|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027985 ID=TCONS_00027985|Name=TCONS_00027985|organism=Clytia hemisphaerica|type=transcript|length=2195bp
ctcaaatcacCTTTGATCAAACAGAGACGTCTGTTAGATTAAGGAAGTGG
ATTATCTCAGGTACGCTGAAATTGTCAACAAAGAAAATGGCGTCGAAAGG
CCAAGAAATGAAAGATGCAGTCAAAAGTGCCTCATACAATATGGTTTTAC
AGGTTATCTTTCGACTTTCTACATTTTCAATGAATGCTATTATGCTTCGT
TATCTATCCAGGGAAGTTTTGGGTGTAATGAATGTTCGGCTAATGTTACT
TTACAGCACTATGTTGTTCATTTCCCGAGAAGCTTTTCGAAAAGCTTGTT
TGAGTCAACAGAGCATTAAGGAGAATGTTGAGCAAATTAAACTGAAGCAA
ATGATTAATTTGACCTGGATTTGCAGTAttgttggtttgttttcttcatt
tgttttgatttttatctggACAAGCTGGTTACCACAACCAAAAGACGACC
TTATCTGGCAATATCAAATGGCCACCATTTTAGTTGCTGCAAGCTGTAGT
TTTGAACTTGCAGTAGAACCCTTTTGGATACTGGCCCAAAGAAACTCATT
ACTTTCATTAAAAGTTATGTTTGAAGGAGTTTATCTAGCTGTTAGATGTT
TTATATCGAcatttctggttgttttctttcctgACAAGGCACTTGTAATG
TATGGTGTAACTTTTGTTTTAGCAGCCATTGTGTATTCTTTATGCTATGC
TATCTATTTCtggaaatatttaacaaaagaTGATTCAAAGAAGACCAAAG
AGCTCTCACAATTCAAGCAGTTTGCAGACTTTTTGCCTAACATTAGATCA
AAGCCTCTTTTTCATCAAGATTATGTGaaccttgttacaagtttttaCAA
ACAATCAATGCTAAAACAGTTTCTAACAGAAGGGGAGCGTTACATAATGA
CAATATTTGGTATATTGACATTTAGTGAACAAGGAGTTTATGATGTTATA
AACAATCTGGGATCGCTTGCTGCTAGATTCATATTCATGCCAATTGAGGA
AACATATTACacttacttttcaaaaatattgttaCGTGGAATAAGAGCCA
ATGAgcagaaaaaagaaagtttggatgAAGCTGCAAGATCTTTATTTCTT
GTTTTAAAGTTTGTCTCATTAGTTGGGAtgataattttggtttttggtta
CAGCTACTCGTATCTTCTTTTGGATTTATACGGAGGAAAAATCCTCAGTG
AAAATGAAGGTCCATCTTTAATGAAGGCATATTGTTTGTATGTATTCATC
ATTGCGATTAATGGAATTACAGAATGCTTTATGTTTGCTACAATGAGTAA
AGAAGAAGTGGACAAATATAATTATAAGATGTTGATGTTTTCAGTCATAT
TTCTGAGTGCTTCTCTTCTGCTTACAAGATATATTGGTTCTATTGGATTC
ATATTTGCTAATTGTTTGAATATGTTCTTACGAATAATACAAAgctCACT
TTACATCAACAAGTATTTCCAAGAGACTGAATATCGACCCTTGTCAGCTA
TACATCCATCTTTCGCTTCGTTGTTAACCCTTTTAATTTCATTTGTCGTA
ATGGTCATATCAGAGGCAATATTTTGTTGCAATTATGGTCTTTTATATCA
ATTATGTCATGTTGCTGTTGGAGGAGTTTGTTTACTTGTTGTCTTAGGTA
GTATTTATTTTACTGAACATAAATTTGTAGATTATTTAAAATCATTGATC
AAACAGAAACAGCATTAAAATGATGTTAAATATATATGAAGCTTGAATTC
TTTCTGCGTAGCATGTTTTGATAAACTATGCTTTCTAATAATTGTTACTT
TTGGCTACCTAATAGGCGGGGGGGGGGttagaaagatttttgaaaaggac
ACTTAtgcagcagaattagggcaaaagagggaaatttcaaaaacatttac
aaaaaattgattAGCAGGGGACGCTTATTAGGCACCCAAGAGTAATTATT
