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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023825 ID=TCONS_00023825|Name=TCONS_00023825|organism=Clytia hemisphaerica|type=transcript|length=1202bp
gaaaacaaataagTGGCCTCACGATTTAACACTAATTTGTTGAAGAACTC
CTTCAAAATCAACGTGTGTCAAAATATAGAAAACATAGAAATTGAAGATT
ATAGTGTGACCATTCCATACATTCAATTTATTGAGTTTTAGGGAGGGGGG
TGTAAACGGACTATGCAAAGTaatataaaactttcaaaatcggaTCTATA
GAGATAGATTTGATACAGTCAACAGAGTTTATCAAAATGAAGGTGCTAAC
TTTTTTCATTGCAGTACTTTTGGTGGTATTTGTTTCAACCGAGGACCAAG
GTGCCAAGGATTATTTGACGCAATTTGGATTCCACGACAAACATCATTTC
AGTGATGCAGATCTTACAGAATCAGTACGCCATTTCCAAATTACTTTCGG
CTTAAACCCTTCCGGAAAAGTAGACAAAGACACACAAGCATTAATGAACA
CCCCAAGATGTGGACGACCAGATAACGAATATTATGGAGATTTGAACTAT
AATGCTTATTACCAACCGAAATGGAACAAAAAGGAATTGACCTATTATTT
TGATAGCTATACAAATGATATTGATAGAGATGATCTGATTCGAGAAACAG
CAAAGGCATTCAAATATTGGTCAGATGTCAGTTCATTGAGCTTTAGAAGA
GTTGACCGAAATGGTGATATTGTTATCGCATTTGGTGCAAAATCACACCG
TGATGATCGAAGAGGAACTTGTCGAACATCATTTGATGGAAAAGGAAAAG
TTCTCGCGCATGCGTTTTATCCAAAAGATGGTCGTCTACattttgatgat
gatgaaaattttgctatcaCTAAATGGAAATTCTGGGCAACAAGTTACCA
ATGGGTTGCTGTTCATGAAATTGGGCATATTCTAGGTTTATCACACGACA
CACAAGATAAGAGCGCTATTATGTATCCTTACTATCGTGGTCTTTTTTCT
AAATTGAAGCTTGGTTCAAGTGATATCAGAAGAATTCAAAATTTGTATGG
AAGATAATTCTTGTCACtgaaatatacattttaaatACAAAGAACTATTA
TACTTTTAACTTACTTGTTATGTCCTGCTTTAACTATTCCatttaaaaat
atacaaaagatGACATAGCCAAActaatctccgagcagattctcTAAAAG
TCATGGCTTCTGCCCTAGAATTgagaatctgcccaggttgGCGCACCGCT
TT Run BLAST on NCBI transcript from alignment at sc0000462:176760..180184- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023825 ID=TCONS_00023825|Name=TCONS_00023825|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at sc0000462:176760..180184- (Clytia hemisphaerica)
GAAAACAAATAAGTGGCCTCACGATTTAACACTAATTTGTTGAAGAACTC
CTTCAAAATCAACGTGTGTCAAAATATAGAAAACATAGAAATTGAAGATT
ATAGTGTGACCATTCCATACATTCAATTTATTGAGTTTTAGGGAGGGGGG
TGTAAACGGACTATGCAAAGTAATATAAAACTTTCAAAATCGGATCTATA
GAGATAGATTTGATACAGTCAACAGAGTTTATCAAAATGAAGGTGCTAAC
TTTTTTCATTGCAGTACTTTTGGTGGTATTTGTTTCAACCGAGGACCAAG
GTGCCAAGGTTAGTTCAAACCATGCAGTTATAATTTCTTTTGTTGTTAGG
CTACCCAGGGCCCTATGTCAGTTCGGTAAGTCGCACCTAGTTTACTAGGA
AAATAAAATCTAAGGATGAAAAGTTTACTTTTGAGCTGTTCTGCAAAATA
CACGTGATTTTGAGACCCCGTTCATCACTCTGCAACCGTTTTCTTGGTTC
AAAGGAAAGTGTTGTCAAATTTAGCAACGGAAAAGCGGCGAGATTTGACA
ACGTTACAGAATTTGACAACGTTGCAGAATTTGACAACGTTGCAGAATTT
CACAACGTTGCGGAATTTGGCAACGCTTAAGCTACAGTACTTCACAGCGC
TTCGATTCTTTGTAGTTTCTGCTCGAACTGATAGATGTAAAAGGTTTTGA
GTGTAAAATGTTGAGCGATTTTATTACATGTAGAAAAACATTCTTCTCAA
ATTTTACGATGTTTACTGTCATAATAATACACCCCTATCTCACAGCCCCG
GTAGAAGATTTTCCCTCAGTGGCGATGAAAACTTATATTGAAATCTCAGT
GGGAATAGAATAGAAAATTCCATTGTTCCTAGCACAAAAATTCGAGTGGG
GATGGTTTTGGAGTGCAATTTTTTCCATTAAATTTTAAGTGAGGATTAAA
