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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027467 ID=TCONS_00027467|Name=TCONS_00027467|organism=Clytia hemisphaerica|type=transcript|length=1467bpRun BLAST on NCBI protein sequence of TCONS_00027467-protein >TCONS_00027467-protein ID=TCONS_00027467-protein|Name=TCONS_00027467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp MADYYCFTYRYLGITQYTYEIAPVFLIMEKFIWELINQKVGFKDGDGMFFRun BLAST on NCBI transcript from alignment at sc0000628:56935..76218+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027467 ID=TCONS_00027467|Name=TCONS_00027467|organism=Clytia hemisphaerica|type=transcript|length=19284bp|location=Sequence derived from alignment at sc0000628:56935..76218+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000628:56935..76218+ >TCONS_00027467 ID=TCONS_00027467|Name=TCONS_00027467|organism=Clytia hemisphaerica|type=CDS|length=15444bp|location=Sequence derived from alignment at sc0000628:56935..76218+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027467 vs. Swiss-Prot (Human)
Match: DCE1 (Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1) HSP 1 Score: 395.201 bits (1014), Expect = 1.376e-130 Identity = 203/383 (53.00%), Postives = 272/383 (71.02%), Query Frame = 2
Query: 194 YTYEIAPVFLIMEKFIWELINQKVGF--KDGDGMFFPGGSLCNIAAINLARFKCCPNIKEDGVFGMKKLIIYTSEESHYSITKGAALCGIGTKNVVKIRTNDVTGKMIAEDLDEKIQQSIAKGEQPMMXXXXXXXXXXXXYDPINQIADVTDKYNIWLHVDGAWGGPVLLSEKYKKFMDGCHRIDSLTWDPHKMMGLLQQCSFLVVKEKGLLQQCNSANASYLFQKDKQSYDVSWDSGDKTFVCGRRNDILKLWMYFKAKGLKGVENDINKCFENSRYLTSKIKERENFSLL--REPECTNVCFRYTPPRIARMPEGAEREKELTKVAPEIKKKMTEKGSMMVAYQPLKEHVNFFRMINSNPGQTFSDMDFILDEIERLGKDL 1330
+TYEIAPVF++ME+ + + + VG+ KDGDG+F PGG++ N+ +I AR+K P +K G+ + KL+++TSE+SHYSI K A G GT NV+ I+ N+ GK+I D + KI ++ KG P V ATAGTTV GA+DPI +IAD+ +KYN+WLHVD AWGG +L+S K++ ++G R +S+TW+PHKMMG+L QCS ++VKEKG+LQ CN A YLFQ DKQ YDVS+D+GDK CGR DI K W+ +KAKG G EN INKC E + YL +KIK RE F ++ EPE TNVCF Y P + +P+ +R ++L KVAP+IK M E G+ MV YQP + NFFRM+ SNP T SD+DF+++EIERLG+DL
Sbjct: 214 FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQ-YDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594 The following BLAST results are available for this feature:
BLAST of TCONS_00027467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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