TCONS_00025929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025929
Unique NameTCONS_00025929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025929 ID=TCONS_00025929|Name=TCONS_00025929|organism=Clytia hemisphaerica|type=transcript|length=1067bp
TTACAATGTTGTACTTCGAATTATTTTCTTGGTTCATTTTTGCTTGCAAA
GTGTTATCAACAAATGGAGATGACGGAGTCGCTTCAAGTTCTTTGACGAA
GATTCTAAAAACATCATATGATAAAAGAGTCAAACCGTTTGGCAGAAATG
GGACACTCGATTTGGAAGTTCAAATATCAGTGGTAGCAGTTGGTCCAATC
AACGAAAAAGATTTTACCTTCAGATTGGATTATTACTTGCGACAATGGTG
GGTGGATGAGCGGCTTGTCTTCCCTGAAAAAGGGAAGATAACGTTTGGAG
GAAATCCAAAAGATTTGATTTGGTTACCGGATTTGTTTGTTCGGAATTCG
AAAGAAGTCAAGATGCACCAATCATTTCAACAATCCATTCGAACAACTAT
AAATCATGATGGTAACGTTTACATGAGCGCAAGaataaGTTCAATTTGTT
CGTGTAACATGAATCTACAGAATTATCCGATGGATCACCAAACATGTGCC
CTTTCTATGGAAAGCTACGCATACCAAGGTAACGAGTTGAACATTTCTTG
GCACCAAGCACCTATCGAATATAAACCAGAAAACATTCAAGTTGAAGGCT
ACAAATTGACCAGCATTGATGCTTCCTCTGATGTGACAAATTATATGACT
GGTGAGTTCTTCCAACTACTCCACATATACTTACACGTGGAACGAACTGT
CTCTTACTATATCTTTCGTTCGTACGTTCCAAGTTCATTTCTGGTGATTA
TGACTTGGGGTACGTTCTGGTTACCTGTCAACACTTATCCTGCTCGAGTT
GGNtcgtcatcattttcaaaaattttcttttgattttttaaatttgtatt
atcaatgcctatcacgtgtcaaaatttgaaaatgattgaataaacagttt
agaagttatcagcactttaaaattttgagttttaagcgatttaagctggg
ttttatgtcatgtttcacaataaagtcgtaaaacctgatctggacaacct
atgaccctaaaattttgcacaagtactcttaataagattttattaaaagt
cagaaagtttcaagtcg
Run BLAST on NCBI

protein sequence of TCONS_00025929-protein

>TCONS_00025929-protein ID=TCONS_00025929-protein|Name=TCONS_00025929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
TMLYFELFSWFIFACKVLSTNGDDGVASSSLTKILKTSYDKRVKPFGRNG
TLDLEVQISVVAVGPINEKDFTFRLDYYLRQWWVDERLVFPEKGKITFGG
NPKDLIWLPDLFVRNSKEVKMHQSFQQSIRTTINHDGNVYMSARISSICS
CNMNLQNYPMDHQTCALSMESYAYQGNELNISWHQAPIEYKPENIQVEGY
KLTSIDASSDVTNYMTGEFFQLLHIYLHVERTVSYYIFRSYVPSSFLVIM
TWGTFWLPVNTYPARVXSSSFSKIFF
Run BLAST on NCBI

transcript from alignment at sc0000555:148574..159335+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025929 ID=TCONS_00025929|Name=TCONS_00025929|organism=Clytia hemisphaerica|type=transcript|length=10762bp|location=Sequence derived from alignment at sc0000555:148574..159335+ (Clytia hemisphaerica)
TTACAATGTTGTACTTCGAATTATTTTCTTGGTTCATTTTTGCTTGCAAA GTGTTATCAACAAATGGAGGTGATCTTATAcctatttttttatctttctg aTAAAACCAGATCTTTTGAACAGGAGAATTACTACACTACGCTACTACAT TACTCCAAAATTCTTCTGAAGCCTTCgggtgttcttaatttttttgaggt ttGACTCTAAAAATGTCCctaattttaccattttaagagcgtttttgtgc aatttttaaaataaatttggtCGTTTTAAATCTGCaaaactttaaaatgt tctCTCTTGATATTTTTGCCGTCAGAGCTTTATGTCCTTGTTCTAGTTTG TTCCTAATCTTCTGACCCTAAGTGTgaataattttctgatttttccaacc ctcaCATGTACTTCCAGGGTAAAAAAGCGGCGCACAACCGTGCCCTTTGC TTACCTAGGTGCCCCCGGGGTGTTGAAACTAACACACTAGAACACTAAAA CACTGACacattttcttttatattccagATGACGGAGTCGCTTCAAGTTC TTTGACGAAGATTCTAAAAACATCATATGATAAAAGAGTCAAACCGTTTG GCAGAAGTAGGtatatttttgaggaaaaactaaaatttatttgaaaataa ctgTGGCGGAGAACTGTAGTCCTCATAGAATAATCAAACTTTTTATGCTT ATCTCTAATGAGGCATGTGTAGCTTATTTCCTCTTACTTCGGTCGTGAAA TTTGCACACTTTGAGACTTGTTttcccgtgtattccaggctttatttacg ttactgataagACACCAGAAGAAATTATCTgacgctatcagtaagcatca aaaagccaATAATACGCGGGGAACGAACGTTGATATCGATCTTGTCTAAA TTACAGGCTTCCACCAAATCACGTGTTCTctcgagtgacttagggcaagt ctcaaaaacctaacagtttaccctaagttttcgctaccaatagaAGCCAT TCAGATatccacttagggctctaaagtacctctataTGTTGAAGTTTATG