TCONS_00023493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023493
Unique NameTCONS_00023493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023493 ID=TCONS_00023493|Name=TCONS_00023493|organism=Clytia hemisphaerica|type=transcript|length=2403bp
CGTCAAAGCAATAttagatttttgatattttgaaagcGTAAGCCAAGATC
TGGAACAATAATGAATGCAAACGAATTGTATATCACACTTGCTGCCATTC
AAGGCGAGTTACAAAATACAGTTGGCGAGTTGTTTGCTATGTTTTGCCTC
GAAAATAAAGATGGCGGGGAGAATCGACATGCAACACAAGCTTTCAGTAC
TATCTTGAAGAAATGTAAAGATTTGAATCAACTCGAAACGCTGGAATACG
GTTTCATTAAAAATCGTATTTACGATACCAATGATGAAGGAGAAATGGTA
TTACGAGAtgaaatcaatttgaaaattcTGGACACTTTATTTTTGTATGA
CTCAATGAAAAACTTGAAAGGTTTTCCAACATTTCAGGAGAAATTACAAC
ACAGACGCAGGCTAAAATCTTGTAAACAAGCTTTACATCAACAGTGTTGT
TTAGCCTGTAACCAcaaatgtaaaaaatgtgatAAGAAAGAATGTAAGGA
TGATTCTTGTCATCCAGgggctaaatgtaatcaacacCCCTGTCGCAATT
GTGACGAAACTAAGGAAATTTGTCTCCATTCTTCAAGTATATGCTGCAAA
AAATGTGAGACTTGTTTTTATTGTGGCTCCAAAATGAAGTTAGAAGTTAG
CGAACGGTGTAATAGACTACGGCTAACATGTGGACTTGAAACATTGAGAA
AATTTCGACAACTTTTagagaaattgacttttaaaGATTGTGAATTGTTG
CTAGATGGTAAACATACCTTACCGGGTTTCCAGCTCTGTAGAAGTTTCCG
AGAACTTTCTGATTATTTGTTGAAAGCTTATAAAGAAGTTTTGAATTATA
TGTCGATCGCAGAACATTTTATCAAACAACAACCTCTTTCTtctaaagat
attcaaaagaaAGTTGACAGCCTGGCTACAATTTTTAAAACGGAAGATCG
TGATTGGCTGTTGTACATGCagcatgatgacgtcattaagaTTTTAGGAT
TCATTAATGAAGCTAGAGCCCAACCCTCTGAAGAATATCATTACGTCATc
aataaaattgaagaattgaaatcagACGAGAAATTTAAGAGACACAGGAG
TGAAGTTATGGTCGAACGTGAAAATGGGGACTCTACTGGCAGCTTATCAA
GAGATGTGAATTTTAACTTGGAAAGTGTAACcataaatgaaattgaaaat
tctaaaagtgaAATCGAGACAAACGAAAACGAAGTCTTCGAAACAGAGAC
TTTAAATGAACAGCTGATAAATAATGATTCACAACAACACGAGGAAGACG
TAGCTGTTGCCAAGGTAACCGGAGAACATGAAGGCGAGGCTACATCAACT
GATGTTACCGATTCAACAACTTTAAAACCtgaattaaaagaaaatgaggg
CACTGATGTCACCTCGGCAGATTTCCGACCTGAAGAATCAGCAAGAAGCA
AATGTGAATCTCCAGTCGATTATGAGTTGAACAAACAACCAGATTCTAAA
ACGTCTATTCATTCTAGAACCGACCCAGAAATGATTGAAGTCATCAACAA
CTTGCAACAATCAGTAGACGAGCTGAAGGAAAGTTCAGTGACTTATCAAA
AAGANTAACAACTTGCAACAATCAGTTGACGAGCTGAAGGAAAGTTCAGT
GACTTATCAAAAAGAACTGGATGAAAAATTACAAACTTTTGAACTTGAAC
ATATTGAAACATCATCTAACGTTGAGGAAATGAACAATAAAGTGCTGAGT
CAGCTTTCCGTTGTCATGGAGAAGTTGGTTACCATGGAGGAGCAAAGAAA
GGTCGAAGCGGAACGGCAACAAGCGGAAATtgaagaaatcaagaaaaatc
agaaaaagttgtTAGAGATGCTTGAAAccaaacagaaagaaaaagAGTCC
ACTAAAAGCAAGTTTACCAAAATCAATATGCTATCATCGTGCAAATGAAC
AACTTCCCTGGTGAGAGGTATTATTATTAAGTGCAATGGCAAACACGGCG
ATCTTCAATCGGATTTATCGCATTcaataaaaagtttaattttggttgtg
aagaaaaattaatgaagttgaaaaaaaggatttttcctTTATCCGATACA
GAACAATTTAAATCGTAGGATAGAGTTATTTTATCGATACActctttttt
gtataaaaacgaTTATAGGCAAGCGATTATGTTAACTGGAAATTCGGTCT
ACTGTTTTCGAGGATCAATATGCCAAACGATAAGAACAGGTGAGACTCAA
CTAAAATTTTAgtcgttcttataaagaaaagagTGTACTCATTTTTAGAT
