TCONS_00021966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021966
Unique NameTCONS_00021966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021966 ID=TCONS_00021966|Name=TCONS_00021966|organism=Clytia hemisphaerica|type=transcript|length=1449bp
CACCGCCCACCGCCCACCGCCCAAATGTCATCGTTCAATACAACGTACAG
TAATCTCCTTTATACAACAATATCGCCCATTATCGGCACCCTCGTTGTTA
TCTTGAATTCAATCGAGTATTTTTGTATCCGTCGTATTGAAAAGTTGGAG
AGGAGCCAATCGACGAATATTTTGTATATCAAGAGTTTGTGTATCTCCGA
TATCCTGGCTGGTGTGTTTATGATCATTCTGAAAAGCATGAATCCATTTA
TGGACAACCAGTTAAAAGGTAACAAAGCTGCAGAAGAAATATATCTCATC
CTTCGTTTGGTGTTCATTAGGTTTTCATTGTTCAGTTCAATCTTCAATTT
GACTGCAATGACGCTTGATCGGTATACAAGTATCTTTTGGGCAATCCAAC
GacgaaatcaaagaaaatcattCGTTTACAAGATCATTTTAGGGACATGG
GTATTCAGTTTGATGGCTGTCTTGATCATCTACTGTATTCACCGTTGGGG
AATCGAACCAGGAAACTCATTGATGAGTCTTGTATTCCCAATTTCGTCAT
ACCCAGTAACTCTCATCTATCTGTTTTGTTACACTAAAATCTACCTTTGG
ATACGCAATCGGTCAAGAACTAACGTTTCGGTAGTCAGTAAAGAACAACC
GATTGAAGGACAGAAAGAGGCGAGAGACCAAGGAAACCGAAATAACAAAC
AAGAAATGCGATTTCTGAGACTTGCCGTTTTGACTGTTATTATTTTCGTG
GTATGTTGGATTCCTGTATCGACGTGCAACATCGTATCCGTGTCAGGTGG
GACCTGTGGGACACGTGACGTCACATCCACATTGTTTACGTTGGCTTTTT
TCAATTCAGTACTGAATCCTATTATTTATCTCCTCCATGTTCGAGGCAAA
TTGAAAAAGTGTTTCAATCGACGTAACACTGTCTCAGGAATCTTAAACTC
GTTCCGAACCTCTGAAAGGGAGAatagaaatactcaaatatcAAGTGTTG
CTTAATCAAGGACGAAGACAAAACGCAAACTAGTTATGATGAATACCCGA
GTTATTTTGAAATTCCGGATTTTTTATAATTATGTTAGCCATAATGTGCT
GTATTACATTCCTCCAATTAGTTAAAAACCAAAAGGCCGAAACTTAACAt
agctttttattttagtagTAAACAACAGTGAAATTCCGGATATTCCCGgt
acgaaaaaactaaatttttagacacccctttctcacagacccggtagaat
tttttcagccagtagggataaaaataaaggagtgcaactcgatggggatt
gaacttctcatattttttatgaatgggatttcaattcttttgttttcaag
tcgagAAATTCAGTGgtgatgggaaaaatagcattatATTTTTCagcgag
gattggtttattattttcagtggggacaaaaatcgGTGTATAATTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00021966-protein

>TCONS_00021966-protein ID=TCONS_00021966-protein|Name=TCONS_00021966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
HRPPPTAQMSSFNTTYSNLLYTTISPIIGTLVVILNSIEYFCIRRIEKLE
RSQSTNILYIKSLCISDILAGVFMIILKSMNPFMDNQLKGNKAAEEIYLI
LRLVFIRFSLFSSIFNLTAMTLDRYTSIFWAIQRRNQRKSFVYKIILGTW
VFSLMAVLIIYCIHRWGIEPGNSLMSLVFPISSYPVTLIYLFCYTKIYLW
IRNRSRTNVSVVSKEQPIEGQKEARDQGNRNNKQEMRFLRLAVLTVIIFV
VCWIPVSTCNIVSVSGGTCGTRDVTSTLFTLAFFNSVLNPIIYLLHVRGK
LKKCFNRRNTVSGILNSFRTSERENRNTQISSVA
Run BLAST on NCBI

transcript from alignment at sc0000401:185770..190071+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021966 ID=TCONS_00021966|Name=TCONS_00021966|organism=Clytia hemisphaerica|type=transcript|length=4302bp|location=Sequence derived from alignment at sc0000401:185770..190071+ (Clytia hemisphaerica)
