TCONS_00022632 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022632
Unique Name	TCONS_00022632
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2801

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000429:16978..21745-

transcript sequence

>TCONS_00022632 ID=TCONS_00022632|Name=TCONS_00022632|organism=Clytia hemisphaerica|type=transcript|length=2801bp
GAGGAAAGATGTTGAAGTCATGATGAAAGCCAACGGAATGCGTGCAAATT
TGGTGGAAAACATGATTCTGATGTTGGAGAAATATTCGAAAAGTTTGGAA
GAGATTGTGGACGACCGAACGGCTTCGTTGAGGGAAGAAAAACATAAAGT
AGAAGCTCTTTTGGAGCGCATGTTACCCAAATCTGTTGCCAACCAACTTA
TGCAAGGAAGAGAGGTCGAAGCTGAACTGTTCGAAGAAGTCTCAATATAC
TTCAGTGATATCGTTGGCTTCACCAGTATCTGTTCCTCCATCACACCCAT
GGAAGTGGTCAATCTTCTTAATACTCTCTATACCATGTTTGACAACATTG
CTAGAGATTATGATGTTTATAAAGTTGAAACGATCGGCGACGCATACATG
GTTGTGTCTGGACTTCCCATccgaaacaaaaaacaacacgCAAAGGAGAT
CGCTCTCATGTCCCTCGATATCTTACGTAACAcgaaaacattcaaaatca
gACCTAAtcaacaacaaatcaaaatcCGGATTGGACTACATACCGGCCCC
GTTGTAGCTGGAGTTGTGGGAACCACGATGCCCAGATATTGTTTATTTGG
TGACACGGTGAATGTGGCGGCCCGTATGGAATCTACTGGCGAAGCACTTC
GTATACAAATCAGTGAAGAAACGAAAAACACGTTAGCAGCATCATCAGCC
TCCATTGCCAACGAAGAATTTCTGGTAGAGCCACGTGGTTTCACAGATGT
TAAGGGTAAAGGCAATGTTCAAACGTACTGGCTAGTTGGCATGCGTGAAA
ACCTGACTCAGCACAATATTTTAAAACGAGACCAAGACTCTTTATATAAA
CATAATACCTCGTCATCTTTTCAACGAATCATTAGAGACTCACCGAAAAA
TTCACGCCACAAGAAATTACATGTCACGCCCACGGGTACTGATTTTTCAA
GGACACCGCCCTTAAATCCGCCCTTGAGTAAAGAACAAAGAGcgaaaaac
tatttcaaatcaCACATGTTACCGATGTGCAAAAAGATCGGGAAAAATAC
ACAAGTGGAAATTTCGGACTATAATAATAGCGAAACGCAAAACCTGATAC
GGGGTTCACATTTCAACGGATCACCGATCGGTGTTGAATACCACAAGCGA
AGTGAAAATGCAAAATCACATGATTCGCCAAGACCAGTATGACACAtgca
tttgattttttgaattatttttttgttgctgTTTGTTTCATATTGATTTT
CTTGGAAAAAGGAAttcatttcatattttttctgCCCTTGCTTGAATGCT
GGTTGATGGCatcttggaaattttttcatgaGTTATTTATCGGCCTTGCT
TTGATGTTGATTTACAACAAGCTGGTAATGACGTCATGTATTTCGAAATG
GAGATGGCGTAACCATGATGTAATTTTAATGTAACTTGAATGGCTGGTTG
ATGATTTTAttagttatttaaaaaatgcaaaacatGATTTGGTTTTATGA
TCCGAAATTTCTTTTACTTGGATTTTTTATTGACCAGACTAATatttttc
cctttaattttttaaagaccTTTATCCACGACTGACTGCCTAATTTTTTC
TCGGAtttcgatttttatttttaatgaatctcaaattttcaattaaaact
gacaatttttatggatttttaaatTGCCAAATTCCTTTAAATAAGATCTA
GAAAATCGAAGTTTGACTTAAAGTTATGTAAAAgtattcaaaaattgaaa
ataacctAATAAGTTTTTAAATACATTTAAGCATTCATTCCAAAATACAT
TTATTATACATTTTCCTGTATTACTTATTTAGTCAtgatttttagatatt
ttttttctGTCTATATTGTTCAAAGAAttagtttcatttttaaatGCACT
TACGCTTAGGATTCTTAGCATATGCACCTTTTTACCTTCTGTTTTCATGA
TATTTTAGTCTTTCATATGCATATTTAGGAAAATGATTTATCACTCGTTA
AGAGTATCTCGTATCGACTGCTTTCCATGGGAATAATGTAAAAATATTCA
AGACTGAAGAAAAATTTGCCATGATTCTCAGAGACTTTTCTCGTGTGCTA
TAGGATCTTTTTAGTATGGCTacatacacccccttctcacagacccggta
ggatttttctagccagtggggataaaaataacgaactgaatctcgatggg
gattgatattcccatatttttcatgactggggatttcaattcctttgttt
ttaagtcagaaaattcagtggggatggaaaaaaaaaatattttgcagtga
ggattggtttatttgattattttcagcggggacaaagattggaggaaaat
tttccaccggggacgattttttggccagtttttccagaGAGAAGAAGGGG
GTGTAATATGGCTGATACAAAAGTATGTTTTCCCTATATTACATACAGTA
TaggttttttcatatttttagttACTTTTTTTAAGGCTCGGTTTCTCCCC
CAAAGTTCACCAGACTTTACTCAAACCAAGCTTGTTTAGTTAGTTTCCAT
TTTTGTTTCTCCGGAGCACAtacatttttaaagaaattttcaatagtttt
ttttttcgccTCTTTGTATATACTGTTGTTATATTATATATGCTTGTAAA
ACAATCATCCTCACCAGAGtttattaaactaaaatgaagAAATTATTTCC
CTAAAAACtatattattatattaatattattcTATAATAACATGCGAAAT
ATTGTACGACTTATTTAGATAAAAAAGAATCGATGAAaaagttttgacaa
a