AGTACATCTAATAGTATTCTATATTAAGAAGTATTTATTTGTTATGTATC
TTGGTATTTGGTATATGTATCAGCTTGTAAGAATTTTAAGACAGAAAATA
GATtgactttatattttttccatATTACAGACTGTCTGATCACTAACTCA
GAGGGCCTTATTGCATATGATCACTTTTAGGTAATTTAAAATGATTCCAA
TTAAAATCCACGTTTCCAGTAAGGTATTCGAAGATTAGATTACAT Run BLAST on NCBI protein sequence of TCONS_00027985-protein >TCONS_00027985-protein ID=TCONS_00027985-protein|Name=TCONS_00027985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp
QITFDQTETSVRLRKWIISGTLKLSTKKMASKGQEMKDAVKSASYNMVLQ
VIFRLSTFSMNAIMLRYLSREVLGVMNVRLMLLYSTMLFISREAFRKACL
SQQSIKENVEQIKLKQMINLTWICSIVGLFSSFVLIFIWTSWLPQPKDDL
IWQYQMATILVAASCSFELAVEPFWILAQRNSLLSLKVMFEGVYLAVRCF
ISTFLVVFFPDKALVMYGVTFVLAAIVYSLCYAIYFWKYLTKDDSKKTKE
LSQFKQFADFLPNIRSKPLFHQDYVNLVTSFYKQSMLKQFLTEGERYIMT
IFGILTFSEQGVYDVINNLGSLAARFIFMPIEETYYTYFSKILLRGIRAN
EQKKESLDEAARSLFLVLKFVSLVGMIILVFGYSYSYLLLDLYGGKILSE
NEGPSLMKAYCLYVFIIAINGITECFMFATMSKEEVDKYNYKMLMFSVIF
LSASLLLTRYIGSIGFIFANCLNMFLRIIQSSLYINKYFQETEYRPLSAI
HPSFASLLTLLISFVVMVISEAIFCCNYGLLYQLCHVAVGGVCLLVVLGS
IYFTEHKFVDYLKSLIKQKQH Run BLAST on NCBI transcript from alignment at sc0000660:54249..58265- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027985 ID=TCONS_00027985|Name=TCONS_00027985|organism=Clytia hemisphaerica|type=transcript|length=4017bp|location=Sequence derived from alignment at sc0000660:54249..58265- (Clytia hemisphaerica)
CTCAAATCACCTTTGATCAAACAGAGACGTCTGTTAGATTAAGGAAGTGG
ATTATCTCAGGTACGCTGAAATTGTCAACAAAGAAAATGGCGTCGAAAGG
CCAAGAAATGAAAGATGCAGTCAAAAGTGCCTCATACAATATGGTTTTAC
AGGTTATCTTTCGACTTTCTACATTTTCAATGAATGCTATTATGCTTCGT
TATCTATCCAGGGAAGTTTTGGGTGTAATGAATGTTCGGCTAATGTTACT
TTACAGCACTATGTTGTTCATTTCCCGAGAAGCTTTTCGAAAAGCTTGTT
TGAGTCAACAGAGCATTAAGGAGAATGTTGAGCAAATTAAACTGAAGCAA
ATGATTAATTTGACCTGGATTTGCAGTATTGTTGGTTTGTTTTCTTCATT
TGTTTTGATTTTTATCTGGACAAGCTGGTTACCACAACCAAAAGACGACC
TTATCTGGCAATATCAAATGGCCACCATTTTAGTTGCTGCAAGCTGTAGT
TTTGAACTTGCAGTAGAACCCTTTTGGATACTGGCCCAAAGAAACTCATT
ACTTTCATTAAAAGTTATGTTTGAAGGAGTTTATCTAGCTGTTAGATGTT
TTATATCGACATTTCTGGTTGTTTTCTTTCCTGACAAGGCACTTGTAATG
TATGGTGTAACTTTTGTTTTAGCAGCCATTGTGTATTCTTTATGCTATGC
TATCTATTTCTGGAAATATTTAACAAAAGATGATTCAAAGAAGACCAAAG
