TCONS_00023606 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023606
Unique Name	TCONS_00023606
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1149

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000457:133649..141006+
coding sequence from alignment at sc0000457:133649..141006+

transcript sequence

>TCONS_00023606 ID=TCONS_00023606|Name=TCONS_00023606|organism=Clytia hemisphaerica|type=transcript|length=1149bp
GAAAATCATTTTCGAAAAGAATTCCTAGaaATTGGTGCTTGGAGAGGTTT
ACTTAATAAAGAACACCCTCAAGATGTCAGGCAAGGACAGAATCAATGTG
TTTCCATCTAGAATGGCAATGACAACAATGAAACAGAGGTTAAAAGGAGC
ACAAAAAGGACACAgtttattgaagaaaaaatctgATGCTTTGACAATGa
gattcagaaaaattttaaagactATCATTGATACAAAAGTTATGATGGGA
GACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAGCTTACTTTGCAGC
TGGCGATTTCagCTTGGTGATCACTGAAAATGTAGATAAAGCATGGACAA
AAGTGAGAACAAAAAATGACAATGTAGCCGGTGTAAAACTACCAGTATTT
GAAGCTTACACTGATGGGGCAAACACTTATGAGCTGACTGGATTGTCTCG
TGGAGGACAACAAGTGAACAACTGTGCCACCACATTCAACAAAGCACTGA
AATTGCTGGTGGAATTGGCTTCTCTTCAGACTGCTTTCGTAACATTGGAT
GAGGCAATCAAAATTACCAACAGAAGAGTCAATGCTATTGAACACGTCAT
TATCCCACGAATTGAGAGGACCATTGCATACATCACTAGTGAATTGGATG
AAATGGAAAGAGAAGAATTTTATCGgttgaaaaaaattcaagagaagaag
aagaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAACAATATCAATTAGA
TCATCAGCATGAAAAAGTTAAAGATACAGAACCAAAGAATATTTTAGCAG
ATAATGAGGACGATGAAGACCTCTTGTTCACATAATGAAATGATGGGCTT
TGATGAATCAAATatgttttaatttaaattttttatgacttaatttatga
atttttttcccttttATCATGCATTTATTAATTTAGAATGATCATACCAT
CCTTTGGGGTACCCatagattttagaatttttctttgCATTAAACTTTCC
TCCTTGATCTTTTCCTTTGATATAGTTATTATTTACTGTTGTGATGAATC
acttagaaaattaaaaaatattgaattgcaaactttttatattatataaa
ccgatataaaacttatttttaaactATGGAAAAGTAAAATACAAAACTA

Run BLAST on NCBI

protein sequence of TCONS_00023606-protein

>TCONS_00023606-protein ID=TCONS_00023606-protein|Name=TCONS_00023606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MSGKDRINVFPSRMAMTTMKQRLKGAQKGHSLLKKKSDALTMRFRKILKT
IIDTKVMMGDVMKEASFSLTEAYFAAGDFSLVITENVDKAWTKVRTKNDN
VAGVKLPVFEAYTDGANTYELTGLSRGGQQVNNCATTFNKALKLLVELAS
LQTAFVTLDEAIKITNRRVNAIEHVIIPRIERTIAYITSELDEMEREEFY
RLKKIQEKKKKNKAVKEEALKQYQLDHQHEKVKDTEPKNILADNEDDEDL
LFT

