TCONS_00021708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021708
Unique NameTCONS_00021708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021708 ID=TCONS_00021708|Name=TCONS_00021708|organism=Clytia hemisphaerica|type=transcript|length=1363bp
CATGTCCAAATAAGGGATGCTATGAATTAATCGAAAAATCGCAGTTACAA
CATCACGCAGAATATTCATGcaaaacaaatttaattttgtgTCGGTGGCG
ACAATATGGCtgcttggaagagCTTCCTCGTCCCGAAATGGTGGTCCATC
AGGCGGAATGTGAAGTAACTCAAATAGATTACGTCATTATTGATCATTAT
AAAGAAATTATCTCCATGAAGCAAGAGGCAAATAAACTGAACCAAAAGAA
GTTAAATGAAATTACGCCAAAacataaagaattaaaattgaaaGCTGAAC
AATTAAGAGCAGAATGGGAGAAATTTCACCAAAGTGAAAGCATGGTGACT
ACGAGTGATGGACGTTTGAGACTTGTCAATTTCCAAGATCTTCTAATGTT
AATCCAAGAAAATGATATAATCAATTTCATGCAATATACAAGTCAATCAT
ACCGTCTGGTTGAGCTACTCGATGAAAACGGGGACACCCTTTTACACCAT
GCCACCCGTTACAAACGCCCTGATTTCGTCTTATGGCTTATACAGTTTTC
CGGACAATACACACAGTGCAAGCCAAATGTTAAAGACCATGATGGTCAAA
ATTCAGCCCAAATTGCAGTTACTGTAGACTGTATACCAGTTTTACAAGTT
CTCTTAGATAATCAACCAGAGCTTCTTAATGAGGATAGAACGAGCCATGG
TTCAACATTACTGCATATGGCTATCGATCTTGGTTTTGAGGAAATGGCCA
AATATATATGTTCAAGAGTTGATGTTGATGTGAATGTGAAAGATATCTTC
TCAAAGAAGCCAGATGATTTAAAAGAAGTCAGTAAGGATGTTAAACGAAT
GATTAAAAATCACCGATAAAATGATCACTGAAAAAAGTGATCGTGGGTAT
AGCAAGCTATCCAATCGTGGATTGTGAAATCTGTCTACAGTGAAAACGAT
AAAGACTGAGAACGCCAACAGGCTTCAAAACCTTTTGACGTTCTCATAAC
AACGTGTTTCCACAAGGCATGTACAtagattttaaattattttatgaATA
TGAATGATTTTCTATAGTTAAgtatgtaaaaatatttttgtaatcaatAT
TCAAATATTGGGTAGAGAATTATACCCTATAGCTAGCTAATCTCTAAGGT
AGGTACTTTAAGGTTTTAAAAGGAGGGTGGTCAATCTTGTTAACGAagca
gtttttatttttgtgactGTGTCTTTATCCCCGGGGGAGGCACtttggca
aaattgggtacggggacgtgccgctattcagggtcccttttttaggttCT
GAAGATATCTAACAGGGTCCCAAATCTACTAATTTACAAGATGTGAAGCT
GACAGGATCGACT
Run BLAST on NCBI

transcript from alignment at sc0000393:177012..183309+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021708 ID=TCONS_00021708|Name=TCONS_00021708|organism=Clytia hemisphaerica|type=transcript|length=6298bp|location=Sequence derived from alignment at sc0000393:177012..183309+ (Clytia hemisphaerica)
CATGTCCAAATAAGGGATGCTATGAATTAATCGAAAAATCGCAGGTAAGA
AGAttcagaccatgttcacacgttacccTTCCTTTTcactccggtatgat
tttcgttacggatcgagtttgttcatattggtttcggaacgtttcggagc
aagaaaacggagcagttccgttccgatgaaaaaagtggagtgAAACCTTT
TCAATctattttgctttgtaacgtcttcttttttgacgtttcgaattttg
acgttcacacttgtttcggaaccgtcgTCTGAACATCGTCTCAATATACT
CTAAATTTTCTCATGCTGGACAATCACTGTTCAACTACCTTAAATACCGC
CATTGTTTCTCTAATTACGCCTTATCCGCCCTCggttttgtcaatttttt
attgCTCTTCTGTGGCATTATTCTAAACTGCATTCGCTTTAAGTGTTGAA
TAACCCTTGTTGTGCATgccatttttcaaacaaatgcTTCAGTATCTAAC
TAATCTCCACGTTCCgtcatacagggtgtccctaattaaagtatcgagtt
tgaacatgcgattgagtagaaaagtttgtatGTGTTATCGctctaaaata
taagaacgttctccatcacacaggcttattacaaaaggtagttacaacgt
ataaattaatcgtaatgacaaagaaaaaagagggagagcttaaaatacaa
ttttgtgaacacgcacataaaactttctactcgtagttgtgtttcgactc
gatactttaattagggacaccctgtataagcaaattctttttaaaaaact
ttaaagaagTCCCTCCAGACATATCAGATGTCTCTCTTGACAATAATTCA