AGCTCTCACAATTCAAGCAGTTTGCAGACTTTTTGCCTAACATTAGATCA
AAGCCTCTTTTTCATCAAGATTATGTGAACCTTGTTACAAGTTTTTACAA
ACAATCAATGCTAAAACAGTTTCTAACAGAAGGGGAGCGTTACATAATGA
CAATATTTGGTATATTGACATTTAGTGAACAAGGAGTTTATGATGTTATA
AACAATCTGGGATCGCTTGCTGCTAGATTCATATTCATGCCAATTGAGGA
AACATATTACACTTACTTTTCAAAAATATTGTTACGTGGAATAAGAGCCA
ATGAGCAGAAAAAAGAAAGTTTGGATGAAGCTGCAAGATCTTTATTTCTT
GTTTTAAAGTTTGTCTCATTAGTTGGGATGATAATTTTGGTTTTTGGTTA
CAGCTACTCGTATCTTCTTTTGGATTTATACGGAGGAAAAATCCTCAGTG
AAAATGAAGGTTTGTTAATTAACTTGGTCTAATGTGGCTCCCCTTTTTTG
ATTCTTTCACTCTCCTTAAAGTTGGAAGGGTTGTAATAGCTGAATACTAC
CGTAAGTTGGTCTAATGTCAACATCTCTCTTCTAATTTTGTCACCCTTCT
TTAGAGATAAGAATAATAGAAAGGTCAGAATTGCTGATTGAAACAAATAG
TATTATAGGGGGAAATGTGCTCGTTGTTTTTTAGGTTGCTTGATTTTTTT
AGTCAGAGTACTTGTTATACATTTTTGGAAAGCTAAAGGGTAGGGGAATC
AAAATAACTTGGGTACCAATTTTTTTTTTGACACTTTGGTGTGATTTTTG
GATAAATATGACGGTCTCAGGTAAAAATCATAGGGTGAAAAATTAATGAA
AATTTTAGCTTGAGAAAATAGAGATCTGTTGTATATTCTTAGAAAGCTAT
CAAAAAATTAAGATTAGACATATTGTATAGGTGATTTCTGTACCTAACTC
GAGATATTAACTCTTAAAAACAGTGTTTTTCAGCCAGAAACAGCTATTTT
GTCCAGTTGAGACAAAATAGCTCGAGTAAAGTAATTTAGTATGCAGAACT
GAGTCAAAAGGTTGTTGTTTTATCCTAAACAACTACTTTAATGGGATTTC
GCAGATTTGGGTGTCATCCGCGAAAATCTGCAAAATTAAGTCCGAAATTT
GGAAGGGCCTGATCTGCAAAATATTTCTAAACAAAACTCAAAATATGTCA
AATAAATACTATTTGAATGATTACTTGCATCAAAGAGGCGCAAATAATGT
GTATTTCATGAACCAACATGCATGATTTGACAGTAAAAGTCATAAAATCG
TGAAAATATTGCTATCCAATAGTGCCACCCGCAAAATTAATTCCTCGCGA
AATTTTTGAATTTCGCGGATAGGCTTAACCGCGAAATTTAATCCCCGCAA
AAGTTTATCCCATTAAAGTTTAAAGTACATATCAGTGATGAGAATCTTTT
CTATTTTTATTTTAAAAAAGAAGCTGGAGAATAAATCTAATTTCAATTGA
TACCGACAATTGGGGTTACTATCATAAGCATGGGGTAACTTTCATCACTT
CCAAACAGCAGACTGTTCTAGTTTGCGATTTGTCAATTTTGCTAGAATTT
AAATTAGTCATGACATGACTTTTGAATTTTATAAATTGAAAACTAGAAAA
TGTTTTGGTCTGCAAGTGATGAAAGTTAACCCTCACTTATAAAAGTAACC
CCAATTGGCGAAAATTCTGTCCTTTTTATCTTTTCTAATTATTTTTATCT
TTAAAATGGGGTGGCCGAATTAGAAGAAGGTGGTCAACATTATACCAAAG
TATGTTTATCCCTCTCTTTCTGCATATTTTTCAAAAATTATTTTCTGGTT
ATAGGTCCATCTTTAATGAAGGCATATTGTTTGTATGTATTCATCATTGC
GATTAATGGAATTACAGAATGCTTTATGTTTGCTACAATGAGTAAAGAAG
AAGTGGACAAATATAATTATAAGATGTTGATGTTTTCAGTCATATTTCTG
AGTGCTTCTCTTCTGCTTACAAGATATATTGGTTCTATTGGATTCATATT
TGCTAATTGTTTGAATATGTTCTTACGAATAATACAAAGGTAATTTCGAT