TCGATTTCCAACTGATGCTGAAATTGTAGGATATTTTTTCAACTGAGGAC
GGAATTTTTGGCAAATTTTCCAGTTGGGCTGGGTCCCAGCGAGTCTGTGA
CACAGGGGTGTAATAATGCAACTGTATGCCCGAAGAATAGAGTAGAGAGC
GATTTCTATATTCATGTAAAATGTTTATGCTGATTTTATTTTTCGTAAAG
GATTATTTGACGCAATTTGGATTCCACGACAAACATCATTTCAGTGATGC
AGATCTTACAGAATCAGTACGCCATTTCCAAATTACTTTCGGCTTAAACC
CTTCCGGAAAAGTAGACAAAGACACACAAGCATTAATGAACACCCCAAGA
TGTGGACGACCAGATAACGAATATTATGGAGATTTGAACTATAATGCTTA
TTACCAACCGAAATGGAACAAAAAGGAATTGACCTATTATTTTGATAGCT
ATACAAATGATATTGATAGAGATGATCTGATTCGAGAAACAGCAAAGGCA
TTCAAATATTGGTCAGATGTCAGTTCATTGAGCTTTAGAAGAGTTGACCG
AAATGGTGATATTGTTATCGCGTAAGTTATATGATTTTCTGATCCTGGGT
TCAAAAGAAAAGTTAAAGGTTTTGTTTTTAAACAAGAGTGATATCGTTTG
CTTACTCATCAATTTTAAAATACAACATACAAGCTTTTTGATATTGAATT
GACACGGATGTGGAGTGGAGCAAGGTTGATCAGAAAGAGGAAAAGAAACG
GACTGTAATGGTCCATTTTCAAAGTCCTATTTTGGGCCGCACATACGGTC
GTTTTTTGAATCGAGTGACCATGAGTAAATTCTAGTATTCAGAGGGTCGA
TTATATGATTTCCCGGCTTGAATCACACATCCAGGGGATGAAAAATCGAA
ATGACCAGTGATATGATAAGTCGACTTCTTTTCTGGAAGAGCCCAGATTT
TAGAAAAAAGATTTTGGTATTTAGATTTGGTGCAAAATCACACCGTGATG
ATCGAAGAGGAACTTGTCGAACATCATTTGATGGAAAAGGAAAAGTTCTC
GCGCATGCGTTTTATCCAAAAGATGGTCGTCTACATTTTGATGATGATGA
AAATTTTGCTATCACTAAATGGAAATTCTGTAAGATTTAAGTTTTTTCTC
TCTCATAAAGCCTTTCGGGGTAGTGGGAGGGGTAATAGGGTTTTCCTTGA
AGGAGAATAGTAATTAGTTCGAATCATAGAAAGATTTGAATTATGGAAGT
TCGAATTAACAAGAGTCAACTGTATATATTATTTTTTACCTTTTCTAGGG
GCAACAAGTTACCAATGGGTTGCTGTTCATGAAATTGGGCATATTCTAGG
TTTATCACACGACACACAAGATAAGAGCGCTATTATGTATCCTTACTATC
GTGGTCTTTTTTCTAAATTGAAGCTTGGTTCAAGTGATATCAGAAGAATT
CAAAATTTGTATGGAAGNGAGTGATATCGTTTGCTTACTCATCAATTTTA
AAATACAACATACAAGCTTTTTGATATTGAATTGACACGGATGTGGAGTG
GAGCAAGATTGATCAGAAAGAGGAAAAGAAACGGACTGTAATGGTCCATT
TTCAAAGTCCTATTTTGGGCCGCACATACGGTCGTTTTTTTGAATCGAGT
GACCATGAGTAAATTCTAGTATTCAGAGGGTCGATTATATGATTTCCCGG
CTTGAATCACACATCCAGGGGATGAAATATCGACTTCTTTTCTGGAAGAG
CCCAGATTTTAGAAAAAAGATTTTGGTATTTAGATTTGGTGCAAAATCAC
ACCGTGATGATCGAAGAGGAACTTGTCGAACATCATTTGATGGAAAAGGA
AAAGTTCTCGCGCATGCGTTTTATCCAAAAGATGGTCGTCTACATTTTGA
TGATGATGAAAATTTTGCTATCACTAAATGGAAATTCTGTAAGATTTAAG
TTTTTTCTCTCTCATAAAGCCTTTCGGGATAGTGGGAGGGGTAATAGGAT
TTTCCTTGAAGGAGATTAGTAATTAGTTCGAATCATAGAAAGATTTGAAT
TATGGAAGTTCGAATTAACAAGAGTCAACTGTATATATTATTTTTTACCT
TTTCCAGGGGCAACAAGTTACCAATGGGTTGCTGTTCATGAAATTGGGCA
TATTCTAGGTTTATCACACGACACACAAGATAAGAGCGCTATTATGTATC
CTTACTATCGTGGTCTTTTTTCTAAATTGAAGCTTGGTTCAAGTGATATC
AGAAGAATTCAAAATTTGTATGGAAGATAATTCTTGTCACTGAAATATAC
ATTTTAAATACAAAGAACTATTATACTTTTAACTTACTTGTTATGTCCTG
CTTTAACTATTCCATTTAAAAATATACAAAAGATGACATAGCCAAACTAA
TCTCCGAGCAGATTCTCTAAAAGTCATGGCTTCTGCCCTAGAATTGAGAA
TCTGCCCAGGTTGGCGCACCGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023825-exon-sc0000462-1575043694:179877..180184 | TCONS_00023825-exon-sc0000462-1575043694:179877..180184 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1575043694:178664..179034 | TCONS_00023825-exon-sc0000462-1575043694:178664..179034 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1575043694:177297..177451 | TCONS_00023825-exon-sc0000462-1575043694:177297..177451 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1575043694:176760..177127 | TCONS_00023825-exon-sc0000462-1575043694:176760..177127 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1510915933:179877..180184 | TCONS_00023825-exon-sc0000462-1510915933:179877..180184 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1510915933:178664..179034 | TCONS_00023825-exon-sc0000462-1510915933:178664..179034 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1510915933:177297..177451 | TCONS_00023825-exon-sc0000462-1510915933:177297..177451 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1510915933:176760..177127 | TCONS_00023825-exon-sc0000462-1510915933:176760..177127 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1491911889:179877..180184 | TCONS_00023825-exon-sc0000462-1491911889:179877..180184 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1491911889:178664..179034 | TCONS_00023825-exon-sc0000462-1491911889:178664..179034 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1491911889:177297..177451 | TCONS_00023825-exon-sc0000462-1491911889:177297..177451 | Clytia hemisphaerica | exon |
| TCONS_00023825-exon-sc0000462-1491911889:176760..177127 | TCONS_00023825-exon-sc0000462-1491911889:176760..177127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000462 | supercontig | sc0000462:176760..180184 - |
Blast
BLAST of TCONS_00023825 vs. Swiss-Prot (Human)
Match: MMP27 (Matrix metalloproteinase-27 OS=Homo sapiens GN=MMP27 PE=1 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 4.477e-37 Identity = 99/265 (37.36%), Postives = 132/265 (49.81%), Query Frame = 3
Query: 246 LTFFIAVLLVVFVSTED--QGAKDYLTQF------GFHDKHHFSDADLTESVRHFQITFGLNPSGKVDKDTQALMNTPRCGRPDNEYYGDLNYNAYYQPKWNKKELTYYFDSYTNDIDRDDLIRETAKAFKYWSDVSSLSFRRVDRN-GDIVIAFGAKSHRDDRRGTCRTSFDGKGKVLAHAFYPKDGR---LHFDDDENFAITKWKFWATSYQWVAVHEIGHILGLSHDTQDKSAIMYPYYRGL-FSKLKLGSSDIRRIQNLYG 1001
+TF A LV E+ Q A+ YL QF G H + + + + +R Q FGL +GK+D +T +M TPRCG PD YG Y P W K LTY +YT D+ R + + + WS V+ L F ++ + DI+IAF + H G C FDG VL HAF P G HFD+DEN+ F + VA HE GH LGLSH + D++A+M+P Y L K L DI IQ++YG
Sbjct: 12 ITFSSAFPLVRMTENEENMQLAQAYLNQFYSLEIEGNHLVQSKNRSLIDDKIREMQAFFGLTVTGKLDSNTLEIMKTPRCGVPDVGQYG------YTLPGWRKYNLTYRIINYTPDMARAAVDEAIQEGLEVWSKVTPLKFTKISKGIADIMIAFRTRVH-----GRCPRYFDGPLGVLGHAFPPGPGLGGDTHFDEDENWTKDGAGF---NLFLVAAHEFGHALGLSH-SNDQTALMFPNYVSLDPRKYPLSQDDINGIQSIYG 261
The following BLAST results are available for this feature:
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