Run BLAST on NCBI

transcript from alignment at sc0000457:133649..141006+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023606 ID=TCONS_00023606|Name=TCONS_00023606|organism=Clytia hemisphaerica|type=transcript|length=7358bp|location=Sequence derived from alignment at sc0000457:133649..141006+ (Clytia hemisphaerica)
GAAAATCATTTTCGAAAAGAATTCCTAGGTAAAAACTTATTGGTCCTGAG
ATTACAAAGAATGCTAACCTGCAAATATGTTGTAGTTGTCCCGCGAAAAT
GACCTGCTCAAGAAAATCTCGGGATTCAAAATAAAACTCACAAGCtggtc
atttttttttttaattctagaaATTGGTGCTTGGAGAGGTTTACTTAATA
AAGAACACCCTCAAGATGTCAGGCAAGGACAGAATCAATGTGTTTCCATC
TAGAATGTAAGATTTTTCTCCTATTTTCTACTAAACTTGCATAACAAATA
TGAAAGCTTTTCTTTAGTAGAAGAATAAAGAAAATTCAACTCCTGANGTA
AGATTTTTCTCCTATTTTCTACTAAACTTGCATAACAAATATGAAAGCTT
TTCTTTCGTAAAAGAAAATTCAACTCCTGAATTCTCGAACaatttaccgt
caactgctctaaaacttgggacgattggtcaaatcTTGGGATGGTTGATT
TCTGGgctgtattttcacttaactGTTTAAATCTCTTTTGACAACAAGTT
TGATTTGGTACttcaaccaagtttatcaatcaaactttcactATCTCTCA
TAATCACAATTGTCAATTGGTAGGGGGgtcagtcgaaatttcaaaatcat
tttcaaaatgtcaaaccaagtttaatgaaaagcccatatcctcagaaaaa
aaatgaggggtcacttatCTTTCAACCTttagtcagttagtcacactagc
ctCCCGCcaaaaaatgcgtatcaaagattaatgctgcaaaagcgctacat
cgtttacttgactctcaagcaaaaaaaatgtggcgcaaaacttctaaaaa
tattcatgaaaaaataacccggcgcttttatcaataaaaaatttattcga
ataaaaaatcaaagcgctgtctcgggaattgaatgacaaattttggttgg
ttgattttggctgctgcacatttattttatttcaaactttcaagttttaa
ttaattgtcttgcgaacttgattcaggtaactctcatccttgttgtgcaa
atacatcctgtagatgactgatgttgttttttctgaaagctagatttcct
agtgtgactaactgttagtagtttttcagatattccattttgaagttcca
ttttttgaagattcctgttcaaaaaaacaaaaacctccTACCATCTCGTA
ACATGTCCACGgcactgaaatcgaaagtgtttcacaaaaaaatctACGCA
GGAAGTTTGGGGCGAGAGTGTTTTTCCGTAGTGCGAGCCATAGAGACGGG
GGTCACTATACCATTAAACTTCCCTTACAATGGAGCAAATATAGATACAC
AAAAGATAATTGCACAGCATGAAAGAGGAAAGTCTAAGCTCTCTGCTGTT
ACCTTTCGCAACATAAAAATTTGACGGATTCTTTGATTTACATTTGCTGG
AAGACAATGCACGACCCCACAGAACGAACGGTTTCAAAAGAAAGCTTGAT
CTACCATCTTTCAAACACAAAAAACCATTTGTTACGGGACCGATCTGCTC
CTTCGTGATCTTAATAAAAGTAACCATGGTTTTTCCAAATTTGCGGTGCT
GTAATCTTGTTCACAACAAATAGGGCAACCCAAGCTCTGAAAATCGAAGA
TTACAAATCAACGAAGAATGTTAAAGACTTCTGGTTTTTTGCACTGTAAA
GGTGAataaattcttttcattttggaaCAAAAAATCATGCAGATATCTTT
CTTTATCATTTAGATATTTAATTCTAAATTTTATTGTTATCCTTTTTTTG
TTGCCGTGTCTTTTGTCACGCGGGAAAATACGCGacttgggtaacttgca
tcagtggaggttaacatgcatagccctcaaatgaatgacctggctggtca
ttaaaatctCTAGAGACTTTCTTCCAGCGTGCACGTGCTTATTATTTGCT
ATCTATGATTCGTGCAGATTCGTGGTGTGTTAATTTTAAATGACCTTGGA
GGTTTGATAAATTGGTGGCcaaatggccgtcccatgttagagcagttgac
ggtaaattGTTCGAGACGAGAATTCAGGAATTGAATTTTGTTTAGACGGC
AATctcaaatatcttcattttgcgtCATGTACATTGataagtaatccctg
agagaagattttatagaaatctgcaacaaaaatgaaagtggtctcttcta
ctgattgcttcatagcgctccttcgcagctatttatcaaatttccaccaa