CACCGCCCACCGCCCACCGCCCAAATGTCATCGTTCAATACAACGTACAG
TAATCTCCTTTATACAACAATATCGCCCATTATCGGCACCCTCGTTGTTA
TCTTGAATTCAATCGAGTATTTTTGTATCCGTCGTATTGAAAAGTTGGAG
AGGAGCCAATCGACGAATATTTTGTATATCAAGAGTTTGTGTATCTCCGA
TATCCTGGCTGGTGTGTTTATGATCATTCTGAAAAGCATGAATCCATTTA
TGGACAACCAGTTAAAAGGTAACAACCTTAAGTTAGAGTAGTGCCTTTTC
AGAGCTAAAAGCTGTACtaaggcccgggggggggcactcgatttctaaac
gaagGCATGTGCTgccaaaaaattgacttttcacaATCGGACCTTTACAG
TGTAGCTCTTGAAGAGGGAAGAGGTACCTTTTaagtgcattttaccgaac
aTTTCTCACCCTTACAGTATATTTTGATTGCATGCATATATTATTTTGCT
GAAACCACCCCCAAAATGAGCCTTAAATATCGCGACATAAAgtgaaaaac
aaatcaaaatggatgCAAAAGAAAATTCTACTCAAGAGACTGGAGAAGAT
GATTGTCATTCATAGCCTATACCAATTTTTTCACTTATCTTTATCTAGGT
AACAAAGCTGCAGAAGAAATATATCTCATCCTTCGTTTGGTGTTCATTAG
GTTTTCATTGTTCAGTTCAATCTTCAATTTGACTGCAATGACGCTTGATC
GGTATACAAGTATCTTTTGGGCAATCCAACGacgaaatcaaagaaaatca
ttCGTTTACAAGGTAAAGCTGTCAgtgtaaaagaaaataaactcttttta
taagcataacgtagcatacttaggctcaatTTCGGTAAAAAACgagcata
atgctaagcatacctccaagctgaaatgTTTAAAATTCGTGGAGCTTTTT
TAAAACGCTGAGCTTTTAGGGTTACATCTGGCGGATTCTGGATTTATGCT
TAGACttcgatttgttgattttctttggggcaatgaaaatttctaaattt
taagcCTGAACTTCTTTGTAATTTACTCCCGCAGGCGAAAATCTTTGGGT
CTAAGAAAGCTCAAACAGTTTTAAGCCAAGTTTGCAGAGTGTGCCACGTT
TTTTTGAGATCTCGAATGCACAACTCGGAAAAATTCGAGTGCATGTGCAA
AACttgaggttttcaggtgcaagtCCAGACGGTTTTTTAACCCCAAGTGA
AAAGTTCAGCTTACGCTATTTTCTCCTCAAGTGcagctaattttagcaat
tttttaccttttttgggccaatttccgAGGTATAGGTGCACCTTGTCTGG
ACAAAATTTATCAGACGCGCTCTTCCAGTGTGGAACTTGGTATTTCCTAA
TTTTTTTCACGAGTGCAGCcttgccatactctgcaaactggcgCGTAAGC
TTATTGAGCCTCCacctgattttttttctcattaagCTGCTTACATCCTT
TAACAGATTTGTATTTTAGTACTGGATTAATTGGTATGGGGAATAAAATT
TTTGACGAAATTCTCCAGATTAAATCCCCGGCAAAATATTGAATCCGAAA
TTATAAATTACTTTATCCAGCGAAACGATACAGAACCGATGTAATAAACA
AAACTTTCTTATAACCATCTAGATCATTTTAGGGACATGGGTATTCAGTT
TGATGGCTGTCTTGATCATCTACTGTATTCACCGTTGGGGAATCGAACCA
GGTAAATTATTGGCCCCTTTGAACTACTACTGTTGAATCTCTTTAacgac
acccctgtctcacagccccggtggaactcttttcctcagtggggataaaa
attcctattgaaatcccaatgggggatagaaattctattgctcaAAGGCT
AAgaaatccagtgggatggtttgGGAGTgccatttttaaacatttaattt
cgagtgGGAATGAAAtctaagtcaatttcccagtggggctgaaattccag
ggtattttcctaccggggacggaatttttgtcaaatttttcaggtggggc
tgggatcccagcgggtctgtgacacagggatgtgcTATGGTAAGACATTT
ACATGCAAAGTGAGTCATGGGTGTTTAACGCAAGCCTCTACGACTGGAAT
GTctccttaaaggttttgtttttaaataagagtgatatcgtttgcttact
catcaattttaatttacaagctttttggtATTGAATTTAcaaggatgtgg
agcaagattggtcagaaacaggaaaagaaaaaccgttttttgcttatata
acacaatataacaatagggagacactgtcctgatatgaaacatgtgtctg
