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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024601 ID=TCONS_00024601|Name=TCONS_00024601|organism=Clytia hemisphaerica|type=transcript|length=2631bpRun BLAST on NCBI protein sequence of TCONS_00024601-protein >TCONS_00024601-protein ID=TCONS_00024601-protein|Name=TCONS_00024601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp MLYSRGLKRLITSLNKNKGYLSVGVRCSSVDYTYKNYNVPRRDNLKKVEERun BLAST on NCBI transcript from alignment at sc0000504:229373..237058+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024601 ID=TCONS_00024601|Name=TCONS_00024601|organism=Clytia hemisphaerica|type=transcript|length=7686bp|location=Sequence derived from alignment at sc0000504:229373..237058+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000504:229373..237058+ >TCONS_00024601 ID=TCONS_00024601|Name=TCONS_00024601|organism=Clytia hemisphaerica|type=CDS|length=24336bp|location=Sequence derived from alignment at sc0000504:229373..237058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024601 vs. Swiss-Prot (Human)
Match: D2HDH (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=D2HGDH PE=1 SV=3) HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0 Identity = 269/507 (53.06%), Postives = 355/507 (70.02%), Query Frame = 2
Query: 119 RGLKRLITSLNKNKGYLSVGVRCSS-----VDYTYKNYNVPRRDNLKKVEESDINYFKSFLGDRVVTDVDELEVHNRDWLNLVRGMSPVMLKPKTTQEVSQIMKYCNENSLGVCPQGGNTGLVGGSVPVFDEVILSLNLLNKIHEIDATSGTVECGAGVILENLDKELEKHDLMVPLDLGAKGSCHIGGNVATNAGGIRYLRYGSLHGNVLGVEAVLPDGTILDCLSTLKKDNTGYDLKQLFIGSEGTLGIITGLSLMAPPRPLATNVAFLGVESYEAVKEAYVKAKGCLAEILSAFEFLDNHAMSTVKENLGYSNPISEHPFYVLVETSGSNDGHDAEKLDHFLEVVMETGIAVDGTVANEVGKMQDIWKMREHIAEALLHDGDGCFKYDISLPVDVMYDIVSLLREKYSHCTNRIVGYGHFGDGNLHLNVVAPTYDKELMYELEPIIFGFTSKHNGSISAEHGIGFKKTKHMHYSRSPEAIEVMKKLKNLFDPKGILNPYKMLPS 1624
RG S + G L+ CS+ V T + Y V RR V + D+ F+ + VVTD + L+ N DWL +RG S V+L+P+T++EVS I+++C+E +L V PQGGNTG+VGGSVPVFDE+ILS +N++ + SG + C AG +LE L + +E+ D ++PLDLGAKGSCHIGGNVATNAGG+R+LRYGSLHG VLG+E VL DGT+LDCL++L+KDNTGYDLKQLFIGSEGTLGIIT +S++ PP+P A NVAFLG + V + + KG L EILSAFEF+D M V +L ++P+ E PFYVL+ETSGSN GHDAEKL HFLE + +G+ DGT+A + K++ +W +RE I EAL DG +KYD+SLPV+ +YDIV+ LR + +VGYGH GDGNLHLNV A + L+ LEP ++ +T+ GS+SAEHG+GF+K + YS+ P A+++M++LK L DPKGILNPYK LPS
Sbjct: 15 RGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTRERYPV-RRLPFSTVSKQDLAAFERIVPGGVVTDPEALQAPNVDWLRTLRGCSKVLLRPRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGILVCQAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLGLEVVLADGTVLDCLTSLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCKGMLGEILSAFEFMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGTMATDQRKVKMLWALRERITEALSRDGY-VYKYDLSLPVERLYDIVTDLRARLGPHAKHVVGYGHLGDGNLHLNVTAEAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYKTLPS 519 The following BLAST results are available for this feature:
BLAST of TCONS_00024601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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