TTGTAAAACTGAAattattttaatctaatgaaagAATTTTGTGTTTATTT
CTTagttatattttaattttattttagttaaaattttttagTTCTGAATT
TTT
Run BLAST on NCBI

transcript from alignment at sc0000455:82587..91270+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023493 ID=TCONS_00023493|Name=TCONS_00023493|organism=Clytia hemisphaerica|type=transcript|length=8684bp|location=Sequence derived from alignment at sc0000455:82587..91270+ (Clytia hemisphaerica)
CGTCAAAGCAATAttagatttttgatattttgaaagcGTAAGCCAAGGTA
GGGCAGGTAGAAATTCACAAATAGAGATTTATATGTTCTTTTGGATGtag
agttttgatttttcaattttactttttgtttttgaagtaGATAACACcgc
cctcttctcacagacccagtggtcTGTAGGGGTATAAATAGcgaactgaa
actcgatggggatcgatATTCCCTTAACTTTTATGACCAGGGattcaaat
tcttttgttttaaagtcagAAAAATTCAGTATGGATGGTAAAGTGGGGAC
GAAAATGggggtataattttccaccgggaacgatattttggccaattttt
ccagtggggagggttggcagtgggtctgtgagaagagggtgtggTAGAGA
GAGAGGCTTAACTTTTCAATATCCATCCTCTCGATCCATCATAGGGAATA
AGGTAGCCATCTCTGATACATCCTATCAACCCTTTCTAAAAGATCCCTGT
AAAGGGATTGGATTCGAGTTTGCCAGGATCGTCAAATGTGTGAAGTTATT
GAATTTGTGTACTCACCCAAATACTGATATTTTGCAGTCATTTGACTCTG
GCTTAATTAAACCCAGTTTTCTTGTGACGCTAGGATTATTGGGTTTATTG
AAAACCTTAATGGTGTAAATAACTCAATCTTTTTAGAATATAGCGTGGAA
ACTCTTTAACTTAAACCACTATAACTCAAATGCCTTCTTATAGAGAACAA
GCTTTCTAGTTCCTTCAATTAACAAAACCTCACTCGATATCTCGagattt
ttttaactcaaacctTATTGCGTTCCTCATCTTCGAAATGTGGAGACTCC
GCACGCTTAATTTGCTCTCTGTTACTCGTCCTTGACAGAGTTCACAAATT
TGTCAGAGTTAAAACCACACTTTTAAAGGCTGATAGATATATTATAGATA
GATTCTAGTTACAGAGGTTCGACCTATGGAGAGCGTCTACCATATTATTG
TCCTATAATGTCCTTTTTTTATAGATCTGGAACAATAATGAATGCAAACG
AATTGTATATCACACTTGCTGCCATTCAAGGCGAGTTACAAAATACAGTT
GGCGAGTTGTTTGCTATGTTTTGCCTCGAAAATAAAGATGGCGGGGAGAA
TCGACATGCAACACAAGCTTTCAGTACTATCTTGAAGAAATGTAAAGATT
TGAATCAACTCGAAACGCTGGAATACGGTTTCATTAAAAATCGTATTTAC
GATACCAATGATGAAGGAGAAATGGTATTACGAGAtgaaatcaatttgaa
aattcTGGACACTTTATTTTTGTATGACTCAATGAAAAACTTGAAAGGTT
TTCCAACATTTCAGGAGAAATTACAACACAGACGCAGGCTAAAATCTTGT
AAACAAGCTTTACATCAACAGTGTTGTTTAGCCTGTAACCAcaaatgtaa
aaaatgtgatAAGAAAGAATGTAAGGATGATTCTTGTCATCCAGgggcta
aatgtaatcaacacCCCTGTCGCAATTGTGACGAAACTAAGGAAATTTGT
CTCCATTCTTCAAGTATATGCTGCAAAAAATGTGAGACTTGTTTTTATTG
TGGCTCCAAAATGAAGTTAGAAGTTAGCGAACGGTGTAATAGACTACGGC
TAACATGTGGACTTGAAACATTGAGAAAATTTCGACAACTTTTagagaaa
ttgacttttaaaGATTGTGAATTGTTGCTAGATGGTAAACATACCTTACC
GGGTTTCCAGCTCTGTAGAAGTTTCCGAGAACTTTCTGATTATTTGTTGA
AAGCTTATAAAGAAGTTTTGAATTATATGTCGATCGCAGAACATTTTATC
AAACAACAACCTCTTTCTtctaaagatattcaaaagaaAGTTGACAGCCT
GGCTACAATTTTTAAAACGGAAGATCGTGATTGGCTGTTGTACATGCagc
atgatgacgtcattaagaTTTTAGGATTCATTAATGAAGCTAGAGCCCAA
CCCTCTGAAGAATATCATTACGTCATcaataaaattgaagaattgaaatc
agACGAGAAATTTAAGAGACACAGGAGTGAAGTTATGGTCGAACGTGAAA
ATGGGGACTCTACTGGCAGCTTATCAAGAGATGTGAATTTTAACTTGGAA