tgaggttgccgcatttcaaacggcccttctttttggcacccgtggccttt
cAGTGGCTTGCACAACgagcggctgtaaaatcccacccttcatatatttg
tttcaattcgtgatccgtggcttaggttttttctcatcttcaatttactg
aagaaagcgggaatttgatgtgagagttagattgtcaacaaagtgccatt
attGAACAAAAGAAGATTCATTAATTgaaataggggatttggaaaatttt
ctgtgattagttttttgcacaaacccctgtaactatggacGAGCACCCCG
Ttactaagatgttggcttgaaatcgaaaatgaaaccactcaaaacgaaag
taaaatcagcccgtactcgaaatcccgtaatcttgatatatgAGTTTAAG
TCTACACTGCCTGGGATATTTGATCTTCTCACATCTAAAACTTGCTCAAA
ATTTGCTATATTTTCTAgttttatgattaaaaagattAGTATTGCTGGTA
CTTCTAAGGCGAATGTGCTTAAACCTGGCCTAATGAAATCAGGTGTTACT
GGTTAGAATGGTGATGCCCCTCTCATCTTGAAAATCTTTGACTTTTTGCC
CAATATCTTACTCTATAATCTTCTCCTAAAGCCAATACGTAAAAAGTAAT
CACTATTTCCAGGCTGGGTTCTGGCCTACAAAATCGAGGAATGTAAAATT
GTCGATTAACGGTAGTTCTTAGTTAGTCAATATAAAATTGTCCTAGATAG
ACAAAATACCGTCTCCCTTGCAGAAAAACAGAGATATATAAACTTTCTAT
TATTGTAGTCTAGCCaggagaaaaattacaaaaaataaggGGAAAcaaga
aatgttgaaatttaattgttttcttggttttcttctttttattgatttca
CTTTATTAATGTCATTATAGGGCAATGACAACAATGAAACAGAGGTTAAA
AGGAGCACAAAAAGGACACAgtttattgaagaaaaaatctgATGCTTTGA
CAATGagattcagaaaaattttaaagactATCATTGATGTAAGTATCTTA
CCCTATTTACAATACAATGTCCTTTTTGATTTTAGATAATAATAAATTGG
CTGCAAATAAAACTAACAAGATTTATTTGTCGTattttgtaaattctggt
tTGGCAATACTTCAAACATTCCCTGAACTGTTTGATTTTCTGTGGAAAAA
GATGAAATATGTAtgttgaaaaaatatgttttgccTTTTTCATAAGTTGC
CTTAGTTCTTTTCTTTTTAGACAGAAGgaataaaaacgtaaaaaacccTG
GGATTCCACTCTAGCTCTGCTTTTAAACATCAACTCTgctaaaaattgtt
ttaaaaaacaaCATCCCAAGCCAATGATGTAGTAATAATTTTGTATTATA
AACTTGTTTCTATCATATTTGATTTATTTAACCCCTCTACTTAGACAAAA
GTTATGATGGGAGACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAGC
TTACTTTGCAGCTGGCGATTTCaggtttgattttattttaaacCTTTTCC
TAATATTTCATCATAGACTTGGTGAGAACATAACACTTCCCAAAGATTGA
TTATTGAGTTATTTGAGTTAACTTTAATATTGAGTTATTcaagttaactt
ttattttagtaagtagaAAACAATGTCACAAATGAATTACCATGCAAAAG
AATATGAAGAATAACCATGTAGTTAGTATTTGAATTCCTGTTTTTGACAC
CttctttttaaattctcaaGATAAAACGTTATGAGAATATGCAAATTTCC
CTACAACCTTTTAGCTTGGTTATCACTGAAAATGTAGATANAGAATATGC
AAATTTCCCTACAACCTTTTAGCTTGGTGATCACTGAAAATGTAGATAAA
GCATGGACAAAAGTGAGAACAAAAAATGACAATGTAGCCGGTAAAATTTA
ATTATGTGTTTTGtggtcttttgatttctttcatgatgtgtttttttaat
atttagccTTACTGTACATTCGGTTTGAAAAAAGGGATGGAAAAGCAATA
AAAACGgatgatttgaattttttattattcAGGTGTAAAACTACCAGTAT
TTGAAGCTTACACTGATGGGGCAAACAGTGAGTACTTTGTCTAATCTAAC
TAATTCACCTATCAACCCTGAATGTATGAGGGGACTAGTTTAGTGTTTAC
CTGATAGATCGATGTTAAAATTTTGTGTTATTGGAAAATCAATGCAACAA
ATTTAGACATCAGTTATCAATACTTCTAGGTGTACTCCAACCCAGACACC
TCATGTTTTAAGGGTTAAAAGTGATAAAGTAAAATCAagtgtatttaaaa
aattctagaTAGATTGTCATAAATTTGTTTCAGGTAATTATACTCATGAC
TTTGATTGTTTAATTCACCTGTTTGGGTTGATCAATAGTTTAATTAATAG
CTGTATCTCATATTTTCTAAGCTTATGAGCTGACTGGATTGTCTCGTGGA
GGACAACAAGTGAACAACTGTGCCACCACATTCAACAAAGCACTGAAATT