TAGTTTTACGATTGTATCACTTTTTTACGACTCTTAAATcagcattttac
caattttgtaACGTATGTTTTCACACagcttttataattttttagttACA
TCTGATGATTGCTTACTGAGCATGAAACTCGGAAACTCTGAAAAAAGtac
acacttaaagcgaatgcACTTTTGATTCCTTCCTCTCTACCTCTCGtcat
aagttttacctcagttTTACCTGCGCtaattattttttgtattttcttta
gTTACAACATCACGCAGAATATTCATGcaaaacaaatttaattttgtgTC
GGTGGCGACAATATGGCtgcttggaagaggtatttgtCAAACGATACATT
TTATCAAGGAAAACCttgagggaactaattttggcgtaACTAATTTTCGC
ATTTTTGGGTGTCGACACCCACTTTTTGCcgaaattctttcatattccta
gggtttttttagtaaaaaactGCATTTTGcggaaaaaactttcgcgtttt
tgggtgtctaccgTTCATGGGCTATATGACGTCAAAATGCAATCGGTCAT
TCCAACGGCATCTGAGAATTGACTtcagcgagattatgtatctagaattc
tctacggctacagTTAAAgcggcgagggaaatggcgagtaaggcaagcaa
tggcgggtgaaagcaagttcgatatttgacgtacgacattatgtcaactt
tgcttatacggtattttggtgtttttcccgtacagagcaaagtagacaac
gacatgttgCCTTTGGCGACGACCCGCATGGGCAGCCCCGCAActgtagc
cgtagaatatctccgatacataatctcgctattatAAATTCCAGGTATAC
TCGAATCTTATGCGTTCATTGTTTTCTAGCTTCCTCGTCCCGAAATGGTG
GTCCATCAGGCGGAATGTGAAGTAACTCAAATAGATTACGTCATTATTGA
TCATTATAAAGAAATTATCTCCATGAAGCAAGAGGCAAATAAACTGAACC
AAAAGAAGTTAAATGAAATTACGCCAAAacataaagaattaaaattgaaa
GCTGAACAATTAAGAGCAGAATGGGAGAAATTTCACCAAAGGTTTGATAT
GAAATACTATTTTACCCTACCAGAAAAATGATTACTCAGCATTTATGATA
GTGCAGTGGAGAAAAATTTAGATATTCGGCCGAAATTTTGGCAGCAATCC
GTTCTTTGTCATTTACCCAAAGTTATACACTTACCCTCGACTTTGTTTTG
CCCTGTAGAGGACTCAAACGCTTGGATCtatatgttttcaaaaaaatcta
tatGAACTTCCAAAAGACGCATATTTGTGTATATaccacaggaaaaaatc
ttcaaatcccaATGTTTGGGAAATACGTATTTCCAGATCCGGAAAATGAT
GTATTTCCCAAACCAGCCCCAAACTTGGGATTATGCAGCTTGTACGTAGG
TTGTGAATTCCAATATCACAAAGCTTAAAACCAGATCTGGAATAGGGTTG
GGAAACTAGGTTTCCCAAACTTGTTAAAGTTTAGTTCACATTACGGAAAA
TGGCTATTAACAATGCTGAACACAAAGATTGAGTTTGTGATTCTGTATAA
CACAATTGGGAAACTCAAATACCCAAATATGATTTGTAAATAAATGTATT
CGATTATTCGTGAGCATTGGCTCGATAGCTCCCATTCGTTCTGTCATGTA
CTTgtgctactttgagaatcccggcactttgTCACAACAGCGGAACAACG
ACGTGGTACCGATTGAACGGCCGCACGGCGACTGACGATTCCACTGAGCC
CTTGTGACGCAAGTCAATTGCGAACGGACGAGGCCGCCCTTGCGGAACGC
ATCACCTTTagcgttgtgttacacactgatcgaatACACAAGTTATGATC
TGAACAGTTTTGACCCAATTTCtacttttggtttttcttaCGCATGCGTG
GTACTAGTTTGGGAAATTGATTTTCACAAATGTGAAATCGATATTTCCCA
ATTTAAACTTTCTAGGTGAAATAATGTCAGATTCTTTGTACTTgaggttt
tagaaaaaaagttttaaatgttttaaaaggGTTTAATTAAAGTTAACCCC
GAAATCACAAGTTTGGGAAATTGCGAATCCCAAACTTATCTAATTTTGAG
TTTTCCAGTACcaagtttttgattttataacaAAGTCTAGATATATATAT
CACAAGCTTGGGAACGGCATTATCCCAAACCTAGTTGGTTGTTTTAGCTT
TAAGTTTGTTATATAAGTTTTCCACAttgtgattttgattttcccaaGGC
ATGTCTAATTTAACTTAAACTCAAATGCCAATCGTGAAATGCAATATCCC
GAACGTCGTAGAATCCCAAACTAAAAATTACAAAGTGAACATGATGTGAA
AATTTCCAGATACGTAAACTGAAATTCCCAAATTTGGGAATcgatgattt
tttcctgtgtactGGGTTAAGATACTGAGTACCAAACTATATACCACAAA
CTATAGGggggttcatggttggcggaggagcagaatcaattttagtgcgg
aatcaatttttccgaaaaaatggACTTTTGCAAAAAGTTTCGCGGAATTA
CGGAATTTGCagaaaatactcaaaatttccggaaattttgacgaaaacca
tgaatttcaaaggaattttctgCGGTGGAATttcggaatcgggtaccccc
taaACACCCTCCCCCTCATCACCTTATAACAAAAATCagcttttaaaaag