TTTTTTTATCTAATCTGAAATTCTTTTACCAAAGAAATGATATAGTATGA
CATTGTCTGTTCAAAACTTGTCATCTGTTTAAAATAAATGGTTTGAATGT
TCAGTTTAATCCTGGAAAGAATCTAATTAGGGTATTATAATTGGTTTTTA
AAGTAAAGAATTAGTATACAGTAAGGCAGTGTGTGAATTTTAAATTGTTT
TTTTGTCCAATCTAAAATGACAAACCAAGAGAATAGATACGTTTTATTAC
ATTTATTTTCCAGAATCGAAAGACACAAAACAATTTTCAATTGTTTTATT
TTTCACTTTTTAGCTCACTTTACATCAACAAGTATTTCCAAGAGACTGAA
TATCGACCCTTGTCAGCTATACATCCATCTTTCGCTTCGTTGTTAACCCT
TTTAATTTCATTTGTCGTAATGGTCATATCAGAGGCAATATTTTGTTGCA
ATTATGGTCTTTTATATCAATTATGTCATGTTGCTGTTGGAGGAGTTTGT
TTACTTGTTGTCTTAGGTAGTATTTATTTTACTGAACATAAATTTGTAGA
TTATTTAAAATCATTGATCAAACAGAAACAGCATTAAAGTATAGAAATAT
AGAATATTTTATAATCTGATATTATAATAATCATTTATAGTTTTGATAAG
AGATTGATTCTACTGTTTTTTAGGACGTGATACTTTTTCAGATGATGTTA
AATATATATGAAGCTTGAATTCTTTCTGCGTAGCATGTTTTGATAAACTA
TGCTTTCTAATAATTGTTACTTTTGGCTACCTAATAGGCGGGGGGGGGGT
TAGAAAGATTTTTGAAAAGGACACTTATGCAGCAGAATTAGGGCAAAAGA
GGGAAATTTCAAAAACATTTACAAAAAATTGATTAGCAGGGGACGCTTAT
TAGGCACCCAAGAGTAATTATTAGTACATCTAATAGTATTCTATATTAAG
AAGTATTTATTTGTTATGTATCTTGGTATTTGGTATATGTATCAGCTTGT
AAGAATTTTAAGACAGAAAATAGATTGACTTTATATTTTTTCCATATTAC
AGACTGTCTGATCACTAACTCAGAGGGCCTTATTGCATATGATCACTTTT
AGGTAATTTAAAATGATTCCAATTAAAATCCACGTTTCCAGTAAGGTATT
CGAAGATTAGATTACAT Coding sequence (CDS) from alignment at sc0000660:54249..58265- >TCONS_00027985 ID=TCONS_00027985|Name=TCONS_00027985|organism=Clytia hemisphaerica|type=CDS|length=5148bp|location=Sequence derived from alignment at sc0000660:54249..58265- (Clytia hemisphaerica)
CTCACTTTACATCAACAAGTATTTCCAAGAGACTGAATATCGACCCTTGT
CAGCTATACATCCATCTTTCGCTTCGTTGTTAACCCTTTTAATTTCATTT
GTCGTAATGGTCATATCAGAGGCAATATTTTGTTGCAATTATGGTCTTTT
ATATCAATTATGTCATGTTGCTGTTGGAGGAGTTTGTTTACTTGTTGTCT
TAGGTAGTATTTATTTTACTGAACATAAATTTGTAGATTATTTAAAATCA
TTGATCAAACAGAAACAGCATTAAGTCCATCTTTAATGAAGGCATATTGT
TTGTATGTATTCATCATTGCGATTAATGGAATTACAGAATGCTTTATGTT
TGCTACAATGAGTAAAGAAGAAGTGGACAAATATAATTATAAGATGTTGA
TGTTTTCAGTCATATTTCTGAGTGCTTCTCTTCTGCTTACAAGATATATT
GGTTCTATTGGATTCATATTTGCTAATTGTTTGAATATGTTCTTACGAAT
AATACAAAGCAAATCACCTTTGATCAAACAGAGACGTCTGTTAGATTAAG
GAAGTGGATTATCTCAGGTACGCTGAAATTGTCAACAAAGAAAATGGCGT
CGAAAGGCCAAGAAATGAAAGATGCAGTCAAAAGTGCCTCATACAATATG
