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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025627 ID=TCONS_00025627|Name=TCONS_00025627|organism=Clytia hemisphaerica|type=transcript|length=1446bp
CTAAATTTCATTTATTTCCCCGTCCAGGTTATTTTTGGCGGGGGCGACTG
CGGCGGAAACTAATCCGCCCGAGCGTAGTTTTGGACCATGGATTTAAgaa
tgtaaacaaaaacattcCAAAGTGGACCTTGGACAGCAAATTCATCTTTT
CATTTCAGCAGAAATAGAATTCAGAGCAAAAGCCCACCCCTCTAAGAACA
GCTATGGCATTTGTACAAAGAGATTCACTTCTGTTAGCTTTGAAAGCAGG
CTGTACAGCTGGAGTAGGTCTAGTTGCTGGTTCTGCTCTTTACATCAATG
TGGTTGAAGTTCCATGTGCTCTCGATTATGATGCAGAACATGCTTTGCAA
TGTTGGAACAGCAACTTCAAAAGAGGAAAGAAGTTTGGACCTCTGACATA
TAGTGCAGCATTTCTGATGGCTATTGGACATTATGCTTTAACAAAAGGTA
CAGAGAAAGCAGATAAGAAGCTTCTGGTTGCACTTTTACTTGGTGAACTT
GTGTTCCCTTACACATTACTTTTCGTCCAACCAACAAACAACCTCTTATT
AGATGTAGAGGAATGCAAGAAGCAAGGATCAGACTACATTGTTTCGAATT
ATCACAAGTGGAACAAACTTCATGCCGTCCGTTCACTCATCTGTTGTAGC
ACTTTTGGTTATGCATTATATCGCCTTGCTGCAAACTAAGTTATATCCAA
CAATCGGAAATATTTTATTAGAATactttgagttttgtttattttatata
ttagatgaaaattttttgtaaacttAGATTAGAGTGAATTTGATTTGATT
AATGGTGCACCCTTATATTTTACAGTATTTTATTTTCCGTGTCATTCTTC
ACGATCTCACAtacaaaaaaaacacttttaagcTATCTGATGAATTTCAC
TTAGTTTAATATAGAGAAATTTCAAAGGTTTTTGTAAAATGAATGATTAT
ATTTTGTCAGACTTTGTCAGTGATTTCCCCTCTTTTAAtcatttcttttc
tattttttgttagcttactattttgtatttatttacCATGTGCACATTTG
TCACACATATATGTAATATATATTCAAATCAAACACGAAAAGTTCCATTT
TTCTGATCAATTGTGGGTCAAATCTGGTCAAGTGTAAACATAGCATTTCG
ACATTAAACTGTAAACAAATTTGTCATTGTTCTACGATTACTAACGACCC
GCATGATTCCcattgattttttctcaatgaaCCCAGGCtactttaatctt
ttttttcacaaCTTTCCACAAAAATGCATCTGGCTAAGGATTTACCAAGG
ATATCACGTTTAAGGAAAATAACGTGCCGTTGGTCAGCGTTCCTTTTTAN
CGAgtatcttgatgttcttataaagctcggagacagagatggaacagcaa
ttaactgaaaagacaatgcggtacatattccagccgcggctttctt Run BLAST on NCBI protein sequence of TCONS_00025627-protein >TCONS_00025627-protein ID=TCONS_00025627-protein|Name=TCONS_00025627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MAFVQRDSLLLALKAGCTAGVGLVAGSALYINVVEVPCALDYDAEHALQC
WNSNFKRGKKFGPLTYSAAFLMAIGHYALTKGTEKADKKLLVALLLGELV
FPYTLLFVQPTNNLLLDVEECKKQGSDYIVSNYHKWNKLHAVRSLICCST
FGYALYRLAAN Run BLAST on NCBI transcript from alignment at sc0000541:105662..110642+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025627 ID=TCONS_00025627|Name=TCONS_00025627|organism=Clytia hemisphaerica|type=transcript|length=4981bp|location=Sequence derived from alignment at sc0000541:105662..110642+ (Clytia hemisphaerica)
CTAAATTTCATTTATTTCCCCGTCCAGGTTATTTTTGGCGGGGGCGACTG
CGGCGGAAACTAATCCGCCCGAGCGTAGTTTTGGACCATGGATTTAAgaa
tgtaaacaaaaacattcCAAAGTGGACCTTGGACAGCAAATTCATCTTTT
CATTTCAGCAGAAATAGAATTCAGAGCAAAAGCCCACCCCTCTAAGAACA
GCTATGGCATTTGTACAAAGAGATTCACTTCTGTTAGCTTTGAAAGCAGG
CTGTACAGCTGGAGTAGGTCTAGTTGCTGGTTCTGCTCTTTACATCAATG