aatttgcgCCCCGAAAAGGTTAAGCTGTCCTTAAATACATATCTATAGCT
ATATAATATCTACTATTCCATTCGATACTTTGTATTTTTCCTCCAAACGT
GTACTGTTAGATCAATTTTCATATCTTTCATTTGTATGGATTTGAATTTT
AGTGAAAGCATGGTGACTACGAGTGATGGACGTTTGAGACTTGTCAATTT
CCAAGGTAAGTAAGTATCCACATAGAACGTCCAAACAACATCCATATGAC
ATCCATAACCTACGTATGGAAATAAAGTTGGATTTTATTCAACCAATGGT
GCGTGCTATCCTAAAATATGTCCTCGAACCTTAAAGGGAAATCTGAATCT
GGGAAATTATTAGGTCATTTTTAGGTAAGTAATTAACTGCAAGTCATTGG
GCTAGTTTTCGTTAATgaaaagttttaagttttaTCCAACTAAGTATTTT
CCTTTGAGGGGTAGGCTCATAAATCTGAAATAGAATTTCGACTATAAACA
GTGGATAAAACACCTTGCCTGGTGACGATGAAAGAAGAGTTCCTCGAAAT
TAGCGCAATATCCTGCTCCAGGCTACAAAACATTTCACTATGAATTTCTC
TGTTTATCAAACTTCCAAATTCTAGATCTTCTAATGTTAATCCAAGAAAA
TGATATAATCAATTTCATGCAATATACAAGTCAATCATACCGTCTGGTTG
AGCTACTCGATGAAAACGGGGACACCCTTNtgattttttcctgtgtactG
GGTTAAGATACTGAGTACCAAACTATATACCACAAACTATAGGggggttc
atggttggcggaggagcagaatcaattttagtgcggaatcaatttttccg
aaaaaatggACTTTTGCAAAAAGTTTCGCGGAATTACGGAATTTGCagaa
aatactcaaaatttccggaaattttgacgaaaaccatgaatttcaaagga
attttctgCGGTGGAATttcggaatcgggtaccccctaaACACCCTCCCC
CTCATCACCTTATAACAAAAATCagcttttaaaaagaatttgcgCCCCGA
AAAGGTTAAGCTGTCCTTAAATACATATCTATAGCTATATAATATCTACT
ATTCCATTCGATACTTTGTATTTTTCCTCCAAACGTGTACTGTTAGATCA
ATTTTCATATCTTTCATTTGTATGGATTTGAATTTTAGTGAAAGCATGGT
GACTACGAGTGATGGACGTTTGAGACTTGTCAATTTCCAAGGTAAGTAAG
TATCCACATAGAACGTCCAAACAACATCCATATGACATCCATAACCTACG
TATGGAAATAAAGTTGGATTTTATTCAACCAATGGTGCGTGCTATCCTAA
AATATGTCCTCGAACCTTAAAGGGAAATCTGAATCTGGGAAATTATTAGG
TCATTTTTAGGTAAGTAATTAACTGCAAGTCATTGGGCTAGTTTTCGTTA
ATgaaaagttttaagttttaTCTGACTAAGTATTCCCTTTAAGGTAGGCT
TATCGATCTGAAATAGAATCTCGACTATAAACAGTGAATAAAACACATTC
CAAAAAAATTCCAATATGAATTTCTCTGTTTCTCAAACTTCCAAATTCTA
GATCTTCTAATGTTAATCCAAGAAAATGATATAATCAATTTCATGCAATA
TACAAGTCAATCATACCGTCTGGTTGAGCTACTCGATGAAAACGGGGACA
CCCTTTTACACCATGCCACCCGTTACAAACGCCCTGATTTCGTCTTATGG
CTTATACAGTTTTCCGGACAATACACACAGTGCAAGCCAAATGTTAAAGA
CCATGATGGTCAAAATTCAGCCCAAATTGCAGTTACTGTAGACTGTATAC
CAGTTTTACAAGTTCTCTTAGATAATCAACCAGAGCTTCTTAATGAGGAT
AGAACGAGCCATGGTTCAACATTACTGCATATGGCTATCGATCTTGGTTT
TGAGGAAATGGCCAAATATATATGTTCAAGAGTTGATGTTGATGTGAATG
TGAAAGATATCTTCTCAAAGAAGCCAGATGATTTAAAAGAAGTCAGTAAG
GATGTTAAACGAATGATTAAAAATCACCGATAAAATGATCACTGAAAAAA
GTGATCGTGGGTATAGCAAGCTATCCAATCGTGGATTGTGAAATCTGTCT
ACAGTGAAAACGATAAAGACTGAGAACGCCAACAGGCTTCAAAACCTTTT
GNTATCACTGAAAAAAGTGATGGTGGGTAGAACAAGCTATTTTATCCAAT
CGTGGATTGTGAAATCTGTCTACAGTGATTACGATAAAGACTGAGAACGT
CAACAGGCTTCAAAACCTTTTGACGTTCTCATAACAACGTGTTTCCACAA
GGCATGTACAtagattttaaattattttatgaATATGAATGATTTTCTAT
AGTTAAgtatgtaaaaatatttttgtaatcaatATTCAAATATTGGGTAG
AGAATTATACCCTATAGCTAGCTAATCTCTAAGGTAGGTACTTTAAGGTT
TTAAAAGGAGGGTGGTCAATCTTGTTAACGAagcagtttttatttttgtg
actGTGTCTTTATCCCCGGGGGAGGCACtttggcaaaattgggtacgggg
acgtgccgctattcagggtcccttttttaggttCTGAAGATATCTAACAG
