Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021927 ID=TCONS_00021927|Name=TCONS_00021927|organism=Clytia hemisphaerica|type=transcript|length=2656bpRun BLAST on NCBI protein sequence of TCONS_00021927-protein >TCONS_00021927-protein ID=TCONS_00021927-protein|Name=TCONS_00021927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp MAEEKQKERKQSIELLYYQQARKSMSEQERLQFVLKENGNCEGFLEFQVQRun BLAST on NCBI transcript from alignment at sc0000400:80265..88112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021927 ID=TCONS_00021927|Name=TCONS_00021927|organism=Clytia hemisphaerica|type=transcript|length=7848bp|location=Sequence derived from alignment at sc0000400:80265..88112- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000400:80265..88112- >TCONS_00021927 ID=TCONS_00021927|Name=TCONS_00021927|organism=Clytia hemisphaerica|type=CDS|length=8343bp|location=Sequence derived from alignment at sc0000400:80265..88112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021927 vs. Swiss-Prot (Human)
Match: PKHA1 (Pleckstrin homology domain-containing family A member 1 OS=Homo sapiens GN=PLEKHA1 PE=1 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 2.212e-31 Identity = 86/285 (30.18%), Postives = 147/285 (51.58%), Query Frame = 2 Query: 155 LQFVLKENGNCEGFLEFQV---QSIFKKYFFVLDLLERSFSYYNVNPKRSNASQCTLDSISVSDITKVTAKPNLK---EFAFEVSTHSNKYFLAAKDERDMKIWIQALKKAATSPYHAQKNTESNPLKSSSCEQLNKVNEAHSTSIIGGCVITTPVSQQ--------IDK---KRNNSNTV-----ARSALRIIREGYCWKQGAVMKNWKRRYFRLNAVSLAYYETHNEQNYIKSISTNDIRKVKIMER--FCNRINVIEVDTPGRKFYMHPENIEEVQVWRTAL 937 + +V ++N C GFL+ + F + +F+LD E SF +Y NP+ + + +I ++ I+KV+ L+ EF F ++ KYFL A D++D+ W+ L KA Q +++ N S + K ++ T I+GG I TP ++ ID+ KR+ S+ +I+ GYC KQGAVMKNWKRRYF+L+ ++ Y+++ E+ ++ I ++ KV+ ++ R N+ E+ T R FY+ ++ EE+ W A+ Sbjct: 1 MPYVDRQNRIC-GFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRHGECGKKQVSYRTDIVGGVPIITPTQKEEVNECGESIDRNNLKRSQSHLPYFTPKPPQDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAV 284 The following BLAST results are available for this feature:
BLAST of TCONS_00021927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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