TCONS_00028213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028213
Unique NameTCONS_00028213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028213 ID=TCONS_00028213|Name=TCONS_00028213|organism=Clytia hemisphaerica|type=transcript|length=1651bp
gaaagaaacaaataaaaataaaaataaaaacaatgtgAAGTCAATCGTTA
AATAGTCTAAAATACTTATGAGACGAAGATAAGGCCGATTATTGATTGTT
TCTCCTGATGCGAAAATGGAATGGTTATGTATGTGGAGTAGGTTTTTGTT
GTCTTGTGGCTGGAAGTGCACTTTTAGGTGTGGGTTTAACGCCACCAACC
AAATTTAAAGTGGACCCAAAGTGTGACGATGAAGTACAAGAATGTGAAAG
ATATGTAACAGAATATGATCGCAACAACGTCTACTACTGCAAGATTTTCG
GTATTATTCTCTTCACAATCGGAGTAATATTATCAGCTATCGATCTTGGA
TCCTGTATATGTCAATTCTATAAGGGAAACTTTGGTGAGGACCTTGATGA
CCGATCTTGGCATGATAGGGCCGAGAGACTTGAGGAGCCACGAATTGGGG
GTCCAGAAGCTGATCGTTTCTTAGAGATTAGTAATCGTAGGCGAGAAGCA
GCTCGCAACCATCGTACCATGCATACAAATGATTCTGAAGAGGAAGAAGA
ACGTAGACCAATATACAGTAGAGGACAAGAACCGGATTTGAATTGGCGAC
ATTCTAACAGACAACCTTCCTTAGCTGAACGGAGCAACATGAGAAGTGAA
GCTGCTAGAAATAATTATCCAAGACCAAGTAGTACATCACCTAGAACTTC
TCAAACCACCAGACCTAATGCTCCTGCATTTTCTTACCCTTCTGCTCCAC
CCTCACGCCCTTCTACTTCTCCAAGTGCACCCGTCTCCCCACCTGTGACG
TCATCAACAAGAGGTGCCAATAACAGACAGGATCAACCGCCAAGATATAA
CGACCAACCGCCAGGTTACGATCAATTACTCCATCCACCAACTTATTGGG
AAGCTCTTGAACAACAAGGACATTTTGAAGATAATGACATCGAAGAGTCA
ATGACACAAAACAATGAAGAGAGAATCTCACCTGGTGGCAATAATGAAAC
CTCTGTTTGATATCAAAGTCACTCGTTCACTAAGTTCGTTCCTGTCAACT
ATTCTCACAAGGCTCTTAGACAGTGGGATCcatgccttataaactttact
ccataaATCAATTTCCTagactcaaaaaaaatttaagttctCCGTGCGTG
TTCCAGTTATGGAGTTGTATGTAGTATCAAAAGCAACCAACGTGTACAAA
AAAGACACGCTTTTCTTTTCATACAATATTGGACAGAAGGTTATAgtctt
ttcaaaaatgcatggaaattttcaaaataagctctgaaaacccattttta
ccaGGGCCAATGTGGTTTTTATTAGATTTGCCAAATCCATTCTTCCAAGT
CTTTGAAAGTATAAAAGTCACAATGACTAAAGCCATAAGGACTGCTAGCA
AGACTTTAGGTGTCATCTGCCAAATAATCACTGGTGGTTCATTTGGGAAT
TTCCCAGGTTTTTCTTGGCACTATTGAggattttttgaaaagtctataGA
CCTTTTGTCCGAAATTGtggagaaaaaaaagagaacgcGAGACTCGACCA
AAATCTACCAAAGCTGTAGTTTTCAATCCCATTTTAAGCCAATaaatccc
ggggggggcagccaagcaaaatgactgacgggtatgtgcgggcactaagg
g
Run BLAST on NCBI

protein sequence of TCONS_00028213-protein