GCTGGTGGAATTGGCTTCTCTTCAGGTTACCATACATAATTCAatcttta
tgattttgtcatcaAATGCAGctttataatttgaaatataactCGAACTG
AAACACTTATTCCCTAAGCTTGAAAACTGTATAAAAGAGGTTTGCCATAA
TcagaatctttctttaattgtTGAAGGAATTTCTTGGtcctttgaagatc
gaattagagaagtCAACTAAAATACAATTTCATTTAGACTGCTTTCGTAA
CATTGGATGAGGCAATCAAAATTACCAACAGAAGAGTCAATGCTATTGAA
CACGGTAATTGCTGTATCAAATTTGCATctatttaaaaatacatttaatt
agaagagaaaattttgattttagttttttgtatATTCATGATTCCTTATA
AACTTTTTTGTAGTCATTATCCCACGAATTGAGAGGACCATTGCATACAT
CACTAGTGAATTGGATGAAATGGAAAGAGAAGAATTTTATCGGTAAAAAT
TGTGTCCCCTAATTGAATCAGCTAAAATCTGTGGATCTTCATATTTTGAG
TATTCAAAATGTCTTTGAGGCTGCTATTTTAATAgttttgtattattttt
atcAGTAATGACCAGAATGGCCAACCTCTTGGCAGTGAAACAGACCACCT
CTTTTAACTTTGGCTGTCATTCTTTATCTACTGCTATGCATCTATTAAAG
AGATAAGCAGTTAATTACAATTAACTAAGTATAAAGTAGAAGCTGTTTTT
TTAAGGGTATCAATGCCTACTCAGATTGGTATGTAtaatcttttgattaa
aattgtTGAATTGCTTACTTTCCCATTTATTTACAtaggttgaaaaaaat
tcaagagaagaagaagaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAAC
AATATCAATTAGATCATCAGCATGAAAAAGTTAAAGGTGAGATATACAAT
GTCAACACATGGCCTAATCCGAAGGTCAAGAAGATTAATTTAAACAGATT
TTACATGAATGATAGTTAATGCTAAAACTAAAAGAAGTTAATGCTTCCAA
ACCAAGAATTATATACATTTAATAAATCCCTAATTATTGCTTTTAAATAA
GCGAGTATTTTCTATGGGACACTCTGCAGAGGTTAATGACACTTTACTTA
GATCATGACTATAGAGCTTGTTACAGCCTGACAATATTTTGTGCATTCGA
ATCACTTCAAAGTGTTCACTTTTCCTGTTCATGTTTATTTGCTATTTCCT
TATCATCACTTATCATGAGTATTCTCGAAAAGGCTCAAATACTTGATCTT
GTCTCTCTTGCCAGAAGTTTAACTTAGAAAATAAAGTGGAatcttttttg
ttgaaaattttctgatttcacTTTCAGGTTTCAGAAGTCAAGCTTCAACA
TATTTCTTACTATATTTCTTTCAGATACAGAACCAAAGAATATTTTAGCA
GATAATGAGGACGATGAAGACCTCTTGTTCACATAATGAAATGATGGGCT
TTGATGAATCAAATatgttttaatttaaattttttatgacttaatttatg
aatttttttcccttttATCATGCATTTATTAATTTAGAATGATCNAtatt
tcaactgggacctgaaccttactgaaaagtggggggacctaaatcgtagg
ggggacctaaatttgttggggggacctagaaccccattcggagccatgTG
AGATATACAATGTCAACACATGGCCTAATCCGAAGGTCAAGAAGATTAAT
TTAAACAGATTTTACATGAATGATAGTTAATGCTAAAAGAAGTTAATGCT
TCCAAACCAAGAATTATATACATTTAATAAATCCCTAATTATTGCTTTTA
AATAAGCGAGTATTTTCTATGGGACACTCTGCAGAGGTTAATGACACTTT
ACTTAGATCATGACTATAGAGCTTGTTAGAGCCTGACAATATTGTGTGCG
TTCGAATCACTTCAAAGTGTTCACTTTTCCTGTTCATGTTTATTTGCTAT
TTCCTTATGATCACTTATCATGAGTATTCTCGAAAAGGTTCAAATACTTG
ATCTTGTCTCTCATATTTGCCAGAAGTTTAACTTAGAAAATAAAGTGGAa
tcttttttgttgaaaattttctgatttcacTTTCAGGTTTCAGAAGTCAA
GCTTCAACATATTTCTACTATATTTCTTTCAGATACAGAACCAAAGAATA
TTTTAGCAGATAATGAGGACGATGAAGACCTCTTGTTCACATAATGAAAT
GATGGGCTTTGATGAATCAAATatgttttaatttaaattttttatgactt
aatttatgaatttttttcccttttATCATGCATTTATTAATTTAGAATGA
TCATACCATCCTTTGGGGTACCCatagattttagaatttttctttgCATT
AAACTTTCCTCCTTGATCTTTTCCTTTGATATAGTTATTATTTACTGTTG
TGATGAATCacttagaaaattaaaaaatattgaattgcaaactttttata
ttatataaaccgatataaaacttatttttaaactATGGAAAAGTAAAATA
CAAAACTA