GGTCCCAAATCTACTAATTTACAAGATGTGAAGCTGACAGGATCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012178XLOC_012178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021708-exon-sc0000393-1491911889:177012..177055TCONS_00021708-exon-sc0000393-1491911889:177012..177055Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1510915933:177012..177055TCONS_00021708-exon-sc0000393-1510915933:177012..177055Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1575043694:177012..177055TCONS_00021708-exon-sc0000393-1575043694:177012..177055Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1491911889:178113..178190TCONS_00021708-exon-sc0000393-1491911889:178113..178190Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1510915933:178113..178190TCONS_00021708-exon-sc0000393-1510915933:178113..178190Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1575043694:178113..178190TCONS_00021708-exon-sc0000393-1575043694:178113..178190Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1491911889:178741..178952TCONS_00021708-exon-sc0000393-1491911889:178741..178952Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1510915933:178741..178952TCONS_00021708-exon-sc0000393-1510915933:178741..178952Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1575043694:178741..178952TCONS_00021708-exon-sc0000393-1575043694:178741..178952Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1491911889:180764..180816TCONS_00021708-exon-sc0000393-1491911889:180764..180816Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1510915933:180764..180816TCONS_00021708-exon-sc0000393-1510915933:180764..180816Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1575043694:180764..180816TCONS_00021708-exon-sc0000393-1575043694:180764..180816Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1491911889:182213..182796TCONS_00021708-exon-sc0000393-1491911889:182213..182796Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1510915933:182213..182796TCONS_00021708-exon-sc0000393-1510915933:182213..182796Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1575043694:182213..182796TCONS_00021708-exon-sc0000393-1575043694:182213..182796Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1491911889:182918..183309TCONS_00021708-exon-sc0000393-1491911889:182918..183309Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1510915933:182918..183309TCONS_00021708-exon-sc0000393-1510915933:182918..183309Clytia hemisphaericaexon
TCONS_00021708-exon-sc0000393-1575043694:182918..183309TCONS_00021708-exon-sc0000393-1575043694:182918..183309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:177012..183309 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7098	8.60953	14.4835	15.76	1.18828	1.14042	8.5529	6.35064	3.78576	4.38765	3.27352	2.49051	3.16359	2.52995	1.3813	1.70959	9.53867	19.6902	7.06975	5.98812	7.23377	7.22383	10.1379	10.0943	3.80993	3.34486	3.16335	2.5687	4.65988	5.79188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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