GTTTTACAGGTTATCTTTCGACTTTCTACATTTTCAATGAATGCTATTAT
GCTTCGTTATCTATCCAGGGAAGTTTTGGGTGTAATGAATGTTCGGCTAA
TGTTACTTTACAGCACTATGTTGTTCATTTCCCGAGAAGCTTTTCGAAAA
GCTTGTTTGAGTCAACAGAGCATTAAGGAGAATGTTGAGCAAATTAAACT
GAAGCAAATGATTAATTTGACCTGGATTTGCAGTATTGTTGGTTTGTTTT
CTTCATTTGTTTTGATTTTTATCTGGACAAGCTGGTTACCACAACCAAAA
GACGACCTTATCTGGCAATATCAAATGGCCACCATTTTAGTTGCTGCAAG
CTGTAGTTTTGAACTTGCAGTAGAACCCTTTTGGATACTGGCCCAAAGAA
ACTCATTACTTTCATTAAAAGTTATGTTTGAAGGAGTTTATCTAGCTGTT
AGATGTTTTATATCGACATTTCTGGTTGTTTTCTTTCCTGACAAGGCACT
TGTAATGTATGGTGTAACTTTTGTTTTAGCAGCCATTGTGTATTCTTTAT
GCTATGCTATCTATTTCTGGAAATATTTAACAAAAGATGATTCAAAGAAG
ACCAAAGAGCTCTCACAATTCAAGCAGTTTGCAGACTTTTTGCCTAACAT
TAGATCAAAGCCTCTTTTTCATCAAGATTATGTGAACCTTGTTACAAGTT
TTTACAAACAATCAATGCTAAAACAGTTTCTAACAGAAGGGGAGCGTTAC
ATAATGACAATATTTGGTATATTGACATTTAGTGAACAAGGAGTTTATGA
TGTTATAAACAATCTGGGATCGCTTGCTGCTAGATTCATATTCATGCCAA
TTGAGGAAACATATTACACTTACTTTTCAAAAATATTGTTACGTGGAATA
AGAGCCAATGAGCAGAAAAAAGAAAGTTTGGATGAAGCTGCAAGATCTTT
ATTTCTTGTTTTAAAGTTTGTCTCATTAGTTGGGATGATAATTTTGGTTT
TTGGTTACAGCTACTCGTATCTTCTTTTGGATTTATACGGAGGAAAAATC
CTCAGTGAAAATGAAGCTCACTTTACATCAACAAGTATTTCCAAGAGACT
GAATATCGACCCTTGTCAGCTATACATCCATCTTTCGCTTCGTTGTTAAC
CCTTTTAATTTCATTTGTCGTAATGGTCATATCAGAGGCAATATTTTGTT
GCAATTATGGTCTTTTATATCAATTATGTCATGTTGCTGTTGGAGGAGTT
TGTTTACTTGTTGTCTTAGGTAGTATTTATTTTACTGAACATAAATTTGT
AGATTATTTAAAATCATTGATCAAACAGAAACAGCATTAAGTCCATCTTT
AATGAAGGCATATTGTTTGTATGTATTCATCATTGCGATTAATGGAATTA
CAGAATGCTTTATGTTTGCTACAATGAGTAAAGAAGAAGTGGACAAATAT
AATTATAAGATGTTGATGTTTTCAGTCATATTTCTGAGTGCTTCTCTTCT
GCTTACAAGATATATTGGTTCTATTGGATTCATATTTGCTAATTGTTTGA
ATATGTTCTTACGAATAATACAAAGCAAATCACCTTTGATCAAACAGAGA
CGTCTGTTAGATTAAGGAAGTGGATTATCTCAGGTACGCTGAAATTGTCA
ACAAAGAAAATGGCGTCGAAAGGCCAAGAAATGAAAGATGCAGTCAAAAG
TGCCTCATACAATATGGTTTTACAGGTTATCTTTCGACTTTCTACATTTT
CAATGAATGCTATTATGCTTCGTTATCTATCCAGGGAAGTTTTGGGTGTA
ATGAATGTTCGGCTAATGTTACTTTACAGCACTATGTTGTTCATTTCCCG
AGAAGCTTTTCGAAAAGCTTGTTTGAGTCAACAGAGCATTAAGGAGAATG
TTGAGCAAATTAAACTGAAGCAAATGATTAATTTGACCTGGATTTGCAGT
ATTGTTGGTTTGTTTTCTTCATTTGTTTTGATTTTTATCTGGACAAGCTG
GTTACCACAACCAAAAGACGACCTTATCTGGCAATATCAAATGGCCACCA
TTTTAGTTGCTGCAAGCTGTAGTTTTGAACTTGCAGTAGAACCCTTTTGG
