
GCACAATCCTACTCTCATTACAATCCATCCAAAGGTTACTGGTGGGTCTT
CAAAGCTGTCCTCAATCCACAAACTGCAATCTGCTTTTGAAGAAGCTACC
CATTTGGCGCTATATTACATCTTGGCTGGTATTGTTTACCAGGCTCCTGA
TGTCGGATCCATGATCAATTCAAGACTTCTATATGACAGGTGTTGAATAC
AGACTAATTCATGGTCAAGATCCAATCCTCTATGTCATTAGAAAACAAAT
GAGACATTCACCTAATCAAAATGTNTTTAAATAGATTTCTTTTGATAATG
GCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGCATGATAGTGC
TTGGATACCAATATTAAATTCAGAAAATGTTTTGGATTATTTTTGTCAAA
GAAGCAACACCTTTTATGATAAAACATGCAATAATGAACAAGTAAAAATG
CAAAGGCTTGAACCAACTCAATTAGAAAAGTACGGAAGGTGATTGCAGCA
AGTCTAAAGAAACAAAAATGGACAGTGATACACCAGACATAAAAATCGAA
GCAGCTGAACCTATGGAGACGAATGGCAATGATGACAAAAATGCAGTCAC
TCAACCGCCTTCAAAGCGAAAGAAAAGAGAATGAGAGAAAGAAAAGAATG
ACAACTCAGATGGAGAAAATGACAAACCAAAAGCTCCACCTAAGAAGAAC
AAAGCCCATGAAGTCAGCTCTCATTTTCAAAGACAACGTGTCGATATGCT
CTTAGCCAACTTTGCCCAAAATTTTCCTCCAAAAATGGTCCAGCACAATC
CTACTCTCATTACAATCCATCCAAAGGTTACTGGTGGGTCTTCAAAGCTG
TCCTCAATCCACAAACTGCAATCTGCTTTTGAAGAAGCTACCCATTTGGC
GCTATATTACATCTTGGCTGGTATTGTTTACCAGGCTCCTGATGTCGGAT
CCATGATCAATTCAAGACTTCTATATGACAGGTGTTGAATACAGACTAAT
TCATGGTCAAGATCCAATCCTCTATGTCATTAGAAAACAAATGAGACATT
CACCTAATCAAAATGTNTTTAAATAGATTTCTTTTGATAATGGCTGCAAG
CTCAACAGATAATAAATTTTCTATATCATGGCATGATAGTGCTTGGATAC
CAATATTAAATTCAGAAAATGTTTTGGATTATTTTTGTCAAAGAAGCAAC
ACCTTTTATGATAAAACATGCAATAATGAACAAGTAAAAATGCAAAGGCT
TGAACCAACTCAATTAGAAAAGTACGGAAGGTGATTGCAGCAAGTCTAAA
GAAACAAAAATGGACAGTGATACACCAGACATAAAAATCGAAGCAGCTGA
ACCTATGGAGACGAATGGCAATGATGACAAAAATGCAGTCACTCAACCGC
CTTCAAAGCGAAAGAAAAGAGAATGAGAGAAAGAAAAGAATGACAACTCA
GATGGAGAAAATGACAAACCAAAAGCTCCACCTAAGAAGAACAAAGCCCA
TGAAGTCAGCTCTCATTTTCAAAGACAACGTGTCGATATGCTCTTAGCCA
ACTTTGCCCAAAATTTTCCTCCAAAAATGGTCCAGCACAATCCTACTCTC
ATTACAATCCATCCAAAGGTTACTGGTGGGTCTTCAAAGCTGTCCTCAAT
CCACAAACTGCAATCTGCTTTTGAAGAAGCTACCCATTTGGCGCTATATT
ACATCTTGGCTGGTATTGTTTACCAGGCTCCTGATGTCGGATCCATGATC
AATTCAAGACTTCTATATGACAGGTGTTGAATACAGACTAATTCATGGTC
AAGATCCAATCCTCTATGTCATTAGAAAACAAATGAGACATTCACCTAAT
CAAAATGTNTTTAAATAGATTTCTTTTGATAATGGCTGCAAGCTCAACAG
ATAATAAATTTTCTATATCATGGCATGATAGTGCTTGGATACCAATATTA
AATTCAGAAAATGTTTTGGATTATTTTTGTCAAAGAAGCAACACCTTTTA
TGATAAAACATGCAATAATGAACAAGTAAAAATGCAAAGGCTTGAACCAA
CTCAATTAGAAAAGTACGGAAGGTGATTGCAGCAAGTCTAAAGAAACAAA
AATGGACAGTGATACACCAGACATAAAAATCGAAGCAGCTGAACCTATGG
AGACGAATGGCAATGATGACAAAAATGCAGTCACTCAACCGCCTTCAAAG
CGAAAGAAAAGAGAATGAGAGAAAGAAAAGAATGACAACTCAGATGGAGA
AAATGACAAACCAAAAGCTCCACCTAAGAAGAACAAAGCCCATGAAGTCA
GCTCTCATTTTCAAAGACAACGTGTCGATATGCTCTTAGCCAACTTTGCC
CAAAATTTTCCTCCAAAAATGGTCCAGCACAATCCTACTCTCATTACAAT
CCATCCAAAGGTTACTGGTGGGTCTTCAAAGCTGTCCTCAATCCACAAAC
TGCAATCTGCTTTTGAAGAAGCTACCCATTTGGCGCTATATTACATCTTG
GCTGGTATTGTTTACCAGGCTCCTGATGTCGGATCCATGATCAATTCAAG
ACTTCTATATGACAGGTGTTGAATACAGACTAATTCATGGTCAAGATCCA
ATCCTCTATGTCATTAGAAAACAAATGAGACATTCACCTAATCAAAATGT
NTTTAAATAGATTTCTTTTGATAATGGCTGCAAGCTCAACAGATAATAAA
TTTTCTATATCATGGCATGATAGTGCTTGGATACCAATATTAAATTCAGA
AAATGTTTTGGATTATTTTTGTCAAAGAAGCAACACCTTTTATGATAAAA
CATGCAATAATGAACAAGTAAAAATGCAAAGGCTTGAACCAACTCAATTA
GAAAAGTACGGAAGGTGATTGCAGCAAGTCTAAAGAAACAAAAATGGACA
GTGATACACCAGACATAAAAATCGAAGCAGCTGAACCTATGGAGACGAAT
GGCAATGATGACAAAAATGCAGTCACTCAACCGCCTTCAAAGCGAAAGAA
AAGAGAATGAGAGAAAGAAAAGAATGACAACTCAGATGGAGAAAATGACA