Coding sequence (CDS) from alignment at sc0000457:133649..141006+

>TCONS_00023606 ID=TCONS_00023606|Name=TCONS_00023606|organism=Clytia hemisphaerica|type=CDS|length=7620bp|location=Sequence derived from alignment at sc0000457:133649..141006+ (Clytia hemisphaerica)
ATGTCAGGCAAGGACAGAATCAATGTGTTTCCATCTAGAATGGCAATGAC
AACAATGAAACAGAGGTTAAAAGGAGCACAAAAAGGACACAgtttattga
agaaaaaatctgATGCTTTGACAATGagattcagaaaaattttaaagact
ATCATTGATACAAAAGTTATGATGGGAGACGTGATGAAAGAAGCGTCATT
TTCTTTGACAGAAGCTTACTTTGCAGCTGGCGATTTCagCTTGGTGATCA
CTGAAAATGTAGATAAAGCATGGACAAAAGTGAGAACAAAAAATGACAAT
GTAGCCGGTGTAAAACTACCAGTATTTGAAGCTTACACTGATGGGGCAAA
CACTTATGAGCTGACTGGATTGTCTCGTGGAGGACAACAAGTGAACAACT
GTGCCACCACATTCAACAAAGCACTGAAATTGCTGGTGGAATTGGCTTCT
CTTCAGACTGCTTTCGTAACATTGGATGAGGCAATCAAAATTACCAACAG
AAGAGTCAATGCTATTGAACACGTCATTATCCCACGAATTGAGAGGACCA
TTGCATACATCACTAGTGAATTGGATGAAATGGAAAGAGAAGAATTTTAT
CGgttgaaaaaaattcaagagaagaagaagaaaaacaaagcaGTGAAAGA
GGAAGCCTTGAAACAATATCAATTAGATCATCAGCATGAAAAAGTTAAAG
ATACAGAACCAAAGAATATTTTAGCAGATAATGAGGACGATGAAGACCTC
TTGTTCACATAAATGTCAGGCAAGGACAGAATCAATGTGTTTCCATCTAG
AATGGCAATGACAACAATGAAACAGAGGTTAAAAGGAGCACAAAAAGGAC
ACAgtttattgaagaaaaaatctgATGCTTTGACAATGagattcagaaaa
attttaaagactATCATTGATACAAAAGTTATGATGGGAGACGTGATGAA
AGAAGCGTCATTTTCTTTGACAGAAGCTTACTTTGCAGCTGGCGATTTCa
gCTTGGTGATCACTGAAAATGTAGATAAAGCATGGACAAAAGTGAGAACA
AAAAATGACAATGTAGCCGGTGTAAAACTACCAGTATTTGAAGCTTACAC
TGATGGGGCAAACACTTATGAGCTGACTGGATTGTCTCGTGGAGGACAAC
AAGTGAACAACTGTGCCACCACATTCAACAAAGCACTGAAATTGCTGGTG
GAATTGGCTTCTCTTCAGACTGCTTTCGTAACATTGGATGAGGCAATCAA
AATTACCAACAGAAGAGTCAATGCTATTGAACACGTCATTATCCCACGAA
TTGAGAGGACCATTGCATACATCACTAGTGAATTGGATGAAATGGAAAGA
GAAGAATTTTATCGgttgaaaaaaattcaagagaagaagaagaaaaacaa
agcaGTGAAAGAGGAAGCCTTGAAACAATATCAATTAGATCATCAGCATG
AAAAAGTTAAAGATACAGAACCAAAGAATATTTTAGCAGATAATGAGGAC
GATGAAGACCTCTTGTTCACATAAATGTCAGGCAAGGACAGAATCAATGT
GTTTCCATCTAGAATGGCAATGACAACAATGAAACAGAGGTTAAAAGGAG
CACAAAAAGGACACAgtttattgaagaaaaaatctgATGCTTTGACAATG
agattcagaaaaattttaaagactATCATTGATACAAAAGTTATGATGGG
AGACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAGCTTACTTTGCAG
CTGGCGATTTCagCTTGGTGATCACTGAAAATGTAGATAAAGCATGGACA
AAAGTGAGAACAAAAAATGACAATGTAGCCGGTGTAAAACTACCAGTATT
TGAAGCTTACACTGATGGGGCAAACACTTATGAGCTGACTGGATTGTCTC
GTGGAGGACAACAAGTGAACAACTGTGCCACCACATTCAACAAAGCACTG
AAATTGCTGGTGGAATTGGCTTCTCTTCAGACTGCTTTCGTAACATTGGA
TGAGGCAATCAAAATTACCAACAGAAGAGTCAATGCTATTGAACACGTCA
TTATCCCACGAATTGAGAGGACCATTGCATACATCACTAGTGAATTGGAT
GAAATGGAAAGAGAAGAATTTTATCGgttgaaaaaaattcaagagaagaa
gaagaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAACAATATCAATTAG
ATCATCAGCATGAAAAAGTTAAAGATACAGAACCAAAGAATATTTTAGCA
GATAATGAGGACGATGAAGACCTCTTGTTCACATAAATGTCAGGCAAGGA
CAGAATCAATGTGTTTCCATCTAGAATGGCAATGACAACAATGAAACAGA
GGTTAAAAGGAGCACAAAAAGGACACAgtttattgaagaaaaaatctgAT
GCTTTGACAATGagattcagaaaaattttaaagactATCATTGATACAAA
AGTTATGATGGGAGACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAG
CTTACTTTGCAGCTGGCGATTTCagCTTGGTGATCACTGAAAATGTAGAT