AGTGTAACcataaatgaaattgaaaattctaaaagtgaAATCGAGACAAA
CGAAAACGAAGTCTTCGAAACAGAGACTTTAAATGAACAGCTGATAAATA
ATGATTCACAACAACACGAGGAAGACGTAGCTGTTGCCAAGGTAACCGGA
GAACATGAAGGCGAGGCTACATCAACTGATGTTACCGATTCAACAACTTT
AAAACCtgaattaaaagaaaatgagggCACTGATGTCACCTCGGCAGATT
TCCGACCTGAAGAATCAGCAAGAAGCAAATGTGAATCTCCAGTCGATTAT
GAGTTGAACAAACAACCAGATTCTAAAACGTCTATTCATTCTAGAACCGA
CCCAGAAATGATTGAAGTCATCAACAACTTGCAACAATCAGTAGACGAGC
TGAAGGAAAGTTCAGTGACTTATCAAAAAGANTAACAACTTGCAACAATC
AGTTGACGAGCTGAAGGAAAGTTCAGTGACTTATCAAAAAGAACTGGATG
AAAAATTACAAACTTTTGAACTTGAACATATTGAAACATCATCTAACGTT
GAGGAAATGAACAATAAAGTGCTGAGTCAGCTTTCCGTTGTCATGGAGAA
GTTGGTTACCATGGAGGAGCAAAGAAAGGTCGAAGCGGAACGGCAACAAG
CGGAAATtgaagaaatcaagaaaaatcagaaaaagttgtTAGAGATGCTT
GAAAccaaacagaaagaaaaaggTATTTTATCTTCATGTTTCTAAATTTC
CTCACTTTTTAGATACTTAACTTGCATGATAAAGTATGCTAAAGACTTTT
CATCTATTGATGTCCTTCGCGTTGATCTTACATATGCTCACATACACTTT
TTGCAATGAACCCAGGGTACTGCGTTTCTCGACGTTTGCAAGGTAACAGG
TATGTCcgagtcaaaaatcaaaaatcaatacCATTTAACGGAGAGAAaga
tttgacatttttgagaccTTTTGAGGAGACTTGAAAAagggtacccttat
ggctctcACATCACATACCCCTAACCTGTACTCCCCTCCCCTGCAATTAA
CTTCTAAACACAACTTAAACCAAAACACTCAGATCCTTAGTTTTTGCGTG
TTATTGATAATTACTGTCATGACGAGTCTTTATCCATTCATTGTAcctaa
attttgactttcatTCGACATTCAATTCGAAATCCATACACTCATCATAT
ATTCACACCTTTATCCCAATTTTATTTATAGCTTCCAAGAAGAAACATAA
TATTTTCAAGCACAAGTAAGTATACACTTGAACCAATATTTTTCGTTCTA
GACCAAACAGCTTTTGCGTCCGGAAAATGATTTGTGGGCCTTCAAGGTTT
GAAACTTGAGCTTCTTCATGCCGCACTATTATTACAACCATTCACTTGAC
TAGATAAGATCATATCAAACTGAAGTTAAAAAATCAGTGGATAAGAAATT
CTATCCTCTTTGGCTTCAGGGCACTGACTAAGCACCCTCCACCCACAAAC
TCGATATTTTCTTGTGTATTGCATAAGTCATGATAAaacaatttctaaaa
aatcctatccttagaccatgttcagacgttacggttccgtatcgttccgt
atcgttccgaaacaaaacggttccgaaacaagtgtgaacgtcaaaattcg
aaacgtcagaAAAGAaaacgttacaaagcaaaacagattgaAAAGGTTTC
GCTTtgttcatcggaacggaactgctccgttttcttgctccgaaacgttc
cgaaaccaatatgaacataCACTCGATTCGTAAAATTATACCGGAGcgag
taacgtgtgaacatggtcttagcagagatttgggaaaagaggataagaaa
cgccgctgccgctcgctgttttcctattctttccctttgaattcggcacc
ctttgaagaagcaaggctgcagaatagttgagcaagaaggaaggccgaaa
caaaatggcgttacgtacaggttaaccaatgttcaagaaaaaagtccTTG
AATAAAGCTTTCCACTGAGTTCTTTGTGAAAAAGAGACTGGGGAGTGAAT
CTTTGATCTTCTGGGGGTTTCCCCTgagaaaatcgaggaaaatTATTCTA
TATTCTGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNACCTCGACATGTGATATTTATAAAGTCTGACTATTGA
TGGGCCATGATTTTGACCGGTCAGTGGATTGACTCACAAGGCTTGGACAA
TTTTGCAGCCAAGACATAATTTCATCGGTGAACTTTACAGTCTGTGTTAG
GGTAATTAATTCATGCAGATTATTGCTTATACGAAAACAAAAAAGCCCTA
GTTTTAcagtagattttcattttatatattttcagggCTAGTTATCGTCA
TTTTCTCTATGAAATACCTATTGTTTATAACAACGCTACCCAGAAAAACC
ATTCCACAGAAAGTTAAGTATGGGCTATTGGCCATCCAAGCACTGGTGCA
ATGAAGTAAAGATTGACTCAGGATGACtcaacatttttgcattttgaccG
