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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025859 ID=TCONS_00025859|Name=TCONS_00025859|organism=Clytia hemisphaerica|type=transcript|length=2250bp
TATGAAGTGTAAAAAGatcaaaagtaagaaaaataccAAATGTGAACAAC
TTCTAATGTCCACAATTAACAAACTGTCATGTATTTGGCAGACGCTCAGC
AACAATGTAGACTTGTTTTCATCTATCTGGTGACGCTGTGGTTATTCGTT
CTCAAATGTAATGCAAATACTTTTGctgttttgaaaaatcaacaaaaagc
aAAATGTCATTTGAATGTATGGATGAACAACTTGACCTACACAGTCACTA
ATCCCGCTTATGGAAATCCATCATGGGACCAATTCGAGTTTGATTATTGT
CTTTATGGTCATGATTGTTCTCCAAATTCTAACAGTTGGTATCTATGGGA
TGAATGTCATCGTCAAAAGCAGCTAAATACTACTATTTGGTGTGATTTTA
CACGGGTTATTGGAAAAGACAATGGATTTTACTTTCGAGCTATTGGAATG
AACTCTATTGATCACAACTTAGAAGAGATCTTCACACCTATATTACACAA
AAATTCAGGGACATCTTGTTCTTGTTCAAATCTTAAACCTTTACTTCCAA
CCGATGACTTAAAGTATAAGTTATTCACAGATGGTACTGTTATTACGGAG
ATAAACAATACTTTGGACACTATTGATAAATCATTACTACGTTTCTCAGT
ATCTTTATATTCTGGAGATAAGTTGCTACAAAGTGATTTGGAACTTGTAG
AGAAACCTAAGACATTCACATCAAGTTTGAAACTGGAAGGTCTAAAACGT
TGTCAAATCTACAAGATAAGGTTTGCATTTGAATATGGACGCTGTAAAGT
TGATGCCAACCAAAGAGTATTCACTGATAAAGAATTCATATTCGATTTAG
ACCATGACCCTAAAGCTCTAGATAACAAGCTTTGTGAAACGCAAGTTGAT
GGATCGGAAGACGAACACACTGGAGGACTTGTGGTGGAACATCAAATCTA
TATTATAGTTTCGGTCAGTTTAATTCTTTTTGGATTATTTGGGTATCTGG
CATATTACGTTTGGCAGACAAAACGACGAAAGGACTTGGACAGTATATCT
GTTGTTGGGAGAAGAATACCAGATGATTACCATGTACCACATCAACCAGT
AAACCATGAATATGCGTATGTCCAGAATCTCCAGCGAGAAACAAGCTTCG
ATGAACCAGTTTATCAAAACAGCCTCGATGGACCAGTTTATCTAACAAAC
CTCGATGTACCAGTTTCTCAAACAAGCCTCGATGAACCAGTTTATCAAAC
GATATCTGAAATCAATTCTCCCATAGATGTTCCATTGGATAGGAATGTTG
GTGCTTAATATAAAGGTTTGTTAAGAACTGAGAGGAATCTGCttaatttt
gtagattttctttATCTGTTTTGCTCCTAATCTTATCATATGATTCTTGT
TACAACGAAAGTCTGTTCTGTTCTGTTCTGTTTTTTGTTTCTAAAGTCTT
CCTATTTGAGAATTTAATAATAAAATACCCTCCCTTTACCCTTTTTTTAT
GGCAGCTTTCATTTTAACATTACTGCTTTGGGACCATTGAGTTCAAAGTC
CGAAAATCTATCGGGTATCGAAAAATGTACCACGATACCAAGATAAAGAA
AGTGCTGGTTTCAATCCGGCGTAACAAAATCAGCGGAAATCTTAAAGCTT
CACTTTTTCCttcttgagaaaggttgaaaattttcgcTTTCGGCTTTAAA
CTCGATGGTTGGGATCTAACCTTCTAacctttttcgacttttttatCGCA
CTGAACGTTTTTGTGACGTactttttttactgtttttttagttgttttta
aCGTATTTTATTGTAGattgatttattttattttatattttgtttttgtt
ttcaataacagaaccttacatgtttttttgataagcaagtgtatgcccct
tggtgtcaggctcgagtatgcttaagctttcaaagcatccagacatACCA
CATGCTTGTTATATTCTTTTGATCCACCCAACCAAATTTGTTAATAAAAT
CTTAGAAATTTTGTTAACATTCGATTCAAAAAGCGTTTAAATTTTCGAAC
AGTGGAATGTCTTGTCGATCGTGGAATGTCTTTCTTTTACTTGACCACTT
TCAAACCTTTTTGAACAGAAAAAGAATGAtcacatgaaaaatatttcagg
ctggcgTATATGCTtattatgttatgcttaggaaatctgcaaatctaAGC
CttaatatgcttataagcgttatgcttataaaaaatacatgtATCTTGAA Run BLAST on NCBI transcript from alignment at sc0000549:165371..167620 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025859 ID=TCONS_00025859|Name=TCONS_00025859|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at sc0000549:165371..167620 (Clytia hemisphaerica)
TTCAAGATacatgtattttttataagcataacgcttataagcatattaaG
GCTtagatttgcagatttcctaagcataacataataAGCATATAcgccag