ACTCAGGTTGTTACCTAATTAAATATCACCCCCAAAATCTataattaaag aaattgtaatcatgacgtAATACTTTGATCGAATAGCATACCgtcgcgaa tctaaaaatagacattgattttttagtttgactgaaattcaaccccatca ccctttgcgtttattacgcttgcacgcaaattacactcaattacaaagaa caagtaataactttcacgacttttgaattaagagGAAAAGGATTGTGCGA TTGAATTTCGGTTCAttaagatgcatctttggtccaaatttgacaaagat tcaACGTGTACTTAGAGAGTTTttttacgatttatgacgtcataatttga tgacgtcataattcacactttctttgatgattattttttaggttaatatt taattacgtcaCAACCGGGTCCTGAGACCTTAAGGTATAGGTTatctaaa aatccataagtgaatcGCGGATTCGGGATatttctgtttctaaaaaatct agacacgccctaactGTGTTAATGAGCTAATTGATGTAGAAATCCTAGTT GATATCTggtgttattttttcaaagtcttttaatTCGGAATAAAATGAGC TAATTTAACTAAGCTTACTCTAagctttaatttatttttacatcTAAAAG ATGGGACACTCGATTTGGAAGTTCAAATATCAGTGGTAGCAGTTGGTCCA ATCAACGAAAAAGATTTTGTAAGTGATTTGTTTTTTCGTTTGTcagtttt ttcgttttttcgtttgattttgataaaagtgatgcgtatcgtgtatgaaa ttccgTCCGACAGTTACCCCTGTTTTTTGTCTTTGAGGGGTATTATCCAA ATTAAAATGTAGGGCCCGTTGAACGGCGAATTTCGCCGGTCCAAGGCacc aaaaaaattacaattcgccGTTTGAAAATTTCGGTTCgccgcctcaagta catatttacgctaatcaatacactgcaCTTGCTAAGAATTTGccggccta gaatctagaaatcgctagagttaatttttttattcgCCAGCCTACCAAAA ACACAGTAAAACCCCTGAAAATGGTCGAactttgctaaattttccaaGAT TCTGCTTGATTAGTGGAGAGCTATAGAGAATCTAAGTAGGAAAATTAAGA AGACAAGGgaaaaaacagaaaacttttttccagcagaagTCCCTTTTTCG AGAAGCTACCTAATCAAATCCATTTCATCCTCATCTCTATTAACAGACCC GATATAGTAGGGGGGGCAAACCCTTAGGATTCGTAGCACCTTTCGTGGGA CTCAAATACATGTGATTTGTTCGAAAGTAGATaggattttgaaacttttt tgagaggggcCCGCGAATTAGGcctggaaaaagtttttttttccaaaata actGACGTTGTAGGCAAAACTAAAACTCTTAACCcccaaaatgagtaaaa aattgaCCATTTTTAAAAGTCGAATTCAACAGAAATGATTGTTATCATCC GAtggagcatgaaattctgagcaaaaaaagtatactacaaCAAGTACAGG CTCTCAAAATCTTTTGAGTCTCAAATCCTTCAATCCTCCTGTTAAACTTT TCTGTTGCGTGGGGTCAAAACTCTTGTGTTttacaacaacaaaataatca gcTAGAGAAACAGATACTTTTATAAGTCGCTTAGCGCTTTCCGAAATAAA CATCgatttttccatttcttttttaaCGTATATGGTATTATACTTTAGGG TAAGCCATCTGGTCTACAAGCCTTTTTTTCGATCATCTCGTCTAACAACA CGAAGAACAAACCTTACCTTAACCTTATatggaaaaaactttttttccga aaGAAAATTTAGGATAAGGGTCACTTTTGATGAGAATATGAACAACAGTG GATAAAGTTAAATTTAGAGATCAACCAAATTATCGAATTGAAGTATAAAC TTATTTTCTACATAACATTGACGTCTATGCCTGTCGGGAACGGATTTAAA AAACCTATCATTAAGGGAATCTTCGGTTCTTTTATTCTCTTGCGACCTTT TAATAGTAAGGTCACTTTCCCATTAGAGGAAAACATTTGGGGCAATTCAC ACGAAGTTCCTTCTTTCGAACCTCCTTCTTTCTAACGAGAATAgttcttt tcataaattacgtcaaggTCAagagcaacgcttacctcgttttccaaaat attgttacatgttttttttataagcatatgaaggctcagatttgcagaat tcctaagcataacataagcatatatgtcagcctgaaatctttttcaaatt gtcattttttatctaggttaagtaaaaaaagacattccacggttTCCTAG ATTCCATTGCTCCCGAAATCTGAacagatttttacaaaatttctgaaatt tcactaaaatcttGGCTCGgagtgaatcataagcataagttatgcataca cgagcctgaccaaggggcaagAAATATACTCTtttataaaagtatcactt gaaGACTGAATGGATTTAATCACcgtggtaatggtttcaaaacgaggcag tcttTGTATAAGCTGAAGAAGTTCAACATTGTTAGAGTAAACGGCCCcct tttttttcctttccaGACCTTCAGATTGGATTATTACTTGCGACAATGGT GGGTGGATGAGCGGCTTGTCTTCCCTGAAAAAGGTACATTATTACAGTAT ACCCTCGCTcactcgaacttctattattaaAACCTTCCTATAATCCGAGC ATATTCCCAGTCCCCGTCAaagagaaaccctcttaaaatagtactttctt taattcgaaattTTATTTGTAATTGAAATTGTAATTgaattctctctgta attcgagcaGATTTGAtttcccgttcgagttcgaattagcgagagtcaac tgtattttttatttaagaaaagGTACATTTGATGATGCTCTTTAATTCGA AGTTCTACTCTTCGGCACGTACTATTATTCGATATACATgttattttata agcataacgcttataagcataggGTGAATCATAATCATGATTCATAAGCA TGTAATATGCATAAGCTATGCTTGGatgctttgaaaacttaagcatacac gatagcctgaccaaggggcagacacttgcttataaaaaaaacatgtagta ttGAAAGTTACCGTCGAATAGGaatattctcaaaaataatgCTCTACCAT