TGGTTGAAGTTCCATGTGCTCTCGATTATGATGCAGAACATGCTTTGCAA
TGTTGGAACAGCAACTTCAAAAGAGGAAAGAAGTTTGGAGTAAGTGCtta
tttacatgttttttttttataagcaagtgtatgccccttggtcaggctcg
tgtatgcttaagttctcaaagcatccaggcatagtttgtgcttattatat
gcttaagaattatgcttatgattcaccccgacccaattttttaatgaaat
ttcagaaattttgtaaaaatttgttcagattttgggagcagtggaatgta
gctagccgtggaatgtcttattttttacttgacctctaccaaactttttt
atacagataaaaatgaccacttgaaaaatattttaggctgacatatatgc
tcatgttatgcttaggaattctgcaaatctgagccttcatatgcttataa
tgcttataagcgttatgcttataaaaaaaaaacatgtatgtcaATTGTGG
GGCCTTCAAAATCTTGCTCGTTAGACGTCTCTCGTTAGGACCAAATCAGT
GCAGCTCTTGTGAGAGTAATGGCAGATACATCTTTACAGTTCATTTTACC
TAACCTTTCTGatccttacagtgtagtttgaatTCATATTTGAAGCCATC
CTTAAAAATAAGCCTGAGATGTCGCTCGTCATCCATTGGCATAAATGTAT
GTACCACCgacaactgctctaacttggtggtgggacgattggtcgaaaca
tgggactgttgcttatctggtctgtattttcacttatataaaatgaaaga
gaaatcgtgtatttttaaatacgccgttccttaactcaaatcaaatgact
ttgtaGGTTTgctgaaatggtggccaaattgccatcccatgttttatcgg
atagtcccaagttagagcaggtTGACAgtacaaaacaaataaaaaatgca
aaatgatTGATTGGAGTCGAAACTttaaagatttatccttacatACATTG
CATCTATCTAAAACGACACTAAAGTGAAGTGcgctctatcaaaagtacat
ccTTATACAGTGCATTTTGAGGGTCTTGAAAAACCTACCTGTACTAAAGG
TGCAGTATCCCCCGCAAGGGATTCTTAATCTGCGTTTGCCTGACTATTGA
ATCCAGTTTTAACAGAAATTTGCATcaataccgtgaagtcgggtaacttg
catcagtggaggctaacatgcatagccctaaaataaatcaaaatctgAGA
AATCGCAATCAAAATTACAACTTAAAGCTGAGCGGAAACaacttttatca
acatttttaaaagatctatctatatattaatagcggtgctttgtgtgtct
gtgtgtcaccactttcgttttcactttgtttgtgtttaaaattatgactt
ttagtctcttgctccacaaatttgttctattgcATTCGCGCCATTCgcaa
aagatcggatagagcttggtttagactttattcagcctttgttttgaaat
ttaaggcccatctacatttagtgaCTTTAATTTCTTCATAGACTtgcctt
tttctcttttcttttgttttaaatgttttcgaatgtatttaacgatcgta
tttattagtgacattcgaattcttttcaaaacaaaacaatttcatttcat
agaaaagaatatttcaaaagtacatgttttttttttataagcataacgct
tataagcatatgaaggctcagatttgcagaattcctaagcataacatgag
catatatgtcagcctaaaatattNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGctaacattccactgctcccaaaatctgaacaaatt
tttacaaaatttctgaaatttcattaaaaacttggctcggggtgaatcat
aagcatgattcttaagcatataataaacataaactatgcctggatgcttt
gagaacttaaacatacacgagcctgaccaaggggcatacacttgcttata
aaaaaaaaacatgtaaatcaaaccataaaaatcaaaaagtttgtgtacaa
caacagcattcaaagggcgatatttcacttctttcttcttataaaaatgt
tcaagtcgtcgttactgttaaaaagtgtgtacgtcattttttatgtttaa
attcgaaaagttatgacaagggtttaaaaaagcaacttagaattgtctta
ttttttttcgatctgataaaaacaaagagttgcactattctttgtgacct
tcccactttgtcctgaaaaattgtcatttaaactggacggcatatttaac
gcgagcgaagcgagaaaaataactacctgcagagtcgtttcagacgacac
tggtacagtaaacgatgctctttcagataacttaaacaaaaaattatgtc
gCGGGGGGGACAGTACACGATCCAtgtatggttaaaagataagacacccg
ggaaaggttagagttaaacgttgtagagatttcttttttttatttgatca
tttttttaaagccagcttcaacatccaaaggacttttagtgcgttcagct