TCACGTTAAGGCATGGAAAAGTCtgccaaaaaatgaaattaaacctGCAG
AACCTATATTACGTGCATTATTTAGCTTGACcaaaacagaatggaataat
aAATATATGCAGAGGATGTTAATATTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNTGGTCTTAGTTGAGGAATATACTAAACACTTTTCCTTTAAAC
TGCTCTGAGTAACTACAATTAGTATAGTTTTGTTAGTTTTTGGGGATGat
ccaaaaataaaatataaaatatagaaatatatAGCTCAAAGTGTCGTAAG
TTGTAACCACTGGCAaatgccaaaatatttcttcgaCTGACTATAACTTT
TCATGGTGTCATCTTCTTTTCTTCAGAGTCCACTAAAAGCAAGTTTACCA
AAATCAATATGCTATCATCGTGCAAATGAACAACTTCCCTGGTGAGAGGT
ATTATTATTAAGTGCAATGGCAAACACGGCGATCTTCAATCGGATTTATC
GCATTcaataaaaagtttaattttggttgtgaagaaaaattaatgaagtt
gaaaaaaaggatttttcctTTATCCGATACAGAACAATTTAAATCGTAGG
ATAGAGTTATTTTATCGATACActcttttttgtataaaaacgaTTATAGG
CAAGCGATTATGTTAACTGGAAATTCGGTCTACTGTTTTCGAGGATCAAT
ATGCCAAACGATAAGAACAGGTGAGACTCAACTAAAATTTTAgtcgttct
tataaagaaaagagTGTACTCATTTTTAGATTTGTAAAACTGAAattatt
ttaatctaatgaaagAATTTTGTGTTTATTTCTTagttatattttaattt
tattttagttaaaattttttagTTCTGAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013206XLOC_013206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023493-exon-sc0000455-1491911889:82587..82633TCONS_00023493-exon-sc0000455-1491911889:82587..82633Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1510915933:82587..82633TCONS_00023493-exon-sc0000455-1510915933:82587..82633Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1575043694:82587..82633TCONS_00023493-exon-sc0000455-1575043694:82587..82633Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1491911889:83611..85458TCONS_00023493-exon-sc0000455-1491911889:83611..85458Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1510915933:83611..85458TCONS_00023493-exon-sc0000455-1510915933:83611..85458Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1575043694:83611..85458TCONS_00023493-exon-sc0000455-1575043694:83611..85458Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1491911889:90763..91270TCONS_00023493-exon-sc0000455-1491911889:90763..91270Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1510915933:90763..91270TCONS_00023493-exon-sc0000455-1510915933:90763..91270Clytia hemisphaericaexon
TCONS_00023493-exon-sc0000455-1575043694:90763..91270TCONS_00023493-exon-sc0000455-1575043694:90763..91270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:82587..91270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.583791	0.376378	0.393531	0.385976	0.625166	0.851648	1.39666	0.975064	3.03699	2.36379	1.10747	1.08931	1.6751e-05	0.746813	0	7.43031e-05	0.301373	0	0.0161113	0	0	0.310693	1.67484	2.86539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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