>TCONS_00028213-protein ID=TCONS_00028213-protein|Name=TCONS_00028213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MRKWNGYVCGVGFCCLVAGSALLGVGLTPPTKFKVDPKCDDEVQECERYV
TEYDRNNVYYCKIFGIILFTIGVILSAIDLGSCICQFYKGNFGEDLDDRS
WHDRAERLEEPRIGGPEADRFLEISNRRREAARNHRTMHTNDSEEEEERR
PIYSRGQEPDLNWRHSNRQPSLAERSNMRSEAARNNYPRPSSTSPRTSQT
TRPNAPAFSYPSAPPSRPSTSPSAPVSPPVTSSTRGANNRQDQPPRYNDQ
PPGYDQLLHPPTYWEALEQQGHFEDNDIEESMTQNNEERISPGGNNETSV
Run BLAST on NCBI

transcript from alignment at sc0000670:104784..108197-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028213 ID=TCONS_00028213|Name=TCONS_00028213|organism=Clytia hemisphaerica|type=transcript|length=3414bp|location=Sequence derived from alignment at sc0000670:104784..108197- (Clytia hemisphaerica)
GAAAGAAACAAATAAAAATAAAAATAAAAACAATGTGAAGTCAATCGTTA
AATAGTCTAAAATACTTATGAGACGAAGATAAGGCCGATTATTGATTGTT
TCTCCTGATGCGAAAATGGAATGGTTATGTATGTGGAGTAGGTTTTTGTT
GTCTTGTGGCTGGAAGTGCACTTTTAGGTGTGGGTTTAACGCCACCAACC
AAATTTAAAGTGGACCCAAAGTGTGACGATGAAGTACAAGAATGTGAAAG
GTATATCTTCTACGAAATGACTTGGAATAGGGAGTGAAATCTTCCAACGT
ATTAGCACTGTGTTCATATATTATATTTTTTCATCACTCCCCAGAATCTT
CCCTTATAATAATACTGTTGACTCTCGCTAATTTCGAACTCGAACGAAAT
GGAAATCTGATTTGTTCGAATTATAGAAAGTATTTAAAGTGTAGTTAAAG
AAGGTTTCTTCTTGACGGGGACTGGAAAAAAGTTCGATAACAGAAGTTCG
AATAAGTGAGGGTTTACTGTATAACCTTGTTTTGCGAGATGCCTTGGAGT
TTTTACAAGATACTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTAAGTTCCCCCCCCCCCTGGGATTT
GTTCGAATTATAGAAAGTATTTAAAGTGTAGTTAAAGAAGGTTTCTTCTT
GACGGGGACTGGAAAGAAGTTTTAATAACAGAAGTTCGAATAAGTGAGAG
TTTACTGTATAACCTTGTTTTGCTCTAATTAAACCGATGTTACACTATAA
TCAGTGTAATATCATAAAAGCTATTATTATATACCGGTAGGCGAAAACAG
CCATTGAATAATTCCTGATATACCACGGTATTATACCACAGTAGAATTTT
TATTTTCAAACTTTTTTTCGAAACTTGATTTTTTGTCACTTTTATTTTGT
TGCTATTTAAAAGAGAGACAATAAAAGAGTTCAATTGTGAATTTCGTGAA
CAATTAAATGACTTAAGTCATCTAAAAAGCAATTAAAAAGAAAAAACATT
CGAATGTTCGATTTGTGTAAGAGTTTTGTGTGAATCTCTCGGAATCTCTC
TACAAAATAGAAACTTATAACTTGTTTTCGTCTTTGGGCATATAATAAAA
CATATATTCAATAGGTTTACGTTGGTTATTAAATTTATTAACCCTCGGTG