Run BLAST on NCBI

transcript from alignment at sc0000429:16978..21745-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022632 ID=TCONS_00022632|Name=TCONS_00022632|organism=Clytia hemisphaerica|type=transcript|length=4768bp|location=Sequence derived from alignment at sc0000429:16978..21745- (Clytia hemisphaerica)
GAGGAAAGATGTTGAAGTCATGATGAAAGCCAACGGAATGTGAGTTGATT
CGTTTTTAGTACCTTGAATAACGCTCGTCTTTGAATTTACCGCAAGTTCG
ACACCCTCCTTAGAGATCTGAATAATAGGAAGGTCAGAATCACTGGCTGA
CAAAAACCTTTTTTCTCTTTGACTGCCAAGGAAAGATATATAGTTTCAAT
CGTGATTATTGATATATTTTTCTTTCTTTATCAGGCGTGCAAATTTGGTG
GAAAACATGATTCTGATGTTGGAGAAATATTCGAAAAGTTTGGAAGAGAT
TGTGGACGACCGAACGGCTTCGTTGAGGGAAGAAAAACATAAAGTAGAAG
CTCTTTTGGAGCGCATGTTACCCAAATCTGTTGCCAACCAACTTATGCAA
GGAAGAGAGGTACTTTTTATATTTTAATGCCGTCTTCTGATTTGCATCAA
AATCAATTCATTGTAGTTCTTTATGTTAAACCTTTTTTAAAACGCCTCAA
TCTCTTAGTGGCCGGGTAGCTCAGTTGGTAGAGCATTCGCCTTACATTCT
AAGGGTTGTGGGTTCGAGCCCCGGTCACCGTCGATTCAGCGAATGAGTAG
CTTATTAGATTGGATAATCGGATCTAGGCGATACGTTACAGGGAGCTAAG
ATCTCTCAAGTTTGACGCAAATAGGAATAGGGATAGACTCCCTCACTCCC
GGCTCCGCCGGCAGCCACCAGATGAACATACTTACTTACAATTTCTTAAT
GTCGGCTCATCTGCTCTTTTGGACCTGTTTTTGGTCACTAGTTTGTAGCC
TTTTAGTTAGAACCTCGATAGTTCAAACTTTGTTGGAGATGTTACAATCA
TTTTTCATTCCCATTTCTTTAACCACAGGTCGAAGCTGAACTGTTCGAAG
AAGTCTCAATATACTTCAGTGATATCGTTGGCTTCACCAGTATCTGTTCC
TCCATCACACCCATGGAAGTGGTCAATCTTCTTAATACTCTCTATACCAT
GTTTGACAACATTGCTAGAGATTATGATGTTTATAAAGTAAGTCGATCAT
TCGTTTTCTTTGTTTTTATTAGCCTGTACCACCGCGCCCACAGGCGTTTA
TCATATTTTGAAAAAACTTGCCGTGTGTCGGTTGGTTTTGGTTAGCGAAA
TTCTTTGTCTCAGTTTGTCCCAGTTTTCTGGGACAAAATCCTAAAAAACA
CAAGCGTGGGAGTGCTCTTTTGAAAATGAAAGATATTGCATCGACGCCCC
ACATCCGTGTCAATTCAATGTTAAAAAGCTTGTGAATTAAGATTGATGAG
TAAGCAAACGATATTACTCGCATTTAAAAACACAACCTTTAAGACTGCTC
TTCTCCACATACTTAGGTTGAAACGATCGGCGACGCATACATGGTTGTGT
CTGGACTTCCCATCCGAAACAAAAAACAACACGCAAAGGAGATCGCTCTC
ATGTCCCTCGATATCTTACGTAACACGAAAACATTCAAAATCAGACCTAA
TCAACAACAAATCAAAATCCGGATTGGACTACATACCGGCCCCGTTGTAG
CTGGAGTTGTGGGAACCACGATGCCCAGATATTGTTTATTTGGTGACACG
GTGAATGTGGCGGCCCGTATGGAATCTACTGGCGAAGGTAAAATGTTCTT
CTTGAATGTAAATTTCAAATATCTACTTCATATCTAATTAATTATTAGCC
TAGTTAACTAAGCCCGTATTCACAAGGCTAGATTCAACACACGGCTAATG
GCATTATAGCATTTTCGGCGCTTTAAAGATTATATTTACGGATTTTAAGT
TTGCCTTTGAATACTGTTATTCAGTCACAACTAACCATCAGATTTATCCT
AGTGACTAAATCAAACTAGCTTAGCTTTCTAGGCTACTTATTATCTCTCC
TCTTGTGTTAAACTGTCTTTTATCATTTGGGTAATGATTCATTTACAAAG
TTAGTCAAGCTCATAGAGTCAATGAAAAAAAAACACTACATTCTGTTCTT
TAACTATAATCTGTTTTTATCGTTTTATATTGTTGGGAATGGTTTTTTTG
TAATTGAAAAAATGGCTTAAATCTTAATTTTCTCATTCTATACTTAAAAC
AGCACTTCGTATACAAATCAGTGAAGAAACGAAAAACACGTTAGCAGCAT
CATCAGCCTCCATTGCCAACGAAGAATTTCTGGTAGAGCCACGTGGTTTC
ACAGATGTTAAGGTATGTTTTCCATATATTCCCTTCCCCATAATTGGTCT
GTTTTTTTTCCTACCCTGGTTGTTGTTTCTCGCTAAACGATTTTTGAAAG
TGTTTCGCCTAGAAGAAGAGACAATGTCTCAGAATAATGTTATGTTTCCT
ATAATTTTATTTTTTTGTCTAATTTTTTGAATTTGACCTTTTTCTTGACT