acaTGAAGCGGGAACACttatatgtaaaaataaaatcttttaaactctTA
ACAATTTGCCTAATATAGATCTAACTCCATAGTTCAGAATTTCCTTtaaa
ttcgaacaaatttatgTTCCCCGTGCGTATTCGATTTACGGAGACTCAAC
TATTTGATTGTTGATGATATTCCTAATCTATTGAAAAGGCACTTTAATCA
AATGAATTTTGGCGTAATCATAAATGAGCACAAAAATTAATTTGCAGAGT
CAGAAAATAATCGGAAGAGTTTGTGTAGATCAAATTTTAAGAACGCACAG
CCTAAAATTAGCTCCAAATGTTCCTTGATATAAAGATTTACAGAAATATA
AGATACATATAGTTTCGTAGGAtttaaatacaccttttcgaccgtagtcg
caggatcaggcgcgtgccacccactaaactcgatccaatccttttttgac
acatttttctattgtctataggtgcgaaaaaaggactgggacggttttag
tgggataaagcggacgaaaaaatgcccgcgcggcaattggcggctacggt
cggaAAAGTTTGGGAGAATTTAATAATCTAAATCATTCATTTACACAGGA
AACTCATTGATGAGTCTTGTATTCCCAATTTCGTCATACCCAGTAACTCT
CATCTATCTGTTTTGTTACACTAAAATCTACCTTTGGATACGCAATCGGT
CAAGAACTAACGTTTCGGTAGTCAGTAAAGAACAACCGATTGAAGGACAG
AAAGAGGCGAGAGACCAAGGAAACCGAAATAACAAACAAGAAGTAAGGAT
ATTTCCTAGTTTTCATCCACCCATTGTAAGGGTGTACTGTAATTGGATAA
ATTTCCGCGGGGATAAAATTTCACGGTCAATCTCATCcgtgaaattttta
aattttgttgatgGCTTACCAGGAGACaacattttcatgattttgtgtCT
CTTTTACTGTCAAATTATACATGCTGTTGTTGGTGCATTAcgtattagcg
cttctttgatgccagttaACATTTTAGAAGGAATTTATCTGACATGTTTT
GAGTTGTGTTTCCTTATATTGTATAGCAGTATACAATATAAGGAACATAT
TTCATCATTTTCCAAGTCGCAGTGTCCGTCAGCGCCGagattcctactcc
ttcgtgggtaggacccaccCCGAATGCTAAATTTTCTCAtcatttccttt
ttttccaGATGCGATTTCTGAGACTTGCCGTTTTGACTGTTATTATTTTC
GTGGTATGTTGGATTCCTGTATCGACGTGCAACATCGTATCCGTGTCAGG
TGGGACCTGTGGGACACGTGACGTCACATCCACATTGTTTACGTTGGCTT
TTTTCAATTCAGTACTGAATCCTATTATTTATCTCCTCCATGTTCGAGGC
AAATTGAAAAAGTGTTTCAATCGACGTAACACTGTCTCAGGAATCTTAAA
CTCGTTCCGAACCTCTGAAAGGGAGAatagaaatactcaaatatcAAGTG
TTGCTTAATCAAGGACGAAGACAAAACGCAAACTAGTTATGATGAATACC
CGAGTTATTTTGAAATTCCGGATTTTTTATAATTATGTTAGCCATAATGT
GCTGTATTACATTCCTCCAATTAGTTAAAAACCAAAAGGCCGAAACTTAA
CAtagctttttattttagtagTAAACAACAGTGAAATTCCGGATATTCCC
Ggtacgaaaaaactaaatttttagacacccctttctcacagacccggtag
aattttttcagccagtagggataaaaataaaggagtgcaactcgatgggg
attgaacttctcatattttttatgaatgggatttcaattcttttgttttc
aagtcgagAAATTCAGTGgtgatgggaaaaatagcattatATTTTTCagc
gaggattggtttattattttcagtggggacaaaaatcgGTGTATAATTTT
CT

Coding sequence (CDS) from alignment at sc0000401:185770..190071+

>TCONS_00021966 ID=TCONS_00021966|Name=TCONS_00021966|organism=Clytia hemisphaerica|type=CDS|length=5025bp|location=Sequence derived from alignment at sc0000401:185770..190071+ (Clytia hemisphaerica)
CACCGCCCACCGCCCACCGCCCAAATGTCATCGTTCAATACAACGTACAG
TAATCTCCTTTATACAACAATATCGCCCATTATCGGCACCCTCGTTGTTA
TCTTGAATTCAATCGAGTATTTTTGTATCCGTCGTATTGAAAAGTTGGAG
AGGAGCCAATCGACGAATATTTTGTATATCAAGAGTTTGTGTATCTCCGA
TATCCTGGCTGGTGTGTTTATGATCATTCTGAAAAGCATGAATCCATTTA