AACCAAAAGCTCCACCTAAGAAGAACAAAGCCCATGAAGTCAGCTCTCAT
TTTCAAAGACAACGTGTCGATATGCTCTTAGCCAACTTTGCCCAAAATTT
TCCTCCAAAAATGGTCCAGCACAATCCTACTCTCATTACAATCCATCCAA
AGGTTACTGGTGGGTCTTCAAAGCTGTCCTCAATCCACAAACTGCAATCT
GCTTTTGAAGAAGCTACCCATTTGGCGCTATATTACATCTTGGCTGGTAT
TGTTTACCAGGCTCCTGATGTCGGATCCATGATCAATTCAAGACTTCTAT
ATGACAGGTGTTGAATACAGACTAATTCATGGTCAAGATCCAATCCTCTA
TGTCATTAGAAAACAAATGAGACATTCACCTAATCAAAATGTNTTTAAAT
AGATTTCTTTTGATAATGGCTGCAAGCTCAACAGATAATAAATTTTCTAT
ATCATGGCATGATAGTGCTTGGATACCAATATTAAATTCAGAAAATGTTT
TGGATTATTTTTGTCAAAGAAGCAACACCTTTTATGATAAAACATGCAAT
AATGAACAAGTAAAAATGCAAAGGCTTGAACCAACTCAATTAGAAAAGTA
CGGAAGGTGATTGCAGCAAGTCTAAAGAAACAAAAATGGACAGTGATACA
CCAGACATAAAAATCGAAGCAGCTGAACCTATGGAGACGAATGGCAATGA
TGACAAAAATGCAGTCACTCAACCGCCTTCAAAGCGAAAGAAAAGAGAAT
GAGAGAAAGAAAAGAATGACAACTCAGATGGAGAAAATGACAAACCAAAA
GCTCCACCTAAGAAGAACAAAGCCCATGAAGTCAGCTCTCATTTTCAAAG
ACAACGTGTCGATATGCTCTTAGCCAACTTTGCCCAAAATTTTCCTCCAA
AAATGGTCCAGCACAATCCTACTCTCATTACAATCCATCCAAAGGTTACT
GGTGGGTCTTCAAAGCTGTCCTCAATCCACAAACTGCAATCTGCTTTTGA
AGAAGCTACCCATTTGGCGCTATATTACATCTTGGCTGGTATTGTTTACC
AGGCTCCTGATGTCGGATCCATGATCAATTCAAGACTTCTATATGACAGG
TGTTGAATACAGACTAATTCATGGTCAAGATCCAATCCTCTATGTCATTA
GAAAACAAATGAGACATTCACCTAATCAAAATGTNTTTAAATAGATTTCT
TTTGATAATGGCTGCAAGCTCAACAGATAATAAATTTTCTATATCATGGC
ATGATAGTGCTTGGATACCAATATTAAATTCAGAAAATGTTTTGGATTAT
TTTTGTCAAAGAAGCAACACCTTTTATGATAAAACATGCAATAATGAACA
AGTAAAAATGCAAAGGCTTGAACCAACTCAATTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011974XLOC_011974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021389-exon-sc0000385-1575043694:481877..482861TCONS_00021389-exon-sc0000385-1575043694:481877..482861Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:480913..481004TCONS_00021389-exon-sc0000385-1575043694:480913..481004Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:480145..480227TCONS_00021389-exon-sc0000385-1575043694:480145..480227Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:479709..479748TCONS_00021389-exon-sc0000385-1575043694:479709..479748Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:479026..479079TCONS_00021389-exon-sc0000385-1575043694:479026..479079Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:478531..478664TCONS_00021389-exon-sc0000385-1575043694:478531..478664Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:477679..477703TCONS_00021389-exon-sc0000385-1575043694:477679..477703Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1575043694:476686..477431TCONS_00021389-exon-sc0000385-1575043694:476686..477431Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:481877..482861TCONS_00021389-exon-sc0000385-1510915933:481877..482861Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:480913..481004TCONS_00021389-exon-sc0000385-1510915933:480913..481004Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:480145..480227TCONS_00021389-exon-sc0000385-1510915933:480145..480227Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:479709..479748TCONS_00021389-exon-sc0000385-1510915933:479709..479748Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:479026..479079TCONS_00021389-exon-sc0000385-1510