TCGATACGTTCTgttatttcatgaaaatttcccttgaaaatcgaatgcga gagcgtcaactgttatgtttttcattaaaaatttcaaacttcaatTTCAT TGTAAGTATATTCTATGGCCTAGTTtataaaaaaagggaaaaaaagaaac aaacaaacaacaGCCGAGTCTCGACCCACATTTTACCTTTCTAGAAAGTA GGCGTATAAAAGGTTTTTTCGAACTTTGACCTAATTTTGCAAGAGCCTTG TACAATGCAAGCTTTTAGGTTTCGGCATTTTAGCCTTTCGGACCTCTATA CTTCATTATGTTTAAATTTCGATATGATAGTTTCACGATGTTAAAGTGGC GACCCTtggcttaaaattcaaatttagcaGGCATTCTGCTACCCGGGAGG GGTgtcactcatatgatctggcctacgtcatgtgctgcgcttaagggtgg ggtttttcagcatccaaaaatgcactgtaataagagtacgattttgaaaa gcagattttgcgcggaaCATActgtcgtttcgaaatcgagtagccacccc ccccccctgggttcTGCCAACCTTTTGAGTTATGAACCTTTTCATAAAct acgtcacgagcaacgcttgcctcgttttcaaaatattgctatgttAATTG ATTCCCTGATGAGTTCTTCAAACGTAGTTGGCTCTATTTAAAACATAGCA CTTGGCGCCTCAAGGGATCtgatcaccttggtaatggtttcaaaaagAGG CAGTCGATGTACTCAAattatttatgaaaaggcctatttcTTCCTTCAGT AAGAttcatttttcaagtttattAGTCTAGTATGCTAGCTAAAAAATCTG GCTCTAAGTCGTTTCTttcatacagggtgtcccggtGTAACGAAAAATAA GTACTCCCTGGAAAAAAGTACTCCCGGAGTACATTTTTCCCAGGAAAAAC ATACTCCCCAGTACTTTTTTCCTAGGAAATTGATACCCCCTCTGGGAAAT TTGTACCCCCAGTAAGGGAGTACTTATATTTCCTGCAGaatctgaaaaaa agaagactctgCATTGCACTTTAATAactattattcaaaattttatatac TCGACAAAAGTCATCAAGCCCCCTTCCTCTACCTTTACTAAAGATCTttt gaattctgaaaatgatatatttgatgCTTCCAACGGATTTAGTCTGGAGA ATAGATAAAGAAAACGGGGTCACTTTTAAGATTTCGACCACGTGGTGCCA AGAAATGGCTAGTTTTAGGCATAAAGAAATCGACATTTGTGGTAATTTCC GATGACGCAATCTATCCATCGCAATTTATCCAATCGGATAGTCCTGACTT AATAGTATTCAAAATTGTGTGGTTTTCTAGAATTTGTCTCGATCTCTCGC CTTTTAGGtcgataaaaacaccaaaaaactgctgagtcagcaaaaattCT TGATAATTCACGATATTCAAATTAAAATATCTGCTGATCTAGTCATTAAA ATTAAGGTATAATCTCAAAAAATGTAGTAAATAGCCGAACGTGCGAACCA CACTGGGCTCAAATAAACTATCGTCCCCAGGCcccgaaaatcaaaatttt gaaaaaaaatgaacataCAAACAcaccaaggaacaagtgtgccaaatttc agcaaaatccaaccattttcgacgtctccaggctgccccaaagttttagc ctcgttttggcgaaaaactcgtccNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNAAGGATCAagcgtgcaaaatttcagccaaatccgaccatttttg aagtctccaggctaccCCAAAGATTTAGGACATActacattgtcagattg tagctcgactgaagttgagaacaggGGGTACTTTTTTCCTGAGGAGGGTA cgaatttcctaggaaataagTACCCCTAGGAGTACCTATCTCCTAGGAAA TTTGTACTGGGGAGTACTTATCTCCTGGGAAATAAGTACTGGGGAGTACT TTTTTCGGGGAGTACTTATTTCCTGTGACACCGGTTAAAAATCGTATGTC AGAAAATGACTACAAAAATGTTTCTACTtgtagtacacgttttttttctt cttcaagaaacacacttttaagaaacatgaggctcagaatgcctaaaaac taagaaacatttaagaaacatgctgaggctgagaatgagaaaataacatt ttttaattcggtttttcttaagaaccttccaatccagccttccatgtgGC TGATTATgcaaaaaagtttagaaacatgtaagaaacatttaaggctcaaa aggtcgatttcttaagaaacattgaggctgcttggtaaaactagtttctt aaaaaaaaacgtgtagtgttcTAAGATAGGACTTTTTTCCGGGACATCCT GTACTGTTGGCGGGAGAGTCAGATAACACCTACACACCCCTTCTCGTAAC GATCAGAAGTGACACAATCACAGTGtgaactttttgtagaaaaaatgCCC GTCTTTTCATTTCTAAAACATCCATATCTTTAGACGTGATATTTAGAATT CCCAAATTTCAGCGTCGAAATAATTGTTTTCTCGACATTTTTTAAGCTAT CAAATTATGATCACAGAAAACTGTATGTTCGGTCACCCTGCTGACCCAAG CCGTTCCTGAAGACTTTGAAGAAAGATCGAATTCAGGAACTACGTGTCAA AGGTTTCCGACAGACTATCTATTTTTTTCTGTCAGGGAAGATAACGTTTG GAGGAAATCCAAAAGATTTGATTTGGTTACCGGATTTGTTTGTTCGGAAT TCGAAAGAAGTCAAGATGCACCAATCATTTCAACAATCCATTCGAACAAC TATAAATCATGATGGTAACGTTTACATGAGCGCAAGGTAAGAGATGCGAA GACAGAactctaaaataaaaattgaaatacacATTTGTATGTTTTTTTAT GGGAGCCACATCATTGAAAATTTTCGTAGCTCGGGTTATCATTTTGATAC ATATGGTATGATCTTTACAAAACAAAAGCTTGACAGGGAGGCCTCATTAG ATACCgtttatgaaaaagaaaattcaactttagaaagaaaatctttcatA