AAAGCATGGACAAAAGTGAGAACAAAAAATGACAATGTAGCCGGTGTAAA
ACTACCAGTATTTGAAGCTTACACTGATGGGGCAAACACTTATGAGCTGA
CTGGATTGTCTCGTGGAGGACAACAAGTGAACAACTGTGCCACCACATTC
AACAAAGCACTGAAATTGCTGGTGGAATTGGCTTCTCTTCAGACTGCTTT
CGTAACATTGGATGAGGCAATCAAAATTACCAACAGAAGAGTCAATGCTA
TTGAACACGTCATTATCCCACGAATTGAGAGGACCATTGCATACATCACT
AGTGAATTGGATGAAATGGAAAGAGAAGAATTTTATCGgttgaaaaaaat
tcaagagaagaagaagaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAAC
AATATCAATTAGATCATCAGCATGAAAAAGTTAAAGATACAGAACCAAAG
AATATTTTAGCAGATAATGAGGACGATGAAGACCTCTTGTTCACATAAAT
GTCAGGCAAGGACAGAATCAATGTGTTTCCATCTAGAATGGCAATGACAA
CAATGAAACAGAGGTTAAAAGGAGCACAAAAAGGACACAgtttattgaag
aaaaaatctgATGCTTTGACAATGagattcagaaaaattttaaagactAT
CATTGATACAAAAGTTATGATGGGAGACGTGATGAAAGAAGCGTCATTTT
CTTTGACAGAAGCTTACTTTGCAGCTGGCGATTTCagCTTGGTGATCACT
GAAAATGTAGATAAAGCATGGACAAAAGTGAGAACAAAAAATGACAATGT
AGCCGGTGTAAAACTACCAGTATTTGAAGCTTACACTGATGGGGCAAACA
CTTATGAGCTGACTGGATTGTCTCGTGGAGGACAACAAGTGAACAACTGT
GCCACCACATTCAACAAAGCACTGAAATTGCTGGTGGAATTGGCTTCTCT
TCAGACTGCTTTCGTAACATTGGATGAGGCAATCAAAATTACCAACAGAA
GAGTCAATGCTATTGAACACGTCATTATCCCACGAATTGAGAGGACCATT
GCATACATCACTAGTGAATTGGATGAAATGGAAAGAGAAGAATTTTATCG
gttgaaaaaaattcaagagaagaagaagaaaaacaaagcaGTGAAAGAGG
AAGCCTTGAAACAATATCAATTAGATCATCAGCATGAAAAAGTTAAAGAT
ACAGAACCAAAGAATATTTTAGCAGATAATGAGGACGATGAAGACCTCTT
GTTCACATAAATGTCAGGCAAGGACAGAATCAATGTGTTTCCATCTAGAA
TGGCAATGACAACAATGAAACAGAGGTTAAAAGGAGCACAAAAAGGACAC
AgtttattgaagaaaaaatctgATGCTTTGACAATGagattcagaaaaat
tttaaagactATCATTGATACAAAAGTTATGATGGGAGACGTGATGAAAG
AAGCGTCATTTTCTTTGACAGAAGCTTACTTTGCAGCTGGCGATTTCagC
TTGGTGATCACTGAAAATGTAGATAAAGCATGGACAAAAGTGAGAACAAA
AAATGACAATGTAGCCGGTGTAAAACTACCAGTATTTGAAGCTTACACTG
ATGGGGCAAACACTTATGAGCTGACTGGATTGTCTCGTGGAGGACAACAA
GTGAACAACTGTGCCACCACATTCAACAAAGCACTGAAATTGCTGGTGGA
ATTGGCTTCTCTTCAGACTGCTTTCGTAACATTGGATGAGGCAATCAAAA
TTACCAACAGAAGAGTCAATGCTATTGAACACGTCATTATCCCACGAATT
GAGAGGACCATTGCATACATCACTAGTGAATTGGATGAAATGGAAAGAGA
AGAATTTTATCGgttgaaaaaaattcaagagaagaagaagaaaaacaaag
caGTGAAAGAGGAAGCCTTGAAACAATATCAATTAGATCATCAGCATGAA
AAAGTTAAAGATACAGAACCAAAGAATATTTTAGCAGATAATGAGGACGA
TGAAGACCTCTTGTTCACATAAATGTCAGGCAAGGACAGAATCAATGTGT
TTCCATCTAGAATGGCAATGACAACAATGAAACAGAGGTTAAAAGGAGCA
CAAAAAGGACACAgtttattgaagaaaaaatctgATGCTTTGACAATGag
attcagaaaaattttaaagactATCATTGATACAAAAGTTATGATGGGAG
ACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAGCTTACTTTGCAGCT
GGCGATTTCagCTTGGTGATCACTGAAAATGTAGATAAAGCATGGACAAA
AGTGAGAACAAAAAATGACAATGTAGCCGGTGTAAAACTACCAGTATTTG
AAGCTTACACTGATGGGGCAAACACTTATGAGCTGACTGGATTGTCTCGT
GGAGGACAACAAGTGAACAACTGTGCCACCACATTCAACAAAGCACTGAA
ATTGCTGGTGGAATTGGCTTCTCTTCAGACTGCTTTCGTAACATTGGATG
AGGCAATCAAAATTACCAACAGAAGAGTCAATGCTATTGAACACGTCATT
ATCCCACGAATTGAGAGGACCATTGCATACATCACTAGTGAATTGGATGA
AATGGAAAGAGAAGAATTTTATCGgttgaaaaaaattcaagagaagaaga
agaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAACAATATCAATTAGAT
CATCAGCATGAAAAAGTTAAAGATACAGAACCAAAGAATATTTTAGCAGA
TAATGAGGACGATGAAGACCTCTTGTTCACATAAATGTCAGGCAAGGACA
