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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025875 ID=TCONS_00025875|Name=TCONS_00025875|organism=Clytia hemisphaerica|type=transcript|length=3742bpRun BLAST on NCBI protein sequence of TCONS_00025875-protein >TCONS_00025875-protein ID=TCONS_00025875-protein|Name=TCONS_00025875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=785bp MNFRQPPMGGGYGQMPSTDHGIQYQPNNDKFRMQNNNFPRRERGRSPGSSRun BLAST on NCBI transcript from alignment at sc0000550:188626..207887+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025875 ID=TCONS_00025875|Name=TCONS_00025875|organism=Clytia hemisphaerica|type=transcript|length=19262bp|location=Sequence derived from alignment at sc0000550:188626..207887+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000550:188626..207887+ >TCONS_00025875 ID=TCONS_00025875|Name=TCONS_00025875|organism=Clytia hemisphaerica|type=CDS|length=21222bp|location=Sequence derived from alignment at sc0000550:188626..207887+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025875 vs. Swiss-Prot (Human)
Match: MINT (Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 1.054e-53 Identity = 104/268 (38.81%), Postives = 164/268 (61.19%), Query Frame = 3
Query: 861 VTVKNILTREPDTVLEESLYHEFKKYGEIVNIIIKVNSNQRYAYVQY-AQSDQAQDATRSTGKLFMGQELKV-AVKGSRNGAADTATGFD-------ANATRTVFVGQLDKSVTHGELREIFERFGEVVDVDIKKMHTGITTYSFVQYIDIQSAIVARQKMDRQLIRNNRIKVGFGRGTPTNSLWIGNLAAKTTENDLMKYFASFGHVQQCLIDRKVWQALLRYRTIESCTKAFAEMHGKHVNGSKIVVDYASPACRESYYNRMEKHG 1637
+ V+N+ R DT L++ L+HEFKK+G++ ++ I S +RY V + Q DQ + T S GKLF G +++V A G + + D ATRT+F+G L+K+ T+ +LR IF+RFGE+VD+DIKK++ G+ Y+F+QY DI S A +KMD + + NNR+K+GFG+ PTN +W+ L++ ++ L ++F +G V + + DR AL+ Y IE A E G+ + G+KI VD+A+ + ++Y+ MEK G
Sbjct: 337 IKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVN-GVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSG 603 HSP 2 Score: 120.168 bits (300), Expect = 4.585e-27 Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 3
Query: 234 MPRESRHVWVGNLPEKVQESEVAEYFARYGRVEKIKLLPKISPDGGRAAFVDFVDIRSATKANEAQNSIGGRDLRTNYNEPG 479
M RE+RH+WVGNLPE V+E ++ E+F RYGRVE +K+LPK +GG AAFVDFVDI+SA KA+ + N +G RDLRT+YNEPG
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVNKMGDRDLRTDYNEPG 82 HSP 3 Score: 96.2857 bits (238), Expect = 1.050e-19 Identity = 44/79 (55.70%), Postives = 62/79 (78.48%), Query Frame = 3
Query: 2778 LMDLLRRFPVMWQGLLGLKNETAAVQMHFLSGNLQLVDQSLPRSAQPNEVPPPLRISQRMKLEPSQLEGVDKRIQVQYN 3014
++ LL+++P++WQGLL LKN+TAAVQ+HF+SGN L +SLP S E PPLRI+QRM+LE +QLEGV +R+ V+ +
Sbjct: 3498 MVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLS----EGGPPLRIAQRMRLEATQLEGVARRMTVETD 3572 The following BLAST results are available for this feature:
BLAST of TCONS_00025875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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