GTACTCGATGTTTTTAACAAATCATTCCTTTGTTTCGAAAAGTTACATCA ATTTGATATACTGATTCTGGTTAAATTGACTGAAACTGTCGACCTAGTAT CGTCGTTGGTTTTACcagatcaaaattgaaattccatCCAAAACACAAAT ACAGTTTTTTGCCCCTTCAGTTCAGAAACTCTAAACTCACTCTACAAATG ATGCAATCTCTCCATAAAGTTGAACAAATTTTCAAACCTCCTTTATGAGC GTACGAAAGAGGGGACTATaattaattttacattttataaattaCAGTTA ACtcactctaattcgaatctGATACTTGtgtctctctgtaattcgaacta gaaTATTGGCTCCCTCAGCTGGagaaaatttacattttttttttataagc ataacgcttatacgcatatgaaggctcagatttgcaaaATTCTTAACTAT AACATAAGCatggaatatttttcaagttgtcatttttatcgatttaaaaa ggtttggtagaggtcaagtaaaaaaaaagactttccgTGGTttcctacat tccactgctcccaaaatttcactaaaaacttaGCTCGAGGTGAATCATAA TCATGATTCATAAGCATGTAATAAGCATAAGCTATGcttggatgctttga gaacttttAAGCATACACGatagcctgaccaaggggcagacacttgctta taaaaaaaaacatgtaacttaTTCTCTGTAAATCGAACTTTTCTTTAATT CGGATAATTTTTTTgctcccttgaagatcgaattagagagagtcagcttt acactttttttacaatagaataaGTTCAATTTGTTCGTGTAACATGAATC TNAGAGAGTCCAccttacattttttttacaatagagTAAGTGCAATTTGC TCGTGTAACATGAATCTACAGAATTATCCGATGGATCACCAAACATGTGC CCTTTCTATGGAAAGCTGTaagtcttttttatttcaattcatattttctt ttataagagcaaaatatataagaacacaaagcttcgatggtcaaaatttt attaagaacaagttaagaacattttaaggctttgtggactgtaaaacacc cgatttctcaGGACAATGGACAAAAGTACTcccaaaatgatgaaaataaa aacattttgaggctttaaattcaaaagttaagaacagcCGATGgcgtcaa aaattttggatgctcttataaaaaaacgtttatccAATGTTGTGTAAAAG GTTAATTTTCTTCTTGAATCTTCTACAGACGCATACCAAGGTAACGAGTT GAACATTTCTTGGCACCAAGCACCTATCGAATATAAACCAGAAAACATTC AAGTTGAAGGCTACAAATTGACCAGCATTGATGCTTCCTCTGATGTGACA AATTATATGACTGGTGGTAAGGATGTTGTTTttgcaacctcgtccccgtg tatcccaggctttatttacgttatttgattgacgccagagaattatctag cgctatcagttagcatcaaaaagctgataatgcacaGGGAACGAGTTTGA GACTTTCGTACTTTTTTACTCGGGTAAAtcgtaaattaatgcgtgtccaa attttcgttaattcttcggacccatcatcacccctcctagcataataaat tatacctttaaagaagcgcattactatgtagaacatgaaaatcggtgtta cttaaatttaggttttgccaattttgcgaaaaaccgcaaaaaccaaaaaa tgctgacgtcagcaaaacttgttttttaaataactccagtttggctaatg gtataaacatgaaatttggaccaaagttgcatatcagtaataaaaacatt ttcgcataatcatttttttcaaattttgctgacgtcagcagaaatcagca aaatacgaaaatttgcaataaagtgcagacatcagcaaaatttcaaaaaa atcttttttcataatGATCCTTTTAATAATGTGCagctttggtccaaatt tcatgttcataccattaggcaaactggagttatttaaaaaacaagttttg ctgacgttagcattttttgtttttttgcggtttttcgcaagaTTGGCAAa gcctaaatttaagtaacaccgattttcatgttctacatcgtaatgcgctt ctttaaaggtataatttattatgctaggaggggtgacgatgggtccgaag aattaacgaaaatttggacacgcattaatatACCCGAGACTTTTAAATTG AAGGCCCCAATTTCTAGAGACAATgattcgattgttttcacggggtccac ggccagtcGGCTCGGCTATCTTCGAACTGAACGGAAGCGGGGCTCGAACC GGGAATTCCTGGTTTTAGACGCTGACGTCTTGACTACTCGGCCGTTACTC CTTAAAATGCAACACCGGCGTGTTTGATTGTTCggggaacttttggattg taAGTGCGATATCTCTTcaacaaacaaacaacaaaccaaAGCTCTGGGAG TACTAGGGTTGGAGAACTTTGGGAATGTGTGGACGTGGCTTAAGGGAAAC GACCTTTAAAGTgacaaaatcagcaaaaaaatgaccctgacagaaaattt ttgaaagctgTCTAACTTTGGAGAGATTTCTTACTTACTTTCGTACTCTC AATGAGATCAAAAAAGGAAAACCCCGACCTtgtgaaaaactattttttac tTTGTGCTGTTTTTTGTAATACTTTGAGAGGCTTTGGGAAGGTTAAAAAC GACCTttaccgtctgcacatacccagcacctatctTTGTATAAACACCGG ACAAAGTATTTCGAAGACTGACTGATTCTTTTTTATGCTTCTCATTCAGA GTTCTTCCAACTACTCCACATATACTTACACGTGGAACGAACTGTCTCTT ACTATATCTTTCGTTCGTACGTTCCAAGTTCATTTCTGGTGATTATGACT TGGGGTACGTTCTGGTTACCTGTCAACACTTATCCTGCTCGAGTTGGNtc gtcatcattttcaaaaattttcttttgattttttaaatttgtattatcaa tgcctatcacgtgtcaaaatttgaaaatgattgaataaacagtttagaag ttatcagcactttaaaattttgagttttaagcgatttaagctgggtttta tgtcatgtttcacaataaagtcgtaaaacctgatctggacaacctatgac cctaaaattttgcacaagtactcttaataagattttattaaaagtcagaa agtttcaagtcg

