|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023505 ID=TCONS_00023505|Name=TCONS_00023505|organism=Clytia hemisphaerica|type=transcript|length=1705bpRun BLAST on NCBI protein sequence of TCONS_00023505-protein >TCONS_00023505-protein ID=TCONS_00023505-protein|Name=TCONS_00023505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp MFGLQPVLLRASRTTCNCLAKSNHIKRKVVLRTLATPALKQNTDEENSISRun BLAST on NCBI transcript from alignment at sc0000455:175223..199573+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023505 ID=TCONS_00023505|Name=TCONS_00023505|organism=Clytia hemisphaerica|type=transcript|length=24351bp|location=Sequence derived from alignment at sc0000455:175223..199573+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000455:175223..199573+ >TCONS_00023505 ID=TCONS_00023505|Name=TCONS_00023505|organism=Clytia hemisphaerica|type=CDS|length=16758bp|location=Sequence derived from alignment at sc0000455:175223..199573+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023505 vs. Swiss-Prot (Human)
Match: RT29 (28S ribosomal protein S29, mitochondrial OS=Homo sapiens GN=DAP3 PE=1 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 7.528e-55 Identity = 118/352 (33.52%), Postives = 198/352 (56.25%), Query Frame = 3
Query: 228 SDPTKHTNDDYLKFYSIDKKIIQNNLSENVPKKFKELSKALSEHTLMLRKPALKIIQQLENTD---TSNKYVIYGPQGCGKSMSLLHVLHYAIQKDWVIVYIPNGFRLVDSQTATEVQPCQWRPGRFDQPKESLIWLNSFRQLNFNYLQNNSTTQEYKWGKREMTEQGRPLLELIDQGISRSLYANDAVGAILKELRINTST---NILFAVDSFNGLYERSSHKVDGKM-VDAQNLSLVHHFKKLMSPSYILGDRSSYVFALSQSGQYMGTKXXXXXXXXXXXXXXXXXXXGDFHHIRMENYNQREFEAIMKFYKSKNWLTRD--LSDSLLNEVHFLTGGNGTSVSKYAAFI 1256
+DP KH + + Y+I + ++ +P +F K SE LM+RKPAL+++ L+NT + +Y++YG +G GK++SL HV+H+ ++DW+I++IP+ V + ++ + RFDQP E+ WL +F+ N +L ++Y W KRE TE+G PL E+++QGI+R A DAVG +LKEL+ +S ++L AVD N L+ R++ K + K + + L+LVH+ +K+M + G + V ALSQ+G K LL E + L F I + NYN +EFE+ +++Y NWL + ++ E+ FL+ N + + ++ A++
Sbjct: 54 NDPAKHGDQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWV--KNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGG---AIVSALSQTGSLF--KPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL 398 The following BLAST results are available for this feature:
BLAST of TCONS_00023505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.