TGAATCTATCACGTTTTCACTTACATGACAACCAATCCCCAATAGGCTTT
ATTTCTATTATTAAATTCTATTTATCACGACGTATTACTTTTACTTTACG
ACGTAAATACTTCTCCATTTTTACATACACTTGACTCTCGCTTATTCGAA
TTCAAAGGTGGTGCTCGAATTACGGAGAGCAGATTCGAATTATAGAAGGC
ATTTTACTAAGGATCCTCCTTGACGGGGACAGTGAATTGGTTCGAATTTT
TGAAATAGTCGAATAGTAGAAGTTCGAATTTAGGAAAATCTACTGTATAT
ATGTATTCATATTTTCTTCAGGGTAAAGGCAATGTTCAAACGTACTGGCT
AGTTGGCATGCGTGAAAACCTGACTCAGCACAATATTTTAAAACGAGACC
AAGACTCTTTATATAAACATAATACCTCGTCATCTTTTCAACGAATCATT
AGAGACTCACCGAAAAATTCACGCCACAAGAAATTACATGTCACGCCCAC
GGGTACTGATTTTTCAAGGACACCGCCCTTAAATCCGCCCTTGAGTAAAG
AACAAAGAGCGAAAAACTATTTCAAATCACACATGTTACCGATGTGCAAA
AAGATCGGGAAAAATACACAAGTGGAAATTTCGGACTATAATAATAGCGA
AACGCAAAACCTGATACGGGGTTCACATTTCAACGGATCACCGATCGGTG
TTGAATACCACAAGCGAAGTGAAAATGCAAAATCACATGATTCGCCAAGA
CCAGTATGACACATGCATTTGATTTTTTGAATTATTTTTTTGTTGCTGTT
TGTTTCATATTGATTTTCTTGGAAAAAGGAATTCATTTCATATTTTTTCT
GCCCTTGCTTGAATGCTGGTTGATGGCATCTTGGAAATTTTTTCATGAGT
TATTTATCGGCCTTGCTTTGATGTTGATTTACAACAAGCTGGTAATGACG
TCATGTATTTCGAAATGGAGATGGCGTAACCATGATGTAATTTTAATGTA
ACTTGAATGGCTGGTTGATGATTTTATTAGTTATTTAAAAAATGCAAAAC
ATGATTTGGTTTTATGATCCGAAATTTCTTTTACTTGGATTTTTTATTGA
CCAGACTAATATTTTTCCCTTTAATTTTTTAAAGACCTTTATCCACGACT
GACTGCCTAATTTTTTCTCGGATTTCGATTTTTATTTTTAATGAATCTCA
AATTTTCAATTAAAACTGACAATTTTTATGGATTTTTAAATTGCCAAATT
CCTTTAAATAAGATCTAGAAAATCGAAGTTTGACTTAAAGTTATGTAAAA
GTATTCAAAAATTGAAAATAACCTAATAAGTTTTTAAATACATTTAAGCA
TTCATTCCAAAATACATTTATTATACATTTTCCTGTATTACTTATTTAGT
CATGATTTTTAGATATTTTTTTTCTGTCTATATTGTTCAAAGAATTAGTT
TCATTTTTAAATGCACTTACGCTTAGGATTCTTAGCATATGCACCTTTTT
ACCTTCTGTTTTCATGATATTTTAGTCTTTCATATGCATATTTAGGAAAA
TGATTTATCACTCGTTAAGAGTATCTCGTATCGACTGCTTTCCATGGGAA
TAATGTAAAAATATTCAAGACTGAAGAAAAATTTGCCATGATTCTCAGAG
ACTTTTCTCGTGTGCTATAGGATCTTTTTAGTATGGCTACATACACCCCC
TTCTCACAGACCCGGTAGGATTTTTCTAGCCAGTGGGGATAAAAATAACG
AACTGAATCTCGATGGGGATTGATATTCCCATATTTTTCATGACTGGGGA
TTTCAATTCCTTTGTTTTTAAGTCAGAAAATTCAGTGGGGATGGAAAAAA
AAAATATTTTGCAGTGAGGATTGGTTTATTTGATTATTTTCAGCGGGGAC
AAAGATTGGAGGAAAATTTTCCACCGGGGACGATTTTTTGGCCAGTTTTT
CCAGAGAGAAGAAGGGGGTGTAATATGGCTGATACAAAAGTATGTTTTCC
CTATATTACATACAGTATAGGTTTTTTCATATTTTTAGTTACTTTTTTTA
AGGCTCGGTTTCTCCCCCAAAGTTCACCAGACTTTACTCAAACCAAGCTT
GTTTAGTTAGTTTCCATTTTTGTTTCTCCGGAGCACATACATTTTTAAAG
AAATTTTCAATAGTTTTTTTTTTCGCCTCTTTGTATATACTGTTGTTATA
TTATATATGCTTGTAAAACAATCATCCTCACCAGAGTTTATTAAACTAAA
ATGAAGAAATTATTTCCCTAAAAACTATATTATTATATTAATATTATTCT
ATAATAACATGCGAAATATTGTACGACTTATTTAGATAAAAAAGAATCGA
TGAAAAAGTTTTGACAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012710	XLOC_012710	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000429	supercontig	sc0000429:16978..21745 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60887e-07	0	0.281434	0.164707	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.125808	0	0	0	0	0	2.13517e-06	0	0