Coding sequence (CDS) from alignment at sc0000555:148574..159335+

>TCONS_00025929 ID=TCONS_00025929|Name=TCONS_00025929|organism=Clytia hemisphaerica|type=CDS|length=7479bp|location=Sequence derived from alignment at sc0000555:148574..159335+ (Clytia hemisphaerica)
ACAATGTTGTACTTCGAATTATTTTCTTGGTTCATTTTTGCTTGCAAAGT
GTTATCAACAAATGGAGATGACGGAGTCGCTTCAAGTTCTTTGACGAAGA
TTCTAAAAACATCATATGATAAAAGAGTCAAACCGTTTGGCAGAAATGGG
ACACTCGATTTGGAAGTTCAAATATCAGTGGTAGCAGTTGGTCCAATCAA
CGAAAAAGATTTTACCTTCAGATTGGATTATTACTTGCGACAATGGTGGG
TGGATGAGCGGCTTGTCTTCCCTGAAAAAGGGAAGATAACGTTTGGAGGA
AATCCAAAAGATTTGATTTGGTTACCGGATTTGTTTGTTCGGAATTCGAA
AGAAGTCAAGATGCACCAATCATTTCAACAATCCATTCGAACAACTATAA
ATCATGATGGTAACGTTTACATGAGCGCAAGaataaGTTCAATTTGTTCG
TGTAACATGAATCTACAGAATTATCCGATGGATCACCAAACATGTGCCCT
TTCTATGGAAAGCTACGCATACCAAGGTAACGAGTTGAACATTTCTTGGC
ACCAAGCACCTATCGAATATAAACCAGAAAACATTCAAGTTGAAGGCTAC
AAATTGACCAGCATTGATGCTTCCTCTGATGTGACAAATTATATGACTGG
TGAGTTCTTCCAACTACTCCACATATACTTACACGTGGAACGAACTGTCT
CTTACTATATCTTTCGTTCGTACGTTCCAAGTTCATTTCTGGTGATTATG
ACTTGGGGTACGTTCTGGTTACCTGTCAACACTTATCCTGCTCGAGTTGG
NtcgtcatcattttcaaaaattttcttttgaACAATGTTGTACTTCGAAT
TATTTTCTTGGTTCATTTTTGCTTGCAAAGTGTTATCAACAAATGGAGAT
GACGGAGTCGCTTCAAGTTCTTTGACGAAGATTCTAAAAACATCATATGA
TAAAAGAGTCAAACCGTTTGGCAGAAATGGGACACTCGATTTGGAAGTTC
AAATATCAGTGGTAGCAGTTGGTCCAATCAACGAAAAAGATTTTACCTTC
AGATTGGATTATTACTTGCGACAATGGTGGGTGGATGAGCGGCTTGTCTT
CCCTGAAAAAGGGAAGATAACGTTTGGAGGAAATCCAAAAGATTTGATTT
GGTTACCGGATTTGTTTGTTCGGAATTCGAAAGAAGTCAAGATGCACCAA
TCATTTCAACAATCCATTCGAACAACTATAAATCATGATGGTAACGTTTA
CATGAGCGCAAGaataaGTTCAATTTGTTCGTGTAACATGAATCTACAGA
ATTATCCGATGGATCACCAAACATGTGCCCTTTCTATGGAAAGCTACGCA
TACCAAGGTAACGAGTTGAACATTTCTTGGCACCAAGCACCTATCGAATA
TAAACCAGAAAACATTCAAGTTGAAGGCTACAAATTGACCAGCATTGATG
CTTCCTCTGATGTGACAAATTATATGACTGGTGAGTTCTTCCAACTACTC
CACATATACTTACACGTGGAACGAACTGTCTCTTACTATATCTTTCGTTC
GTACGTTCCAAGTTCATTTCTGGTGATTATGACTTGGGGTACGTTCTGGT
TACCTGTCAACACTTATCCTGCTCGAGTTGGNtcgtcatcattttcaaaa
attttcttttgaACAATGTTGTACTTCGAATTATTTTCTTGGTTCATTTT
TGCTTGCAAAGTGTTATCAACAAATGGAGATGACGGAGTCGCTTCAAGTT
CTTTGACGAAGATTCTAAAAACATCATATGATAAAAGAGTCAAACCGTTT
GGCAGAAATGGGACACTCGATTTGGAAGTTCAAATATCAGTGGTAGCAGT
TGGTCCAATCAACGAAAAAGATTTTACCTTCAGATTGGATTATTACTTGC
GACAATGGTGGGTGGATGAGCGGCTTGTCTTCCCTGAAAAAGGGAAGATA
ACGTTTGGAGGAAATCCAAAAGATTTGATTTGGTTACCGGATTTGTTTGT
TCGGAATTCGAAAGAAGTCAAGATGCACCAATCATTTCAACAATCCATTC
GAACAACTATAAATCATGATGGTAACGTTTACATGAGCGCAAGaataaGT
TCAATTTGTTCGTGTAACATGAATCTACAGAATTATCCGATGGATCACCA
AACATGTGCCCTTTCTATGGAAAGCTACGCATACCAAGGTAACGAGTTGA
ACATTTCTTGGCACCAAGCACCTATCGAATATAAACCAGAAAACATTCAA
GTTGAAGGCTACAAATTGACCAGCATTGATGCTTCCTCTGATGTGACAAA
TTATATGACTGGTGAGTTCTTCCAACTACTCCACATATACTTACACGTGG
AACGAACTGTCTCTTACTATATCTTTCGTTCGTACGTTCCAAGTTCATTT
CTGGTGATTATGACTTGGGGTACGTTCTGGTTACCTGTCAACACTTATCC
TGCTCGAGTTGGNtcgtcatcattttcaaaaattttcttttgaACAATGT
TGTACTTCGAATTATTTTCTTGGTTCATTTTTGCTTGCAAAGTGTTATCA
ACAAATGGAGATGACGGAGTCGCTTCAAGTTCTTTGACGAAGATTCTAAA
AACATCATATGATAAAAGAGTCAAACCGTTTGGCAGAAATGGGACACTCG
ATTTGGAAGTTCAAATATCAGTGGTAGCAGTTGGTCCAATCAACGAAAAA
GATTTTACCTTCAGATTGGATTATTACTTGCGACAATGGTGGGTGGATGA
GCGGCTTGTCTTCCCTGAAAAAGGGAAGATAACGTTTGGAGGAAATCCAA