GAATCAATGTGTTTCCATCTAGAATGGCAATGACAACAATGAAACAGAGG
TTAAAAGGAGCACAAAAAGGACACAgtttattgaagaaaaaatctgATGC
TTTGACAATGagattcagaaaaattttaaagactATCATTGATACAAAAG
TTATGATGGGAGACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAGCT
TACTTTGCAGCTGGCGATTTCagCTTGGTGATCACTGAAAATGTAGATAA
AGCATGGACAAAAGTGAGAACAAAAAATGACAATGTAGCCGGTGTAAAAC
TACCAGTATTTGAAGCTTACACTGATGGGGCAAACACTTATGAGCTGACT
GGATTGTCTCGTGGAGGACAACAAGTGAACAACTGTGCCACCACATTCAA
CAAAGCACTGAAATTGCTGGTGGAATTGGCTTCTCTTCAGACTGCTTTCG
TAACATTGGATGAGGCAATCAAAATTACCAACAGAAGAGTCAATGCTATT
GAACACGTCATTATCCCACGAATTGAGAGGACCATTGCATACATCACTAG
TGAATTGGATGAAATGGAAAGAGAAGAATTTTATCGgttgaaaaaaattc
aagagaagaagaagaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAACAA
TATCAATTAGATCATCAGCATGAAAAAGTTAAAGATACAGAACCAAAGAA
TATTTTAGCAGATAATGAGGACGATGAAGACCTCTTGTTCACATAAATGT
CAGGCAAGGACAGAATCAATGTGTTTCCATCTAGAATGGCAATGACAACA
ATGAAACAGAGGTTAAAAGGAGCACAAAAAGGACACAgtttattgaagaa
aaaatctgATGCTTTGACAATGagattcagaaaaattttaaagactATCA
TTGATACAAAAGTTATGATGGGAGACGTGATGAAAGAAGCGTCATTTTCT
TTGACAGAAGCTTACTTTGCAGCTGGCGATTTCagCTTGGTGATCACTGA
AAATGTAGATAAAGCATGGACAAAAGTGAGAACAAAAAATGACAATGTAG
CCGGTGTAAAACTACCAGTATTTGAAGCTTACACTGATGGGGCAAACACT
TATGAGCTGACTGGATTGTCTCGTGGAGGACAACAAGTGAACAACTGTGC
CACCACATTCAACAAAGCACTGAAATTGCTGGTGGAATTGGCTTCTCTTC
AGACTGCTTTCGTAACATTGGATGAGGCAATCAAAATTACCAACAGAAGA
GTCAATGCTATTGAACACGTCATTATCCCACGAATTGAGAGGACCATTGC
ATACATCACTAGTGAATTGGATGAAATGGAAAGAGAAGAATTTTATCGgt
tgaaaaaaattcaagagaagaagaagaaaaacaaagcaGTGAAAGAGGAA
GCCTTGAAACAATATCAATTAGATCATCAGCATGAAAAAGTTAAAGATAC
AGAACCAAAGAATATTTTAGCAGATAATGAGGACGATGAAGACCTCTTGT
TCACATAAATGTCAGGCAAGGACAGAATCAATGTGTTTCCATCTAGAATG
GCAATGACAACAATGAAACAGAGGTTAAAAGGAGCACAAAAAGGACACAg
tttattgaagaaaaaatctgATGCTTTGACAATGagattcagaaaaattt
taaagactATCATTGATACAAAAGTTATGATGGGAGACGTGATGAAAGAA
GCGTCATTTTCTTTGACAGAAGCTTACTTTGCAGCTGGCGATTTCagCTT
GGTGATCACTGAAAATGTAGATAAAGCATGGACAAAAGTGAGAACAAAAA
ATGACAATGTAGCCGGTGTAAAACTACCAGTATTTGAAGCTTACACTGAT
GGGGCAAACACTTATGAGCTGACTGGATTGTCTCGTGGAGGACAACAAGT
GAACAACTGTGCCACCACATTCAACAAAGCACTGAAATTGCTGGTGGAAT
TGGCTTCTCTTCAGACTGCTTTCGTAACATTGGATGAGGCAATCAAAATT
ACCAACAGAAGAGTCAATGCTATTGAACACGTCATTATCCCACGAATTGA
GAGGACCATTGCATACATCACTAGTGAATTGGATGAAATGGAAAGAGAAG
AATTTTATCGgttgaaaaaaattcaagagaagaagaagaaaaacaaagca
GTGAAAGAGGAAGCCTTGAAACAATATCAATTAGATCATCAGCATGAAAA
AGTTAAAGATACAGAACCAAAGAATATTTTAGCAGATAATGAGGACGATG
AAGACCTCTTGTTCACATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013271	XLOC_013271	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023606-protein	TCONS_00023606-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000457	supercontig	sc0000457:133649..141006 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
112.936	112.178	69.9117	66.6141	47.0174	28.2606	64.8464	61.0315	46.6629	38.1176	47.0423	30.8393	24.4066	22.7774	37.2045	39.2591	43.5539	35.1551	20.2184	26.3072	59.0746	52.9613	86.9273	76.8686	13.1114	20.1108	80.584	66.7339	125.637	109.457

