|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021746 ID=TCONS_00021746|Name=TCONS_00021746|organism=Clytia hemisphaerica|type=transcript|length=617bp
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTggCTAACAAAAA
GATAGAAATGGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatg
tatttcaaaaaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAA
CAGTTGGATGTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGA
TCTTGTCGAACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTG
TTAAACAGGATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGAT
TATATACAAAGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCA
AGGTAAACAGGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAAT
ATCAACAACTGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCag
tttttgaaatctaggtACCTAATTTATAtccttttgtttttgaatacaTT
AAGGTCAAAACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACC
TTTATTGATGATAatttgctttttctttcttgaCATGACATTTGATCAGT
GCTTTGGATATTAAAAT Run BLAST on NCBI protein sequence of TCONS_00021746-protein >TCONS_00021746-protein ID=TCONS_00021746-protein|Name=TCONS_00021746-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
NSCIIEENKLQNVANKKIEMAAKIQEQLQKEIDVFQKMQKDLQKLVTGRQ
QLDVQYNENKVVKDELDLVEPDSNVYKLTGPILVKQDLSEAKLNVGKRLD
YIQSELKRHEKSITDLQGKQEKKKESLTKLQQQYQQLLPKQAAK Run BLAST on NCBI transcript from alignment at sc0000394:156754..163638+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021746 ID=TCONS_00021746|Name=TCONS_00021746|organism=Clytia hemisphaerica|type=transcript|length=6885bp|location=Sequence derived from alignment at sc0000394:156754..163638+ (Clytia hemisphaerica)
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTGTAGGGATTTGT
TTAAACATCTTTTACTTAATATGAATTCTTTTACATCAGTGCACAAGTAA
GATCCAGTGTCCAGTGAAATGTAAAGAATTTGCTGTTGCCAATAGTTGCA
CTGTGTGAgccttttttacattttacaaactaCAAAAAAGATATATATCA
TGGCCAAGCTATATCCTctaaatgggctattccatttttaaaccacaGGG
GTATTGTCGAATAATCCCAGGGGGTTGGTTGATTTTTCATAAGGGAATTT
TTCTTCATATAaattcagattttccaaggggagGGGGGGTGagaggcgct
gtggtatagttaGCCATTCCAGGCTGAAATTGAAACTATTCcggtggcaa
tcaaacctagttcatcttgtagagcttcaaaaaagaaaaaaaatgagggg
tcatacacctcctaatgataagcggttccggagatattgagattATGGTT
ACGGTTaaatagcacctttttagacatttgaggttgacaatttagcccag
aaatggcaCATAAAATGGCACCGCAATATgctgcgaaaattgaaaattca
agtttttgtattgagtcaagatattccagatatctttattttgactgcag
acttttatcaaattctttttgtaatggcttgctaacacttcaaggNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaactgttttaggctaaaaaagggtcaaattttt
cagtggtatcactctctataattctagtcctcattttcaggctgaaaatg
cttgccaaagtatgaaaagcaaaaaataatacctttaatgaaagaattaa
tttcagagagtagcaccattggatttctcaggtattttctgataaatatg
gaaagtttcactgtctgGACATTAtttcctccgcagcgctttgaaatcaa
agatgagttgtgaaattttttgtgtcccgcagatctaatttttctaaaaa
tggccttagTTGAAACGAATTTTTAGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNcctgcatattatatatggttgg
aaagctaaaagaaagctctaaattactcaaaaataattaattttatagct
caactacacaaagaacaattgcttgtcaaagttttacctaaaattgaaga
ttttgataagcgtcaaataaaaaacaagcaaacccggaatggctagtata