AAGATTTGATTTGGTTACCGGATTTGTTTGTTCGGAATTCGAAAGAAGTC
AAGATGCACCAATCATTTCAACAATCCATTCGAACAACTATAAATCATGA
TGGTAACGTTTACATGAGCGCAAGaataaGTTCAATTTGTTCGTGTAACA
TGAATCTACAGAATTATCCGATGGATCACCAAACATGTGCCCTTTCTATG
GAAAGCTACGCATACCAAGGTAACGAGTTGAACATTTCTTGGCACCAAGC
ACCTATCGAATATAAACCAGAAAACATTCAAGTTGAAGGCTACAAATTGA
CCAGCATTGATGCTTCCTCTGATGTGACAAATTATATGACTGGTGAGTTC
TTCCAACTACTCCACATATACTTACACGTGGAACGAACTGTCTCTTACTA
TATCTTTCGTTCGTACGTTCCAAGTTCATTTCTGGTGATTATGACTTGGG
GTACGTTCTGGTTACCTGTCAACACTTATCCTGCTCGAGTTGGNtcgtca
tcattttcaaaaattttcttttgaACAATGTTGTACTTCGAATTATTTTC
TTGGTTCATTTTTGCTTGCAAAGTGTTATCAACAAATGGAGATGACGGAG
TCGCTTCAAGTTCTTTGACGAAGATTCTAAAAACATCATATGATAAAAGA
GTCAAACCGTTTGGCAGAAATGGGACACTCGATTTGGAAGTTCAAATATC
AGTGGTAGCAGTTGGTCCAATCAACGAAAAAGATTTTACCTTCAGATTGG
ATTATTACTTGCGACAATGGTGGGTGGATGAGCGGCTTGTCTTCCCTGAA
AAAGGGAAGATAACGTTTGGAGGAAATCCAAAAGATTTGATTTGGTTACC
GGATTTGTTTGTTCGGAATTCGAAAGAAGTCAAGATGCACCAATCATTTC
AACAATCCATTCGAACAACTATAAATCATGATGGTAACGTTTACATGAGC
GCAAGaataaGTTCAATTTGTTCGTGTAACATGAATCTACAGAATTATCC
GATGGATCACCAAACATGTGCCCTTTCTATGGAAAGCTACGCATACCAAG
GTAACGAGTTGAACATTTCTTGGCACCAAGCACCTATCGAATATAAACCA
GAAAACATTCAAGTTGAAGGCTACAAATTGACCAGCATTGATGCTTCCTC
TGATGTGACAAATTATATGACTGGTGAGTTCTTCCAACTACTCCACATAT
ACTTACACGTGGAACGAACTGTCTCTTACTATATCTTTCGTTCGTACGTT
CCAAGTTCATTTCTGGTGATTATGACTTGGGGTACGTTCTGGTTACCTGT
CAACACTTATCCTGCTCGAGTTGGNtcgtcatcattttcaaaaattttct
tttgaACAATGTTGTACTTCGAATTATTTTCTTGGTTCATTTTTGCTTGC
AAAGTGTTATCAACAAATGGAGATGACGGAGTCGCTTCAAGTTCTTTGAC
GAAGATTCTAAAAACATCATATGATAAAAGAGTCAAACCGTTTGGCAGAA
ATGGGACACTCGATTTGGAAGTTCAAATATCAGTGGTAGCAGTTGGTCCA
ATCAACGAAAAAGATTTTACCTTCAGATTGGATTATTACTTGCGACAATG
GTGGGTGGATGAGCGGCTTGTCTTCCCTGAAAAAGGGAAGATAACGTTTG
GAGGAAATCCAAAAGATTTGATTTGGTTACCGGATTTGTTTGTTCGGAAT
TCGAAAGAAGTCAAGATGCACCAATCATTTCAACAATCCATTCGAACAAC
TATAAATCATGATGGTAACGTTTACATGAGCGCAAGaataaGTTCAATTT
GTTCGTGTAACATGAATCTACAGAATTATCCGATGGATCACCAAACATGT
GCCCTTTCTATGGAAAGCTACGCATACCAAGGTAACGAGTTGAACATTTC
TTGGCACCAAGCACCTATCGAATATAAACCAGAAAACATTCAAGTTGAAG
GCTACAAATTGACCAGCATTGATGCTTCCTCTGATGTGACAAATTATATG
ACTGGTGAGTTCTTCCAACTACTCCACATATACTTACACGTGGAACGAAC
TGTCTCTTACTATATCTTTCGTTCGTACGTTCCAAGTTCATTTCTGGTGA
TTATGACTTGGGGTACGTTCTGGTTACCTGTCAACACTTATCCTGCTCGA
GTTGGNtcgtcatcattttcaaaaattttcttttgaACAATGTTGTACTT
CGAATTATTTTCTTGGTTCATTTTTGCTTGCAAAGTGTTATCAACAAATG
GAGATGACGGAGTCGCTTCAAGTTCTTTGACGAAGATTCTAAAAACATCA
TATGATAAAAGAGTCAAACCGTTTGGCAGAAATGGGACACTCGATTTGGA
AGTTCAAATATCAGTGGTAGCAGTTGGTCCAATCAACGAAAAAGATTTTA
CCTTCAGATTGGATTATTACTTGCGACAATGGTGGGTGGATGAGCGGCTT
GTCTTCCCTGAAAAAGGGAAGATAACGTTTGGAGGAAATCCAAAAGATTT
GATTTGGTTACCGGATTTGTTTGTTCGGAATTCGAAAGAAGTCAAGATGC
ACCAATCATTTCAACAATCCATTCGAACAACTATAAATCATGATGGTAAC
GTTTACATGAGCGCAAGaataaGTTCAATTTGTTCGTGTAACATGAATCT
ACAGAATTATCCGATGGATCACCAAACATGTGCCCTTTCTATGGAAAGCT
ACGCATACCAAGGTAACGAGTTGAACATTTCTTGGCACCAAGCACCTATC
GAATATAAACCAGAAAACATTCAAGTTGAAGGCTACAAATTGACCAGCAT
TGATGCTTCCTCTGATGTGACAAATTATATGACTGGTGAGTTCTTCCAAC
TACTCCACATATACTTACACGTGGAACGAACTGTCTCTTACTATATCTTT
CGTTCGTACGTTCCAAGTTCATTTCTGGTGATTATGACTTGGGGTACGTT
CTGGTTACCTGTCAACACTTATCCTGCTCGAGTTGGNtcgtcatcatttt
caaaaattttcttttgaACAATGTTGTACTTCGAATTATTTTCTTGGTTC
ATTTTTGCTTGCAAAGTGTTATCAACAAATGGAGATGACGGAGTCGCTTC
AAGTTCTTTGACGAAGATTCTAAAAACATCATATGATAAAAGAGTCAAAC
CGTTTGGCAGAAATGGGACACTCGATTTGGAAGTTCAAATATCAGTGGTA