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002699	V_ATPase_D
IPR011990	TPR-like_helical_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0042626	ATPase activity, coupled to transmembrane movement of substances
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00023606 vs. Swiss-Prot (Human)
Match: VATD (V-type proton ATPase subunit D OS=Homo sapiens GN=ATP6V1D PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 2.011e-106
Identity = 162/252 (64.29%), Postives = 196/252 (77.78%), Query Frame = 2

Query:   74 MSGKDRINVFPSRMAMTTMKQRLKGAQKGHSLLKKKSDALTMRFRKILKTIIDTKVMMGDVMKEASFSLTEAYFAAGDFSLVITENVDKAWTKVRTKNDNVAGVKLPVFEAYTDGANTYELTGLSRGGQQVNNCATTFNKALKLLVELASLQTAFVTLDEAIKITNRRVNAIEHVIIPRIERTIAYITSELDEMEREEFYRLXXXXXXXXXXXXXXXXXXXQYQLDHQHEKVKDTEPKNILADNEDDEDLLF 829
            MSGKDRI +FPSRMA T MK RLKGAQ G +LLKKKSDALT+RFR+ILK II+TK++MG+VM+EA+FSL EA F AGDFS  + +NV+KA  K+R K DNVAGV LPVFE Y +G ++YELTGL+RGG+Q+      + KA++LLVELASLQT+FVTLDEAIKITNRRVNAIEHVIIPRIERT+AYI +ELDE EREEFYRL     KK + K    +   +  L+ +    +  EP N+LA+ E DEDLLF
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRL-----KKIQEKKKILKEKSEKDLEQRRAAGEVLEPANLLAE-EKDEDLLF 246

The following BLAST results are available for this feature:

BLAST of TCONS_00023606 vs. Swiss-Prot (Human)

BLAST of TCONS_00023606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VATD	2.011e-106	64.29	V-type proton ATPase subunit D OS=Homo sapiens GN=...	[more]

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TCONS_00023606 (transcript) - C. hemisphaerica