gtggtcattgaccttggttgctgcacaggcgactgaggttcgatagacct
tttttcaaagaggatgtcctgttgaataattatgtagtccagccataaaa
acaatgatagagccatgaataattactgtatcatgcatattgtaataatt
aggcatggttttatcattgtttttcagctggactacataattattcaaca
gggtggcctctttgaaaaaaggtctattcccactcgcagcggttcacttg
gccaagtgaatgaacctttgcCCGGgttaacccatgccatgtgaggagaA
TCGGGTAGTCAGCCAGTCTGGAAAGGAGGGAAATGTTATGCCGGAGCTGC
GCCAACTTAACTGGGAAAAGTTGAAGGCAAGCAGATCTCAAACCTCAAAT
CTACGCCGGAGATATCCGGCGCACAAGCCGCAATTTCAAGACTGGgtagc
ctcctgcaactcaaccaaatagagaaatagaaatagattGCCAGTTTGCA
CTTCATTAAGATTTGCTGGAGATCTCGAGTGCAGCACTCTTGGAAAATCA
ATCGGATTATCTTACTCAATATCTCATTTGCCTTCTCAATATGAAAGAAA
CTGCtcagctctaaagctctaacatagcatctaataacatgaaaatcaGA
ATATGGtttttcaatgggaatcaaaactgtaaagtgcacttacaaacata
cATTtttcagatctaacaaaattaataacggcactgtcagtatagactta
aactcatatatcaagattacgggatttcgagtacgggccgattttacttt
cgttttgagtggtttcattttcgatttcaacccaacatcttagcaacggg
gtgctcgcccatagttacaggcagtcagggaaatcccttaattgcggtat
aaacgtcacttttacacttttcatataccgcaattgcagtatattcaaga
aacagaattNGTAattttttactgcaattgcggtataaacgtcactttta
catttttcatataccgcaattgcagtatattcaagaaacagaattcttca
agattcaaggagaaaataggcaaattttgtacataattgatcatatcttt
ttaatacacgtagacaaaatattttttccgtagatcagattcttttgata
aagaaaagctTTATTCTCGTATGATTttttacagtcgatgtttgtttatc
tttatcgaccagcactatatgtagctgttataagcctttgtaggctaacC
ACAAATGAAAgctactgcaattgcagtataccgcaattgagggatttccc
tgactgacaggtgtttgtgcaaaaaactaaacatagaaaattttccaaat
ctccCATTTCgataaatgaaatgaaaaatgaaacttttctatgtttcact
tttttgcacctattcttcaaaatgaaaatatttaagattttaagttcttg
ttttattcaatgattttttatggcactttgttgacaatctaactctcgca
tcaaatttccgctttcttcagtaaattgaagatgagaaaaaacctaagcc
acggatTACGGATTGAAACGaatatatgaagggtgagattttacagccgc
ccctTATgtaaggcactgaaaggccacagGTGCCCAAAAGAAGAGCCGTT
TGAAATGCAGCAACCTCATTGACGTGGAAATTTAGTAAACAGCTACGAAG
GAGGTCTGGGAAGCagtcagtagaagagaccactttcgtttttgttgcag
atttctataaaaacttttctcagggattacttgtcaatgtacatgtacac
atgtgttgtgtcaacttgtcagcatttgTATTGCTGTAAAGGAATAgaga
aaagaggtaagactagcctagtttttaatcctgatataggagtttaagtt
tagactgactgtcatcattgacaatcaaacaaacgatagtctgtcaagag
ccttgtaaacattccaacaactttcaTCGAAATGATCTGCCACAGCtatg
tctaccattttagcgcccggtccgaggattgagccttGAATTGAATCTTC
AGGTcagtaagtttttatttctggtCAGTTTTAACCGATAATCGACCGCT
ATTTCGATCACTGAAAGTGATATAAAAATTCTAACAAAATGGTTAAGGGG
GCTAGGGGGttcattttcatcatcaatGCAATGATCGAAATAGCTGTCAG
TTATCATTTAAGCTTCTTTCAACCACTGCAATGATTTTAGGTGCACACTt
gtaaaatttaaagtaaatagatatttcaaaagttaaaatatatttttgtg
tgTAGTAAAAAGCCAGACCTTAGGATCTGTCACTTCTTTTGTTGAACGTC
ACCCCCTGCGTTTAGTTAATGAAAGTAGATATGATTTTGAGACATTTTTG
AGAAGAGGCTTGTGAATTAGGCCTGACAAAACTTTTTATGGTCAAGCATA
TGGGTGATAAATTGAAGAGTATGTtcactgtatttctcaaggaaaatgac
gtatgttcactgtatttcccaaggaaaataaAGTACTTAcaaatacagag
ttttcccttacaaatacagagttttcccTTACAAATACAGACTTTTCCCT
TAcaaatacagagttttcccttacaaatacagagttttcccttacaaata
cagagttttcccTTACAAATACAGACTTTTCCCTTATGTtcactgtattt
ctcaaggaaaatgacgtatgttcactgtattttccaaggaaaatgtgAAG
CATGTTCActctatttttcaaagaaaatgaagaatgcACACTCTGTATCT
TTCAAGTAAAATTAAGTATGTTTACTAAACGtagtcgtctaagaaaacag