cctgaaatatttttcatgtgaTCATTCTTTTTCTGTTCAAAAAGGTTTGA
AAGTGGTCAAGTAAAAGAAAGACATTCCACGATCGACAAGACATTCCACT
GTTCGAAAATTTAAACGCTTTTTGAATCGAATGTTAACAAAATTTCTAAG
ATTTTATTAACAAATTTGGTTGGGTGGATCAAAAGAATATAACAAGCATG
TGGTatgtctggatgctttgaaagcttaagcatactcgagcctgacacca
aggggcatacacttgcttatcaaaaaaacatgtaaggttctgttattgaa
aacaaaaacaaaatataaaataaaataaatcaatCTACAATAAAATACGt
taaaaacaactaaaaaaacagtaaaaaaagtACGTCACAAAAACGTTCAG
TGCGataaaaaagtcgaaaaaggtTAGAAGGTTAGATCCCAACCATCGAG
TTTAAAGCCGAAAgcgaaaattttcaacctttctcaagaaGGAAAAAGTG
AAGCTTTAAGATTTCCGCTGATTTTGTTACGCCGGATTGAAACCAGCACT
TTCTTTATCTTGGTATCGTGGTACATTTTTCGATACCCGATAGATTTTCG
GACTTTGAACTCAATGGTCCCAAAGCAGTAATGTTAAAATGAAAGCTGCC
ATAAAAAAAGGGTAAAGGGAGGGTATTTTATTATTAAATTCTCAAATAGG
AAGACTTTAGAAACAAAAAACAGAACAGAACAGAACAGACTTTCGTTGTA
ACAAGAATCATATGATAAGATTAGGAGCAAAACAGATaaagaaaatctac
aaaattaaGCAGATTCCTCTCAGTTCTTAACAAACCTTTATATTAAGCAC
CAACATTCCTATCCAATGGAACATCTATGGGAGAATTGATTTCAGATATC
GTTTGATAAACTGGTTCATCGAGGCTTGTTTGAGAAACTGGTACATCGAG
GTTTGTTAGATAAACTGGTCCATCGAGGCTGTTTTGATAAACTGGTTCAT
CGAAGCTTGTTTCTCGCTGGAGATTCTGGACATACGCATATTCATGGTTT
ACTGGTTGATGTGGTACATGGTAATCATCTGGTATTCTTCTCCCAACAAC
AGATATACTGTCCAAGTCCTTTCGTCGTTTTGTCTGCCAAACGTAATATG
CCAGATACCCAAATAATCCAAAAAGAATTAAACTGACCGAAACTATAATA
TAGATTTGATGTTCCACCACAAGTCCTCCAGTGTGTTCGTCTTCCGATCC
ATCAACTTGCGTTTCACAAAGCTTGTTATCTAGAGCTTTAGGGTCATGGT
CTAAATCGAATATGAATTCTTTATCAGTGAATACTCTTTGGTTGGCATCA
ACTTTACAGCGTCCATATTCAAATGCAAACCTTATCTTGTAGATTTGACA
ACGTTTTAGACCTTCCAGTTTCAAACTTGATGTGAATGTCTTAGGTTTCT
CTACAAGTTCCAAATCACTTTGTAGCAACTTATCTCCAGAATATAAAGAT
ACTGAGAAACGTAGTAATGATTTATCAATAGTGTCCAAAGTATTGTTTAT
CTCCGTAATAACAGTACCATCTGTGAATAACTTATACTTTAAGTCATCGG
TTGGAAGTAAAGGTTTAAGATTTGAACAAGAACAAGATGTCCCTGAATTT
TTGTGTAATATAGGTGTGAAGATCTCTTCTAAGTTGTGATCAATAGAGTT
CATTCCAATAGCTCGAAAGTAAAATCCATTGTCTTTTCCAATAACCCGTG
TAAAATCACACCAAATAGTAGTATTTAGCTGCTTTTGACGATGACATTCA
TCCCATAGATACCAACTGTTAGAATTTGGAGAACAATCATGACCATAAAG
ACAATAATCAAACTCGAATTGGTCCCATGATGGATTTCCATAAGCGGGAT
TAGTGACTGTGTAGGTCAAGTTGTTCATCCATACATTCAAATGACATTTt
gctttttgttgatttttcaaaacagCAAAAGTATTTGCATTACATTTGAG
AACGAATAACCACAGCGTCACCAGATAGATGAAAACAAGTCTACATTGTT
GCTGAGCGTCTGCCAAATACATGACAGTTTGTTAATTGTGGACATTAGAA
GTTGTTCACATTTggtatttttcttacttttgatCTTTTTACACTTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025859-exon-sc0000549-1491911889:165371..167620 | TCONS_00025859-exon-sc0000549-1491911889:165371..167620 | Clytia hemisphaerica | exon |
| TCONS_00025859-exon-sc0000549-1510915933:165371..167620 | TCONS_00025859-exon-sc0000549-1510915933:165371..167620 | Clytia hemisphaerica | exon |
| TCONS_00025859-exon-sc0000549-1575043694:165371..167620 | TCONS_00025859-exon-sc0000549-1575043694:165371..167620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:165371..167620 . |
Blast
The following BLAST results are available for this feature:
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