acagcttaaccggcgtgcgacgccgggtaccggctagtattcTATAATTT
TGGGAGCTGTTTTAAAACTAGCTTTGAACATGCTATAAATCAAGTGATGG
TAGTCACTGATTCCTGTTTCAAAAGTCCCACTGTTTTTAAAACAAAGAGG
CTGATTTGTAAGGATCTAAGCAATGCATCTACCTTTCTTTGACTTAAAGC
ATGTTGgggttttcatcaaatttttcagaaaaggaTAACCTATCCTCTGT
ACATATAAAAAATTCTCACAACAATCAGCATTTTGAAGAGTTTTGCATGA
ATTTAGTATCACGAATCAGCCAAAACTTTTGGTTGAAAGTTGCCCTAAAA
ACACTAGAAATAGCAAAAATTACAATGTACTTTTAAGCTGAATATATTAT
ATAGGAAATTTTgtgtggatttaattttgcaagatttattttctcaaaaa
atagtgaaaatacatgaaaattaaatcttttgtatataatctttttgaaa
agaatcacaaaattattttcttgtttttcagCCTCTGACATATAGTGCAG
CATTTCTGATGGCTATTGGACATTATGCTTTAACAAAAGGTACAGAGAAA
GCAGATAAGAAGCTTCTGGTTGCACTTTTACTTGGTGAACTTGTGTTCCC
TTACACATTACTTTTCGTCCAACCAACAAACAACCTCTTATTAGATGTAG
AGGAATGCAAGAAGCAAGGTAACATAATTATTTGGTTCATATGTATGTTT
AATTTGGTCCCaactttttagaaaatcaaaactctatatacttttttaaa
aggaagaaatctttacggaagaaactttcgtAAGTATTTAGGTTCCGCAA
AATATGACGAAGGTCCCCATTCGTGAAAGTTAATTCCCgcaaaatatggt
caaaatTGTCATTTGTCATTTGCAAAAGTTAATTCCTGCGAATTATATAC
gtaattttttcaccaaaactttttttcttacaGGAGGATAGGTGAACCCC
CTATAAAATGTGCTTTTATAATGCATTTCCTCTTCTCatgtaaaaataca
aaaataggtGTACTTGTGAAGAAAagcttcaaaaacattttctgactATT
ATTGATTTCAGGATCAGACTACATTGTTTCGAATTATCACAAGTGGAACA
AACTTCATGCCGTCCGTTCACTCATCTGTTGTAGCACTTTTGGTTATGCA
TTATATCGCCTTGCTGCAAACTAAGTTATATCCAACAATCGGAAATATTT
TATTAGAATactttgagttttgtttattttatatattagatgaaaatttt
ttgtaaacttAGATTAGAGTGAATTTGATTTGATTAATGGTGCACCCTTA
TATTTTACAGTATTTTATTTTCCGTGTCATTCTTCACGATCTCACAtaca
aaaaaaacacttttaagcTATCTGATGAATTTCACTTAGTTTAATATAGA
GAAATTTCAAAGGTTTTTGTAAAATGAATGATTATATTTTGTCAGACTTT
GTCAGTGATTTCCCCTCTTTTAAtcatttcttttctattttttgttagct
tactattttgtatttatttacCATGTGCACATTTGTCACACATATATGTA
ATATATATTCAAATCAAACACGAAAAGTTCCATTTTTCTGATCAATTGTG
GGTCAAATCTGGTCAAGTGTAAACATAGCATTTCGACATTAAACTGTAAA
CAAATTTGTCATTGTTCTACGATTACTAACGACCCGCATGATTCCcattg
attttttctcaatgaaCCCAGGCtactttaatcttttttttcacaaCTTT
CCACAAAAATGCATCTGGCTAAGGATTTACCAAGGATATCACGTTTAAGG
AAAATAACGTGCCGTTGGTCAGCGTTCCTTTTTANCGAgtatcttgatgt
tcttataaagctcggagacagagatggaacagcaattaactgaaaagaca
atgcggtacatattccagccgcggctttctt Coding sequence (CDS) from alignment at sc0000541:105662..110642+ >TCONS_00025627 ID=TCONS_00025627|Name=TCONS_00025627|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000541:105662..110642+ (Clytia hemisphaerica)
ATGGCATTTGTACAAAGAGATTCACTTCTGTTAGCTTTGAAAGCAGGCTG
TACAGCTGGAGTAGGTCTAGTTGCTGGTTCTGCTCTTTACATCAATGTGG
TTGAAGTTCCATGTGCTCTCGATTATGATGCAGAACATGCTTTGCAATGT
TGGAACAGCAACTTCAAAAGAGGAAAGAAGTTTGGACCTCTGACATATAG
TGCAGCATTTCTGATGGCTATTGGACATTATGCTTTAACAAAAGGTACAG
AGAAAGCAGATAAGAAGCTTCTGGTTGCACTTTTACTTGGTGAACTTGTG
TTCCCTTACACATTACTTTTCGTCCAACCAACAAACAACCTCTTATTAGA
TGTAGAGGAATGCAAGAAGCAAGGATCAGACTACATTGTTTCGAATTATC