Blast

[Close]

BLAST of TCONS_00022632 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.342e-76
Identity = 143/257 (55.64%), Postives = 193/257 (75.10%), Query Frame = 2

Query:   44 ANLVENMILMLEKYSKSLEEIVDDRTASLREEKHKVEALLERMLPKSVANQLMQGREVEAELFEEVSIYFSDIVGFTSICSSITPMEVVNLLNTLYTMFDNIARDYDVYKVETIGDAYMVVSGLPIRNKKQHAKEIALMSLDILRNTKTFKIRPN-QQQIKIRIGLHXXXXXXXXXXXXMPRYCLFGDTVNVAARMESTGEALRIQISEETKNTLAASSASIANEEFLVEPRGFTDVKGKGNVQTYWLVGMRENLTQ 811
            +N+++N++  +E+Y+ +LEE+V++RT +  EEK K EALL ++LP SVA QL +G  V+AE F+ V+IYFSDIVGFT++ +  TPM+VV LLN LYT FD +  ++DVYKVETIGDAYMVVSGLP+RN + HA E+A M+L +L   ++F+IR   Q+Q+++RIG+HTGPV AGVVG  MPRYCLFGDTVN A+RMES GEAL+I +S ETK  L           F +E RG  ++KGKG V+TYWL+G R + T+
Sbjct:  810 SNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGG------FELELRGDVEMKGKGKVRTYWLLGERGSSTR 1060

The following BLAST results are available for this feature:

BLAST of TCONS_00022632 vs. Swiss-Prot (Human)

BLAST of TCONS_00022632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ANPRA	2.342e-76	55.64	Atrial natriuretic peptide receptor 1 OS=Homo sapi...	[more]

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TCONS_00022632 (transcript) - C. hemisphaerica