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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027917 ID=TCONS_00027917|Name=TCONS_00027917|organism=Clytia hemisphaerica|type=transcript|length=2662bpRun BLAST on NCBI protein sequence of TCONS_00027917-protein >TCONS_00027917-protein ID=TCONS_00027917-protein|Name=TCONS_00027917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp ADTVSRRCFANQTWEKVNYNLHCRKLPSELVTKHKQEMLLQYGLYTQEEIRun BLAST on NCBI transcript from alignment at sc0000657:91074..101372+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027917 ID=TCONS_00027917|Name=TCONS_00027917|organism=Clytia hemisphaerica|type=transcript|length=10299bp|location=Sequence derived from alignment at sc0000657:91074..101372+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000657:91074..101372+ >TCONS_00027917 ID=TCONS_00027917|Name=TCONS_00027917|organism=Clytia hemisphaerica|type=CDS|length=13710bp|location=Sequence derived from alignment at sc0000657:91074..101372+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027917 vs. Swiss-Prot (Human)
Match: CRFR1 (Corticotropin-releasing factor receptor 1 OS=Homo sapiens GN=CRHR1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.312e-22 Identity = 91/391 (23.27%), Postives = 161/391 (41.18%), Query Frame = 3
Query: 18 RRCFANQTWE-KVNYNLHCRKLPSELVTKHKQEMLLQYGLYTQEEIDAENELIRHTKLQTDIKYYLRCFDLSICAIGFLVLL------------------VFIPWDNS-----------RIMLHRNLIISFLFDDLINILIQETFK---NPNTVKECSILMVVQKFFFLAQICWMFNEG-XXXXXXXXXXXIEKTYLWIYLLFGWGFPLIWTFGIYFPIL--WTYPPLD-DFAVCWYA-FPGYKYNYIIYSPAFVLLLLNIGIMAYLMWMIWSKLKASKTGDLKTARKAARGFFICMFLLGGGYVFTLYGPANN----IGFMYFRAIVQATQGIMVCILHVFLSKEVQEAVKTKINRFLAQHNIELQCMNKKKNSNGPS--TKHSNVNSTS 1058
R C AN +W +VNY+ C QE ++ E + H + I Y C L + F++ L V PW + R ++H NLI +F+ + ++Q T + + V C ++ +F + WMF EG + ++ W+++ GWG P FPI+ W L D CW+ PG +YI P ++LL+N + ++ ++ +KL+AS T + RKA + + + LLG Y+ P + + F+YF + +++ QG V + + FL+ EV+ A++ + +R+ +H+I + P+ + HS ST+
Sbjct: 85 RECLANGSWAARVNYS-EC-----------------------QEILNEEKKSKVHYHVAVIINYLGHCISLVALLVAFVLFLRLRPGCTHWGDQADGALEVGAPWSGAPFQVRRSIRCLRNIIHWNLISAFILRNATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTYSTDRLRKWMFICIGWGVP--------FPIIVAWAIGKLYYDNEKCWFGKRPGVYTDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGEDEVSRVVFIYFNSFLESFQGFFVSVFYCFLNSEVRSAIRKRWHRWQDKHSIRARVARAMSIPTSPTRVSFHSIKQSTA 443 The following BLAST results are available for this feature:
BLAST of TCONS_00027917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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