ATACTGGCCCAAAGAAACTCATTACTTTCATTAAAAGTTATGTTTGAAGG
AGTTTATCTAGCTGTTAGATGTTTTATATCGACATTTCTGGTTGTTTTCT
TTCCTGACAAGGCACTTGTAATGTATGGTGTAACTTTTGTTTTAGCAGCC
ATTGTGTATTCTTTATGCTATGCTATCTATTTCTGGAAATATTTAACAAA
AGATGATTCAAAGAAGACCAAAGAGCTCTCACAATTCAAGCAGTTTGCAG
ACTTTTTGCCTAACATTAGATCAAAGCCTCTTTTTCATCAAGATTATGTG
AACCTTGTTACAAGTTTTTACAAACAATCAATGCTAAAACAGTTTCTAAC
AGAAGGGGAGCGTTACATAATGACAATATTTGGTATATTGACATTTAGTG
AACAAGGAGTTTATGATGTTATAAACAATCTGGGATCGCTTGCTGCTAGA
TTCATATTCATGCCAATTGAGGAAACATATTACACTTACTTTTCAAAAAT
ATTGTTACGTGGAATAAGAGCCAATGAGCAGAAAAAAGAAAGTTTGGATG
AAGCTGCAAGATCTTTATTTCTTGTTTTAAAGTTTGTCTCATTAGTTGGG
ATGATAATTTTGGTTTTTGGTTACAGCTACTCGTATCTTCTTTTGGATTT
ATACGGAGGAAAAATCCTCAGTGAAAATGAAGCTCACTTTACATCAACAA
GTATTTCCAAGAGACTGAATATCGACCCTTGTCAGCTATACATCCATCTT
TCGCTTCGTTGTTAACCCTTTTAATTTCATTTGTCGTAATGGTCATATCA
GAGGCAATATTTTGTTGCAATTATGGTCTTTTATATCAATTATGTCATGT
TGCTGTTGGAGGAGTTTGTTTACTTGTTGTCTTAGGTAGTATTTATTTTA
CTGAACATAAATTTGTAGATTATTTAAAATCATTGATCAAACAGAAACAG
CATTAAGTCCATCTTTAATGAAGGCATATTGTTTGTATGTATTCATCATT
GCGATTAATGGAATTACAGAATGCTTTATGTTTGCTACAATGAGTAAAGA
AGAAGTGGACAAATATAATTATAAGATGTTGATGTTTTCAGTCATATTTC
TGAGTGCTTCTCTTCTGCTTACAAGATATATTGGTTCTATTGGATTCATA
TTTGCTAATTGTTTGAATATGTTCTTACGAATAATACAAAGCAAATCACC
TTTGATCAAACAGAGACGTCTGTTAGATTAAGGAAGTGGATTATCTCAGG
TACGCTGAAATTGTCAACAAAGAAAATGGCGTCGAAAGGCCAAGAAATGA
AAGATGCAGTCAAAAGTGCCTCATACAATATGGTTTTACAGGTTATCTTT
CGACTTTCTACATTTTCAATGAATGCTATTATGCTTCGTTATCTATCCAG
GGAAGTTTTGGGTGTAATGAATGTTCGGCTAATGTTACTTTACAGCACTA
TGTTGTTCATTTCCCGAGAAGCTTTTCGAAAAGCTTGTTTGAGTCAACAG
AGCATTAAGGAGAATGTTGAGCAAATTAAACTGAAGCAAATGATTAATTT
GACCTGGATTTGCAGTATTGTTGGTTTGTTTTCTTCATTTGTTTTGATTT
TTATCTGGACAAGCTGGTTACCACAACCAAAAGACGACCTTATCTGGCAA
TATCAAATGGCCACCATTTTAGTTGCTGCAAGCTGTAGTTTTGAACTTGC
AGTAGAACCCTTTTGGATACTGGCCCAAAGAAACTCATTACTTTCATTAA
AAGTTATGTTTGAAGGAGTTTATCTAGCTGTTAGATGTTTTATATCGACA
TTTCTGGTTGTTTTCTTTCCTGACAAGGCACTTGTAATGTATGGTGTAAC
TTTTGTTTTAGCAGCCATTGTGTATTCTTTATGCTATGCTATCTATTTCT
GGAAATATTTAACAAAAGATGATTCAAAGAAGACCAAAGAGCTCTCACAA
TTCAAGCAGTTTGCAGACTTTTTGCCTAACATTAGATCAAAGCCTCTTTT
TCATCAAGATTATGTGAACCTTGTTACAAGTTTTTACAAACAATCAATGC