ctttttttttttagaatcttccttacaatctagtttttctatttataaaa
agtagattgctgacgtgtggaaaggaatttcggcatgactgatccttttg
tttcgataataacatcaaagcgggaattaattttcttctcgattctttct
ttcctttttctttcttatcagttcaGGCTTTCCCTCGCCACTctcaaagc
gtggttagctcaagcggttagatcgTCTGTCTCATATGCATGGGGCTCTG
AGTACGATTCCGATGGgtgtccaatttttcaattcttcaattttcttttt
tNCGAGTTCGATTCCGATGGgtgtccaatttttcaattcttcgattttct
ttttttaattctctttcttttataatgaaggtcaattaaacaagtaacta
gcatatattacctccgctctagtgctgcaaataaggaaatttcagttggc
cggtaattttttgAGTGTAACGAGCAGGGGGTCCGGTGGAACCATCTTAG
AAAACTTTGTAGTATGTGATGACTTAGCTTGGTTAAACACctattttagt
ttgaaaactgttcctcttttaattagaagcgctatatattaagtatttat
ctaagcctctaatcttcaaattttaaccggacaaaatgaaaaactgagcc
acagaatgaccggtagaaactacaaaatgaccggtaattaccggtcacct
gccgttatttgcagcactgcgcTCTCTGTctaaggtttagataagctatA
ATAGCATCACTTattaataagaacttttttaagtttttttttcttcaatc
atttttttgccacaagcgattattcacGGCTAagatatagaagaacgggt
ATAGGCGTTTGCGTCTGCGTTTGCTGACTGACAGTTTCACTTTCACTACT
TTCACTAGATTCATTTTCAGCCAGTGAGTGAGCGAGCGATTCTTTGTGAG
AGAATCGTCAAATAACTTCTTTCAGAATCATTGAACTTCTCGTTTTATAC
TTAAAGGCAGAATAATAATCgatttccgggtcaaaatgtttggcacctga
tccaatcgtttgcttatctttcttgcgtggtcgttatttgaatttcagta
ttcaatgcttataaaatatgGTTTTTATAAGAGTATTAAACTCCTCACTA
Tgagggaacagatcatagattcgatttgaacgcgtaattactaatagcaa
ttaacattacataacgcgtcgatatctcttcactctAATGATAATGTGAT
ATatacaaaattaaagtgatgagagaatcacaaaaaaaatcaagaattga
aaaattggacatCCATTGGAATCAAACTCGGAGCCCCATGCATATGAGAC
AGAcgatctaaccgcttgagctaaccacgctttgagAGTGGTGAGGGAAA
GCgtgaactgataagaaagaaaaaggaaagaaagaattgagaagaaaatt
aattcccgctttgatgttattatcgaaacaaaaggatcagtcatgtcgaa
attcctttccacacgtcagcagtaaggaagattctaaaaaaaagctgttt
tcttagacgactaCGTTTGATGATCTTTCAAAGTCGAATTCAAAGAAAAT
CTAACagttttgaacttttaaagatGATTATACTTCTTTGTGCGATTGTA
CTTGCTGTAATATACTTTTTTACTCAGAACTCTTAGAATGTCTGACATCT
TCTATGCAACAGCATGAGTCTGCTTTGTAGATTAATTCATTACCATGATT
ATTAATTCTAATGTTCCAAAATCTTTtcttaacttgaaaaattttcaata
ggTAAGCAAGTTTCTGCATATATAGCTCACTAATgtttaggaaatatttt
tttaagggCTAACAAAAAGATAGAAATGGCAGCAAAGATCCAGGAACAAT
TACAGAAAGAAATTGatgtatttcaaaaaatgcagaaaGACTTGCAAAAA
TTAGTGACTGGAAGACAACAGTTGGATGTGCAATACAATGAAAATAAAGT
TGTGAAAGATGAATTAGATCTTGTCGAACCTGATTCGAACGTTTACAAAT
TGACTGGACCTATTCTTGTTAAACAGGATTTATCAGAAGCGAAATTAAAC
GTTGGCAAACGTCTAGATTATATACAAAGTGAACTGAAGCGTCATGAGAA
ATCAATCACAGACCTTCAAGGTAAACAGGAGAAGAAGAAAGAATCTTTAA
CCAAACTGCAACAGCAATATCAACAACTGTTACCAAAACAGGCTGCAAAA
TAGTTATATATCTTTCagtttttgaaatctaggtACCTAATTTATAtcct
tttgtttttgaatacaTTAAGGTCAAAACTGGCCAAGAAAAATTATTCAT
TGTTGTTGCTTTGAAACCTTTATTGATGATAatttgctttttctttcttg
aCATGACATTTGATCAGTGCTTTGGATATTAAAAT Coding sequence (CDS) from alignment at sc0000394:156754..163638+ >TCONS_00021746 ID=TCONS_00021746|Name=TCONS_00021746|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at sc0000394:156754..163638+ (Clytia hemisphaerica)
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTggCTAACAAAAA
GATAGAAATGGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatg
tatttcaaaaaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAA
CAGTTGGATGTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGA
TCTTGTCGAACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTG
TTAAACAGGATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGAT
TATATACAAAGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCA
AGGTAAACAGGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAAT
ATCAACAACTGTTACCAAAACAGGCTGCAAAATAGAATTCATGCATCATC
GAGGAAAACAAGCTACAGAATGTggCTAACAAAAAGATAGAAATGGCAGC
AAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttcaaaaaatgc
agaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTGGATGTGCAA
TACAATGAAAATAAAGTTGTGAAAGATGAATTAGATCTTGTCGAACCTGA
TTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAACAGGATTTAT
CAGAAGCGAAATTAAACGTTGGCAAACGTCTAGATTATATACAAAGTGAA
CTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAAACAGGAGAA
GAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAACAACTGTTAC
CAAAACAGGCTGCAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021746-exon-sc0000394-1491911889:156754..156791 | TCONS_00021746-exon-sc0000394-1491911889:156754..156791 | Clytia hemisphaerica | exon |
| TCONS_00021746-exon-sc0000394-1510915933:156754..156791 | TCONS_00021746-exon-sc0000394-1510915933:156754..156791 | Clytia hemisphaerica | exon |
| TCONS_00021746-exon-sc0000394-1575043694:156754..156791 | TCONS_00021746-exon-sc0000394-1575043694:156754..156791 | Clytia hemisphaerica | exon |
| TCONS_00021746-exon-sc0000394-1491911889:163060..163638 | TCONS_00021746-exon-sc0000394-1491911889:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021746-exon-sc0000394-1510915933:163060..163638 | TCONS_00021746-exon-sc0000394-1510915933:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021746-exon-sc0000394-1575043694:163060..163638 | TCONS_00021746-exon-sc0000394-1575043694:163060..163638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:156754..163638 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002777 | PFD_beta-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0051082 | unfolded protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006457 | protein folding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016272 | prefoldin complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006457 |
protein folding |
| cellular_component |
GO:0016272 |
prefoldin complex |
| molecular_function |
GO:0051082 |
unfolded protein binding |
Blast
BLAST of TCONS_00021746 vs. Swiss-Prot (Human)
Match: PFD6 (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 8.784e-31 Identity = 54/109 (49.54%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 58 MAAKIQEQLQKEIDVFQKMQKDLQKLVTGRQQLDVQYNENKVVKDELDLVEPDSNVYKLTGPILVKQDLSEAKLNVGKRLDYIQSELKRHEKSITDLQGKQEKKKESLT 384
MA IQ++LQ E++ +Q++QKDL K ++GRQ+L+ Q EN +VK+EL L++ + V+KL GP+LVKQ+L EA+ VGKRLDYI +E+KR+E + DL+ + E+++E+L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLA 109
The following BLAST results are available for this feature:
|