TGGACAACCAGTTAAAAGGTAACAAAGCTGCAGAAGAAATATATCTCATC
CTTCGTTTGGTGTTCATTAGGTTTTCATTGTTCAGTTCAATCTTCAATTT
GACTGCAATGACGCTTGATCGGTATACAAGTATCTTTTGGGCAATCCAAC
GacgaaatcaaagaaaatcattCGTTTACAAGATCATTTTAGGGACATGG
GTATTCAGTTTGATGGCTGTCTTGATCATCTACTGTATTCACCGTTGGGG
AATCGAACCAGGAAACTCATTGATGAGTCTTGTATTCCCAATTTCGTCAT
ACCCAGTAACTCTCATCTATCTGTTTTGTTACACTAAAATCTACCTTTGG
ATACGCAATCGGTCAAGAACTAACGTTTCGGTAGTCAGTAAAGAACAACC
GATTGAAGGACAGAAAGAGGCGAGAGACCAAGGAAACCGAAATAACAAAC
AAGAAATGCGATTTCTGAGACTTGCCGTTTTGACTGTTATTATTTTCGTG
GTATGTTGGATTCCTGTATCGACGTGCAACATCGTATCCGTGTCAGGTGG
GACCTGTGGGACACGTGACGTCACATCCACATTGTTTACGTTGGCTTTTT
TCAATTCAGTACTGAATCCTATTATTTATCTCCTCCATGTTCGAGGCAAA
TTGAAAAAGTGTTTCAATCGACGTAACACTGTCTCAGGAATCTTAAACTC
GTTCCGAACCTCTGAAAGGGAGAatagaaatactcaaatatcAAGTGTTG
CTTAACACCGCCCACCGCCCACCGCCCAAATGTCATCGTTCAATACAACG
TACAGTAATCTCCTTTATACAACAATATCGCCCATTATCGGCACCCTCGT
TGTTATCTTGAATTCAATCGAGTATTTTTGTATCCGTCGTATTGAAAAGT
TGGAGAGGAGCCAATCGACGAATATTTTGTATATCAAGAGTTTGTGTATC
TCCGATATCCTGGCTGGTGTGTTTATGATCATTCTGAAAAGCATGAATCC
ATTTATGGACAACCAGTTAAAAGGTAACAAAGCTGCAGAAGAAATATATC
TCATCCTTCGTTTGGTGTTCATTAGGTTTTCATTGTTCAGTTCAATCTTC
AATTTGACTGCAATGACGCTTGATCGGTATACAAGTATCTTTTGGGCAAT
CCAACGacgaaatcaaagaaaatcattCGTTTACAAGATCATTTTAGGGA
CATGGGTATTCAGTTTGATGGCTGTCTTGATCATCTACTGTATTCACCGT
TGGGGAATCGAACCAGGAAACTCATTGATGAGTCTTGTATTCCCAATTTC
GTCATACCCAGTAACTCTCATCTATCTGTTTTGTTACACTAAAATCTACC
TTTGGATACGCAATCGGTCAAGAACTAACGTTTCGGTAGTCAGTAAAGAA
CAACCGATTGAAGGACAGAAAGAGGCGAGAGACCAAGGAAACCGAAATAA
CAAACAAGAAATGCGATTTCTGAGACTTGCCGTTTTGACTGTTATTATTT
TCGTGGTATGTTGGATTCCTGTATCGACGTGCAACATCGTATCCGTGTCA
GGTGGGACCTGTGGGACACGTGACGTCACATCCACATTGTTTACGTTGGC
TTTTTTCAATTCAGTACTGAATCCTATTATTTATCTCCTCCATGTTCGAG
GCAAATTGAAAAAGTGTTTCAATCGACGTAACACTGTCTCAGGAATCTTA
AACTCGTTCCGAACCTCTGAAAGGGAGAatagaaatactcaaatatcAAG
TGTTGCTTAACACCGCCCACCGCCCACCGCCCAAATGTCATCGTTCAATA
CAACGTACAGTAATCTCCTTTATACAACAATATCGCCCATTATCGGCACC
CTCGTTGTTATCTTGAATTCAATCGAGTATTTTTGTATCCGTCGTATTGA
AAAGTTGGAGAGGAGCCAATCGACGAATATTTTGTATATCAAGAGTTTGT
GTATCTCCGATATCCTGGCTGGTGTGTTTATGATCATTCTGAAAAGCATG
AATCCATTTATGGACAACCAGTTAAAAGGTAACAAAGCTGCAGAAGAAAT
ATATCTCATCCTTCGTTTGGTGTTCATTAGGTTTTCATTGTTCAGTTCAA
TCTTCAATTTGACTGCAATGACGCTTGATCGGTATACAAGTATCTTTTGG
GCAATCCAACGacgaaatcaaagaaaatcattCGTTTACAAGATCATTTT
AGGGACATGGGTATTCAGTTTGATGGCTGTCTTGATCATCTACTGTATTC
ACCGTTGGGGAATCGAACCAGGAAACTCATTGATGAGTCTTGTATTCCCA
ATTTCGTCATACCCAGTAACTCTCATCTATCTGTTTTGTTACACTAAAAT
CTACCTTTGGATACGCAATCGGTCAAGAACTAACGTTTCGGTAGTCAGTA
AAGAACAACCGATTGAAGGACAGAAAGAGGCGAGAGACCAAGGAAACCGA