TAAAACAGTTTCTAACAGAAGGGGAGCGTTACATAATGACAATATTTGGT
ATATTGACATTTAGTGAACAAGGAGTTTATGATGTTATAAACAATCTGGG
ATCGCTTGCTGCTAGATTCATATTCATGCCAATTGAGGAAACATATTACA
CTTACTTTTCAAAAATATTGTTACGTGGAATAAGAGCCAATGAGCAGAAA
AAAGAAAGTTTGGATGAAGCTGCAAGATCTTTATTTCTTGTTTTAAAGTT
TGTCTCATTAGTTGGGATGATAATTTTGGTTTTTGGTTACAGCTACTCGT
ATCTTCTTTTGGATTTATACGGAGGAAAAATCCTCAGTGAAAATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027985-exon-sc0000660-1575043694:57057..58265 | TCONS_00027985-exon-sc0000660-1575043694:57057..58265 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1575043694:55427..55661 | TCONS_00027985-exon-sc0000660-1575043694:55427..55661 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1575043694:54828..55102 | TCONS_00027985-exon-sc0000660-1575043694:54828..55102 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1575043694:54249..54724 | TCONS_00027985-exon-sc0000660-1575043694:54249..54724 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1510915933:57057..58265 | TCONS_00027985-exon-sc0000660-1510915933:57057..58265 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1510915933:55427..55661 | TCONS_00027985-exon-sc0000660-1510915933:55427..55661 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1510915933:54828..55102 | TCONS_00027985-exon-sc0000660-1510915933:54828..55102 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1510915933:54249..54724 | TCONS_00027985-exon-sc0000660-1510915933:54249..54724 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1491911889:57057..58265 | TCONS_00027985-exon-sc0000660-1491911889:57057..58265 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1491911889:55427..55661 | TCONS_00027985-exon-sc0000660-1491911889:55427..55661 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1491911889:54828..55102 | TCONS_00027985-exon-sc0000660-1491911889:54828..55102 | Clytia hemisphaerica | exon |
| TCONS_00027985-exon-sc0000660-1491911889:54249..54724 | TCONS_00027985-exon-sc0000660-1491911889:54249..54724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000660 | supercontig | sc0000660:54249..58265 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007594 | RFT1 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005319 | lipid transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006869 | lipid transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006869 |