915933:479026..479079Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:478531..478664TCONS_00021389-exon-sc0000385-1510915933:478531..478664Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:477679..477703TCONS_00021389-exon-sc0000385-1510915933:477679..477703Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1510915933:476686..477431TCONS_00021389-exon-sc0000385-1510915933:476686..477431Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:481877..482861TCONS_00021389-exon-sc0000385-1491911889:481877..482861Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:480913..481004TCONS_00021389-exon-sc0000385-1491911889:480913..481004Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:480145..480227TCONS_00021389-exon-sc0000385-1491911889:480145..480227Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:479709..479748TCONS_00021389-exon-sc0000385-1491911889:479709..479748Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:479026..479079TCONS_00021389-exon-sc0000385-1491911889:479026..479079Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:478531..478664TCONS_00021389-exon-sc0000385-1491911889:478531..478664Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:477679..477703TCONS_00021389-exon-sc0000385-1491911889:477679..477703Clytia hemisphaericaexon
TCONS_00021389-exon-sc0000385-1491911889:476686..477431TCONS_00021389-exon-sc0000385-1491911889:476686..477431Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021389-proteinTCONS_00021389-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:476686..482861 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.4692	20.5094	12.6689	11.0846	20.9776	16.3248	15.1339	16.8398	12.4122	11.6695	9.78775	9.57236	8.02234	7.92917	7.51063	7.50572	12.4834	11.5351	5.82144	6.37505	10.0619	9.52395	22.6337	18.4911	8.71207	10.4078	5.26386	4.18002	11.4296	14.3813
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016820Mediator_Med6_met/pln
IPR007018Mediator_Med6
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
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BLAST of TCONS_00021389 vs. Swiss-Prot (Human)
Match: MED6 (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 2.448e-75
Identity = 124/218 (56.88%), Postives = 154/218 (70.64%), Query Frame = 3 
Query:  804 IMAASSTDNKFSISWHDSAWIPILNSENVLDYFCQRSNTFYDKTCNNEQVKMQRLEPTQLDYMTGVEYRLIHGQDPILYVIRKQMRHSPNQTTHLALYYILAGIVYQAPDVGSMINSRLLSSIHKLQSAFEEAQSYSHYNPSKGYWWVFKDGENDXXXXXXXXXXXHEVSSHFQRQRVDMLLANFAQNFPPKMVQEK--EKNDNSESTEGDCSKSKET 1451
            + A    DN   ISW DS+WIPILNS +VLDYF +RSN FYD+TCNNE VKMQRL    L+ M G+EY L+H Q+PIL++IRKQ R SP Q   LA YYI+AG++YQAPD+GS+INSR+L+++H +QSAF+EA SY  Y+PSKGYWW FKD E ++ K  PK  +  E SS FQRQRVD LL +  Q FPPK VQ K  EK    + T+ +     ET
Sbjct:    1 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHE-EQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPET 217
The following BLAST results are available for this feature:
BLAST of TCONS_00021389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED62.448e-7556.88Mediator of RNA polymerase II transcription subuni... [more]
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