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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027361 ID=TCONS_00027361|Name=TCONS_00027361|organism=Clytia hemisphaerica|type=transcript|length=3478bpRun BLAST on NCBI protein sequence of dishevelled >TCONS_00027361-protein ID=TCONS_00027361-protein|Name=dishevelled|organism=Clytia hemisphaerica|type=polypeptide|length=721bp QFSSLPNAFSSTFRVVKEEIIDDDAPLPCFNGRVVSWVVPPEDGSCDGQSRun BLAST on NCBI transcript from alignment at sc0000619:32358..47160+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027361 ID=TCONS_00027361|Name=TCONS_00027361|organism=Clytia hemisphaerica|type=transcript|length=14803bp|location=Sequence derived from alignment at sc0000619:32358..47160+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000619:32358..47160+ >TCONS_00027361 ID=TCONS_00027361|Name=TCONS_00027361|organism=Clytia hemisphaerica|type=CDS|length=32490bp|location=Sequence derived from alignment at sc0000619:32358..47160+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027361 vs. Swiss-Prot (Human)
Match: DVL3 (Segment polarity protein dishevelled homolog DVL-3 OS=Homo sapiens GN=DVL3 PE=1 SV=2) HSP 1 Score: 395.971 bits (1016), Expect = 7.274e-122 Identity = 255/482 (52.90%), Postives = 317/482 (65.77%), Query Frame = 1
Query: 37 FRVVKEEIIDDDAPLPCFNGRVVSWVVPPEDGSCDGQSQHSGDGIFVPV---QSSNTNISRSSTMR------SKERV-QDSDAESIVXXXXXXXXXXXKYESDADXXXXXXXXXXXNYDQYDSAS-MMSSDLETTSFVDSEEESQMS-----SATESSRYVGGNKXXXXXXXXXXXXXXCSSFSTITESTMSLNIITVTLNMDKINFLGISIVGQASKKGDGGIYVGSVMKGGAVDADGRVEPGDMILAVGDVNFENMSNDDAVRVLRECVHKPGPIQLTVAKCWDPNPKGYFTVPKDDVTRPIDPAAWVQHSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPEADRYLEHXXXXXXXXXXXXXXIVKVMNQENSGLTVRDRMWLKITIPNAFIGSDLVDWLFANVEGFQDRREARKYASKLLKANLIRHTVNKVTFSEQCYYVFGDLSDRRRGMHMQDIEG----SEEDTLAPLASTSA 1422
F VVKEEI DD+A LPCFNGRVVSW+V E D + + +P ++ SR + S+E + D++ +S+VS + R R E R YDS+S +MSS+LETTSF DS+E+ S + S+ + +RRRR+Q++ R+ER SSFS+IT+STMSLNIITVTLNM+K NFLGISIVGQ++++GDGGIY+GS+MKGGAV ADGR+EPGDM+L V ++NFENMSNDDAVRVLRE VHKPGPI LTVAKCWDP+P+G FT+P+ + RPIDPAAWV H+ AM G + +++S SS E L+I +DM IVK M SGL VRDRMWLKITIPNAFIGSD+VDWL+ NVEGF DRREARKYAS LLKA IRHTVNK+TFSEQCYY+FGDL + + D +G S++DTLAPL A
Sbjct: 53 FGVVKEEISDDNAKLPCFNGRVVSWLVSAEGSHPDPAPFCADNPSELPPPMERTGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQRERPRRRDGPEHATRLNGTAKGERRREPGGYDSSSTLMSSELETTSFFDSDEDDSTSRFSSSTEQSSASRLMRRHKRRRRKQKVSRIERSSSFSSITDSTMSLNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNEINFENMSNDDAVRVLREIVHKPGPITLTVAKCWDPSPRGCFTLPRSEPIRPIDPAAWVSHTAAMTGTFPAYGMSPSLSTITSTSSSITSSIPD-----TERLDDFHLSIHSDMAAIVKAMASPESGLEVRDRMWLKITIPNAFIGSDVVDWLYHNVEGFTDRREARKYASNLLKAGFIRHTVNKITFSEQCYYIFGDLCGNMANLSLHDHDGSSGASDQDTLAPLPHPGA 529 The following BLAST results are available for this feature:
BLAST of TCONS_00027361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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