lipid transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005319 |
lipid transporter activity |
Blast
BLAST of TCONS_00027985 vs. Swiss-Prot (Human)
Match: RFT1 (Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1) HSP 1 Score: 416.772 bits (1070), Expect = 2.297e-136 Identity = 244/537 (45.44%), Postives = 341/537 (63.50%), Query Frame = 3
Query: 87 MASKGQEMKDAVKSASYNMVLQVIFRLSTFSMNAIMLRYLSREVLGVMNVRLMLLYSTMLFISREAFRKACLSQQSIKENVEQIKLKQMINLTWICSIVGLFSSFVLIFIWTSWLPQPKDDLIWQYQMATILVAASCSFELAVEPFWILAQRNSLLSLKVMFEGVYLAVRCFISTFLVVFFPDKALVMYGVTFVLAAIVYSLCYAIYFWKYLTKDDSKKTKELSQFKQFADFLPNI-RSKPLFHQDYVNLVTSFYKQSMLKQFLTEGERYIMTIFGILTFSEQGVYDVINNLGSLAARFIFMPIEETYYTYFSKILLRGIRANEQKKESLDEAARXXXXXXXXXXXXGMIILVFXXXXXXXXXXXXXXKILSENEGPSLMKAYCLYVFIIAINGITECFMFATMSKEEVDKYNYKMLMFSVIFLSASLLLTRYIGSIGFIFANCLNMFLRIIQSSLYINKYFQETEYRPLSAIHPSFASLLTLLISFVVMVISEAIFCCNYGLLYQLCHXXXXXXXXXXXXXSIYFTEHKFVDYLKS 1694
M S+ + + A + AS ++LQV+FRL TF +NA +LR+LS+E++GV+NVRL LLYST LF++REAFR+ACLS + Q Q +NL W+ +G+F S L +IW L P +++ Y +L S EL EPFW+LAQ + + LKV+ E + + ++ ++ FLV++ P L ++ + + V LCY IYF K L +S K + L + D LPNI R+ + L SF+KQS LKQ LTEGERY+MT +L F +QGVYD++NNLGSL AR IF PIEE++Y +F+K+L RG A QK+E + AA L +LK L G+ I VFG++YS L LD+YGG +LS GP L+++YCLYV ++AING+TECF FA MSKEEVD+YN+ ML S FL S LLTR+ GS+GFI ANC NM +RI QS +I++Y++ + +RPL+ +H S L T +S V +SE CC G +L H+AVG CL LG+ + TE K + +L++
Sbjct: 1 MGSQ-EVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSGGT------QRDWSQTLNLLWLTVPLGVFWSLFLGWIWLQLLEVPDPNVVPHYATGVVLFGLSAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVLWLPHWGLYIFSLAQLFYTTVLVLCYVIYFTKLLGSPESTKLQTLP-VSRITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAYSQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKEEVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLAGLHLSPVLLGTFALSGGVTAVSEVFLCCEQGWPARLAHIAVGAFCLGATLGTAFLTETKLIHFLRT 529
The following BLAST results are available for this feature:
|