AATAACAAACAAGAAATGCGATTTCTGAGACTTGCCGTTTTGACTGTTAT
TATTTTCGTGGTATGTTGGATTCCTGTATCGACGTGCAACATCGTATCCG
TGTCAGGTGGGACCTGTGGGACACGTGACGTCACATCCACATTGTTTACG
TTGGCTTTTTTCAATTCAGTACTGAATCCTATTATTTATCTCCTCCATGT
TCGAGGCAAATTGAAAAAGTGTTTCAATCGACGTAACACTGTCTCAGGAA
TCTTAAACTCGTTCCGAACCTCTGAAAGGGAGAatagaaatactcaaata
tcAAGTGTTGCTTAACACCGCCCACCGCCCACCGCCCAAATGTCATCGTT
CAATACAACGTACAGTAATCTCCTTTATACAACAATATCGCCCATTATCG
GCACCCTCGTTGTTATCTTGAATTCAATCGAGTATTTTTGTATCCGTCGT
ATTGAAAAGTTGGAGAGGAGCCAATCGACGAATATTTTGTATATCAAGAG
TTTGTGTATCTCCGATATCCTGGCTGGTGTGTTTATGATCATTCTGAAAA
GCATGAATCCATTTATGGACAACCAGTTAAAAGGTAACAAAGCTGCAGAA
GAAATATATCTCATCCTTCGTTTGGTGTTCATTAGGTTTTCATTGTTCAG
TTCAATCTTCAATTTGACTGCAATGACGCTTGATCGGTATACAAGTATCT
TTTGGGCAATCCAACGacgaaatcaaagaaaatcattCGTTTACAAGATC
ATTTTAGGGACATGGGTATTCAGTTTGATGGCTGTCTTGATCATCTACTG
TATTCACCGTTGGGGAATCGAACCAGGAAACTCATTGATGAGTCTTGTAT
TCCCAATTTCGTCATACCCAGTAACTCTCATCTATCTGTTTTGTTACACT
AAAATCTACCTTTGGATACGCAATCGGTCAAGAACTAACGTTTCGGTAGT
CAGTAAAGAACAACCGATTGAAGGACAGAAAGAGGCGAGAGACCAAGGAA
ACCGAAATAACAAACAAGAAATGCGATTTCTGAGACTTGCCGTTTTGACT
GTTATTATTTTCGTGGTATGTTGGATTCCTGTATCGACGTGCAACATCGT
ATCCGTGTCAGGTGGGACCTGTGGGACACGTGACGTCACATCCACATTGT
TTACGTTGGCTTTTTTCAATTCAGTACTGAATCCTATTATTTATCTCCTC
CATGTTCGAGGCAAATTGAAAAAGTGTTTCAATCGACGTAACACTGTCTC
AGGAATCTTAAACTCGTTCCGAACCTCTGAAAGGGAGAatagaaatactc
aaatatcAAGTGTTGCTTAACACCGCCCACCGCCCACCGCCCAAATGTCA
TCGTTCAATACAACGTACAGTAATCTCCTTTATACAACAATATCGCCCAT
TATCGGCACCCTCGTTGTTATCTTGAATTCAATCGAGTATTTTTGTATCC
GTCGTATTGAAAAGTTGGAGAGGAGCCAATCGACGAATATTTTGTATATC
AAGAGTTTGTGTATCTCCGATATCCTGGCTGGTGTGTTTATGATCATTCT
GAAAAGCATGAATCCATTTATGGACAACCAGTTAAAAGGTAACAAAGCTG
CAGAAGAAATATATCTCATCCTTCGTTTGGTGTTCATTAGGTTTTCATTG
TTCAGTTCAATCTTCAATTTGACTGCAATGACGCTTGATCGGTATACAAG
TATCTTTTGGGCAATCCAACGacgaaatcaaagaaaatcattCGTTTACA
AGATCATTTTAGGGACATGGGTATTCAGTTTGATGGCTGTCTTGATCATC
TACTGTATTCACCGTTGGGGAATCGAACCAGGAAACTCATTGATGAGTCT
TGTATTCCCAATTTCGTCATACCCAGTAACTCTCATCTATCTGTTTTGTT
ACACTAAAATCTACCTTTGGATACGCAATCGGTCAAGAACTAACGTTTCG
GTAGTCAGTAAAGAACAACCGATTGAAGGACAGAAAGAGGCGAGAGACCA
AGGAAACCGAAATAACAAACAAGAAATGCGATTTCTGAGACTTGCCGTTT
TGACTGTTATTATTTTCGTGGTATGTTGGATTCCTGTATCGACGTGCAAC
ATCGTATCCGTGTCAGGTGGGACCTGTGGGACACGTGACGTCACATCCAC
ATTGTTTACGTTGGCTTTTTTCAATTCAGTACTGAATCCTATTATTTATC
TCCTCCATGTTCGAGGCAAATTGAAAAAGTGTTTCAATCGACGTAACACT
GTCTCAGGAATCTTAAACTCGTTCCGAACCTCTGAAAGGGAGAatagaaa
tactcaaatatcAAGTGTTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012331XLOC_012331Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021966-proteinTCONS_00021966-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021966-exon-sc0000401-1491911889:185770..186037TCONS_00021966-exon-sc0000401-1491911889:185770..186037Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1510915933:185770..186037TCONS_00021966-exon-sc0000401-1510915933:185770..186037Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1575043694:185770..186037TCONS_00021966-exon-sc0000401-1575043694:185770..186037Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1491911889:186418..186581TCONS_00021966-exon-sc0000401-1491911889:186418..186581Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1510915933:186418..186581TCONS_00021966-exon-sc0000401-1510915933:186418..186581Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1575043694:186418..186581TCONS_00021966-exon-sc0000401-1575043694:186418..186581Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1491911889:187442..187520TCONS_00021966-exon-sc0000401-1491911889:187442..187520Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1510915933:187442..187520TCONS_00021966-exon-sc0000401-1510915933:187442..187520Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1575043694:187442..187520TCONS_00021966-exon-sc0000401-1575043694:187442..187520Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1491911889:188718..188911TCONS_00021966-exon-sc0000401-1491911889:188718..188911Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1510915933:188718..188911TCONS_00021966-exon-sc0000401-1510915933:188718..188911Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1575043694:188718..188911TCONS_00021966-exon-sc0000401-1575043694:188718..188911Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1491911889:189328..190071TCONS_00021966-exon-sc0000401-1491911889:189328..190071Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1510915933:189328..190071TCONS_00021966-exon-sc0000401-1510915933:189328..190071Clytia hemisphaericaexon
TCONS_00021966-exon-sc0000401-1575043694:189328..190071TCONS_00021966-exon-sc0000401-1575043694:189328..190071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:185770..190071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.658055	0.92071	0.161975	0.367962	0.0385836	0.0304893	1.14031	1.3086	8.14918	4.36016	4.52195	5.01142	0.380567	0.632356	0.195071	0.296391	0.472521	0.264174	0.851598	1.24123	0.663908	0.485746	0.590488	0.328069	0.153592	0.0822465	0.156977	0.37682	0.412829	0.291345
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top