GCAGTTGGTCCAATCAACGAAAAAGATTTTACCTTCAGATTGGATTATTA
CTTGCGACAATGGTGGGTGGATGAGCGGCTTGTCTTCCCTGAAAAAGGGA
AGATAACGTTTGGAGGAAATCCAAAAGATTTGATTTGGTTACCGGATTTG
TTTGTTCGGAATTCGAAAGAAGTCAAGATGCACCAATCATTTCAACAATC
CATTCGAACAACTATAAATCATGATGGTAACGTTTACATGAGCGCAAGaa
taaGTTCAATTTGTTCGTGTAACATGAATCTACAGAATTATCCGATGGAT
CACCAAACATGTGCCCTTTCTATGGAAAGCTACGCATACCAAGGTAACGA
GTTGAACATTTCTTGGCACCAAGCACCTATCGAATATAAACCAGAAAACA
TTCAAGTTGAAGGCTACAAATTGACCAGCATTGATGCTTCCTCTGATGTG
ACAAATTATATGACTGGTGAGTTCTTCCAACTACTCCACATATACTTACA
CGTGGAACGAACTGTCTCTTACTATATCTTTCGTTCGTACGTTCCAAGTT
CATTTCTGGTGATTATGACTTGGGGTACGTTCTGGTTACCTGTCAACACT
TATCCTGCTCGAGTTGGNtcgtcatcattttcaaaaattttcttttgaAC
AATGTTGTACTTCGAATTATTTTCTTGGTTCATTTTTGCTTGCAAAGTGT
TATCAACAAATGGAGATGACGGAGTCGCTTCAAGTTCTTTGACGAAGATT
CTAAAAACATCATATGATAAAAGAGTCAAACCGTTTGGCAGAAATGGGAC
ACTCGATTTGGAAGTTCAAATATCAGTGGTAGCAGTTGGTCCAATCAACG
AAAAAGATTTTACCTTCAGATTGGATTATTACTTGCGACAATGGTGGGTG
GATGAGCGGCTTGTCTTCCCTGAAAAAGGGAAGATAACGTTTGGAGGAAA
TCCAAAAGATTTGATTTGGTTACCGGATTTGTTTGTTCGGAATTCGAAAG
AAGTCAAGATGCACCAATCATTTCAACAATCCATTCGAACAACTATAAAT
CATGATGGTAACGTTTACATGAGCGCAAGaataaGTTCAATTTGTTCGTG
TAACATGAATCTACAGAATTATCCGATGGATCACCAAACATGTGCCCTTT
CTATGGAAAGCTACGCATACCAAGGTAACGAGTTGAACATTTCTTGGCAC
CAAGCACCTATCGAATATAAACCAGAAAACATTCAAGTTGAAGGCTACAA
ATTGACCAGCATTGATGCTTCCTCTGATGTGACAAATTATATGACTGGTG
AGTTCTTCCAACTACTCCACATATACTTACACGTGGAACGAACTGTCTCT
TACTATATCTTTCGTTCGTACGTTCCAAGTTCATTTCTGGTGATTATGAC
TTGGGGTACGTTCTGGTTACCTGTCAACACTTATCCTGCTCGAGTTGGNt
cgtcatcattttcaaaaattttcttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014580XLOC_014580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025929-exon-sc0000555-1491911889:148574..148642TCONS_00025929-exon-sc0000555-1491911889:148574..148642Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:148574..148642TCONS_00025929-exon-sc0000555-1510915933:148574..148642Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:148574..148642TCONS_00025929-exon-sc0000555-1575043694:148574..148642Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:149102..149179TCONS_00025929-exon-sc0000555-1491911889:149102..149179Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:149102..149179TCONS_00025929-exon-sc0000555-1510915933:149102..149179Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:149102..149179TCONS_00025929-exon-sc0000555-1575043694:149102..149179Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:150274..150341TCONS_00025929-exon-sc0000555-1491911889:150274..150341Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:150274..150341TCONS_00025929-exon-sc0000555-1510915933:150274..150341Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:150274..150341TCONS_00025929-exon-sc0000555-1575043694:150274..150341Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:152240..152306TCONS_00025929-exon-sc0000555-1491911889:152240..152306Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:152240..152306TCONS_00025929-exon-sc0000555-1510915933:152240..152306Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:152240..152306TCONS_00025929-exon-sc0000555-1575043694:152240..152306Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:155709..155859TCONS_00025929-exon-sc0000555-1491911889:155709..155859Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:155709..155859TCONS_00025929-exon-sc0000555-1510915933:155709..155859Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:155709..155859TCONS_00025929-exon-sc0000555-1575043694:155709..155859Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:156892..156916TCONS_00025929-exon-sc0000555-1491911889:156892..156916Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:156892..156916TCONS_00025929-exon-sc0000555-1510915933:156892..156916Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:156892..156916TCONS_00025929-exon-sc0000555-1575043694:156892..156916Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:156983..157040TCONS_00025929-exon-sc0000555-1491911889:156983..157040Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:156983..157040TCONS_00025929-exon-sc0000555-1510915933:156983..157040Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:156983..157040TCONS_00025929-exon-sc0000555-1575043694:156983..157040Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:157352..157489TCONS_00025929-exon-sc0000555-1491911889:157352..157489Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:157352..157489TCONS_00025929-exon-sc0000555-1510915933:157352..157489Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:157352..157489TCONS_00025929-exon-sc0000555-1575043694:157352..157489Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1491911889:158923..159335TCONS_00025929-exon-sc0000555-1491911889:158923..159335Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1510915933:158923..159335TCONS_00025929-exon-sc0000555-1510915933:158923..159335Clytia hemisphaericaexon
TCONS_00025929-exon-sc0000555-1575043694:158923..159335TCONS_00025929-exon-sc0000555-1575043694:158923..159335Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025929-proteinTCONS_00025929-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:148574..159335 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.000133136 0.471017 0 0.794953 0.502375 0.786641 1.0931 0.646219 0.705287 0 0.432865 0.686074 0 0 0 0 0 0 0 0 0 0 0 1.81914 0.913872 0 0 0.210938 0.952976
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
BLAST of TCONS_00025929 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 4.340e-38
Identity = 77/235 (32.77%), Postives = 127/235 (54.04%), Query Frame = 3
Query:  111 TSYDKRVKPFGRNGTLDLEVQISVVAVGPINEKDFTFRLDYYLRQWWVDERLVFPEKGKITFGGNPK--DLIWLPDLFVRNSKEVKMHQSFQQSIRTTINHDGNVYMSARISSICSCNMNLQNYPMDHQTCALSMESYAYQGNELNISWH-QAPIEYKPENIQVEGYKLT-SIDASSDVTNYMTGEFFQLLHIYLHVERTVSYYIFRSYVPSSFLVIMTWGTFWLPVNTYPARVG 803
            + YD R++P  +   +++   I + + G I E    +R++ +LRQ W D RL + E    +   +P   D IW PDLF  N K    H+    +    I  +GNV  S R++   SC M+L+N+PMD QTC + +ES+ Y  N+L   W  +AP++   E + +  + L    D      +Y TG+ F  + +  H+ER + YY+ + Y+PS  +VI++W +FW+ ++  PARV 
Sbjct:   55 SGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVA-EGLTLPQFLLKEEKDLRYCTKHYNTGK-FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVA 287          
The following BLAST results are available for this feature:
BLAST of TCONS_00025929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRA34.340e-3832.77Glycine receptor subunit alpha-3 OS=Homo sapiens G... [more]
back to top