ACAAGTGGAACAAACTTCATGCCGTCCGTTCACTCATCTGTTGTAGCACT
TTTGGTTATGCATTATATCGCCTTGCTGCAAACTAAATGGCATTTGTACA
AAGAGATTCACTTCTGTTAGCTTTGAAAGCAGGCTGTACAGCTGGAGTAG
GTCTAGTTGCTGGTTCTGCTCTTTACATCAATGTGGTTGAAGTTCCATGT
GCTCTCGATTATGATGCAGAACATGCTTTGCAATGTTGGAACAGCAACTT
CAAAAGAGGAAAGAAGTTTGGACCTCTGACATATAGTGCAGCATTTCTGA
TGGCTATTGGACATTATGCTTTAACAAAAGGTACAGAGAAAGCAGATAAG
AAGCTTCTGGTTGCACTTTTACTTGGTGAACTTGTGTTCCCTTACACATT
ACTTTTCGTCCAACCAACAAACAACCTCTTATTAGATGTAGAGGAATGCA
AGAAGCAAGGATCAGACTACATTGTTTCGAATTATCACAAGTGGAACAAA
CTTCATGCCGTCCGTTCACTCATCTGTTGTAGCACTTTTGGTTATGCATT
ATATCGCCTTGCTGCAAACTAAATGGCATTTGTACAAAGAGATTCACTTC
TGTTAGCTTTGAAAGCAGGCTGTACAGCTGGAGTAGGTCTAGTTGCTGGT
TCTGCTCTTTACATCAATGTGGTTGAAGTTCCATGTGCTCTCGATTATGA
TGCAGAACATGCTTTGCAATGTTGGAACAGCAACTTCAAAAGAGGAAAGA
AGTTTGGACCTCTGACATATAGTGCAGCATTTCTGATGGCTATTGGACAT
TATGCTTTAACAAAAGGTACAGAGAAAGCAGATAAGAAGCTTCTGGTTGC
ACTTTTACTTGGTGAACTTGTGTTCCCTTACACATTACTTTTCGTCCAAC
CAACAAACAACCTCTTATTAGATGTAGAGGAATGCAAGAAGCAAGGATCA
GACTACATTGTTTCGAATTATCACAAGTGGAACAAACTTCATGCCGTCCG
TTCACTCATCTGTTGTAGCACTTTTGGTTATGCATTATATCGCCTTGCTG
CAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025627-exon-sc0000541-1491911889:105662..106050 | TCONS_00025627-exon-sc0000541-1491911889:105662..106050 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1510915933:105662..106050 | TCONS_00025627-exon-sc0000541-1510915933:105662..106050 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1575043694:105662..106050 | TCONS_00025627-exon-sc0000541-1575043694:105662..106050 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1491911889:109193..109379 | TCONS_00025627-exon-sc0000541-1491911889:109193..109379 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1510915933:109193..109379 | TCONS_00025627-exon-sc0000541-1510915933:109193..109379 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1575043694:109193..109379 | TCONS_00025627-exon-sc0000541-1575043694:109193..109379 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1491911889:109773..110642 | TCONS_00025627-exon-sc0000541-1491911889:109773..110642 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1510915933:109773..110642 | TCONS_00025627-exon-sc0000541-1510915933:109773..110642 | Clytia hemisphaerica | exon |
| TCONS_00025627-exon-sc0000541-1575043694:109773..110642 | TCONS_00025627-exon-sc0000541-1575043694:109773..110642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000541 | supercontig | sc0000541:105662..110642 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013901 | Anthrone_oxy |
Blast
The following BLAST results are available for this feature:
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