ATGAATATTCAATTTGGCTTCGCCTCGTTGAATATTACATCACCTCGGGT
TAATAAATCTCAATAACCAACTTTTACCTATTGAATACCTGCTTATTAAT
ATCTGATGAATCTAAGGCTTAAACCAAACTCCATTACACCTTCAAGCACC
CTTCCCTAAAACTACTAGATATGTAACAGAATATGATCGCAACAACGTCT
ACTACTGCAAGATTTTCGGTATTATTCTCTTCACAATCGGAGTAATATTA
TCAGCTATCGATCTTGGATCCTGTATATGTCAATTCTATAAGGGAAACTT
TGGTGAGGACCTTGATGACCGATCTTGGCATGATAGGGCCGAGAGACTTG
AGGAGCCACGAATTGGGGGTCCAGAAGCTGATCGTTTCTTAGAGATTAGT
AATCGTAGGCGAGAAGCAGCTCGCAACCATCGTACCATGCATACAAATGA
TTCTGAAGAGGAAGAAGAACGTAGACCAATATACAGTAGAGGACAAGAAC
CGGATTTGAATTGGCGACATTCTAACAGACAACCTTCCTTAGCTGAACGG
AGCAACATGAGAAGTGAAGCTGCTAGAAATAATTATCCAAGACCAAGTAG
TACATCACCTAGAACTTCTCAAACCACCAGACCTAATGCTCCTGCATTTT
CTTACCCTTCTGCTCCACCCTCACGCCCTTCTACTTCTCCAAGTGCACCC
GTCTCCCCACCTGTGACGTCATCAACAAGAGGTGCCAATAACAGACAGGA
TCAACCGCCAAGATATAACGGTATTTAAGAGTAATATCCACTGAGACAGC
TTCTGGGTCCTTTTATTTTTTCTGGCCAATTGACAAACCATGCGTATTTC
ATAACATTCTAGTCTTTATGCAGCCCCTTCTTAATACTAAACTTTTAACG
AATCCTAAATTCAACAGTAGTGGAATCCTCATAGATGATTTGAGTCATGA
CAACAAACCTACAAAGTTTGCATCTAAATCTATTCTTTAGATTCAATAGA
AATGCCATTGGCTTTTGCTTCAATTATGATCAACTTTTACCTTTTACTCC
CTGTCATAGTTTTCAATAAAAATACCGTAAACTTACTTCTATTATGATCA
CTTTTTTTACTATAGACCAACCGCCAGGTTACGATCAATTACTCCATCCA
CCAACTTATTGGGAAGCTCTTGAACAACAAGGACATTTTGAAGATAATGA
CATCGAAGAGTCAATGACACAAAACAATGAAGAGAGAATCTCACCTGGTG
GCAATAATGAAACCTCTGTTTGATATCAAAGTCACTCGTTCACTAAGTTC
GTTCCTGTCAACTATTCTCACAAGGCTCTTAGACAGTGGGATCCATGCCT
TATAAACTTTACTCCATAAATCAATTTCCTAGACTCAAAAAAAATTTAAG
TTCTCCGTGCGTGTTCCAGTTATGGAGTTGTATGTAGTATCAAAAGCAAC
CAACGTGTACAAAAAAGACACGCTTTTCTTTTCATACAATATTGGACAGA
AGGTTATAGTCTTTTCAAAAATGCATGGAAATTTTCAAAATAAGCTCTGA
AAACCCATTTTTACCAGGGCCAATGTGGTTTTTATTAGATTTGCCAAATC
CATTCTTCCAAGTCTTTGAAAGTATAAAAGTCACAATGACTAAAGCCATA
AGGACTGCTAGCAAGACTTTAGGTGTCATCTGCCAAATAATCACTGGTGG
TTCATTTGGGAATTTCCCAGGTTTTTCTTGGCACTATTGAGGATTTTTTG
AAAAGTCTATAGACCTTTTGTCCGAAATTGTGGAGAAAAAAAAGAGAACG
CGAGACTCGACCAAAATCTACCAAAGCTGTAGTTTTCAATCCCATTTTAA
GCCAATAAATCCCGGGGGGGGCAGCCAAGCAAAATGACTGACGGGTATGT
GCGGGCACTAAGGG

Coding sequence (CDS) from alignment at sc0000670:104784..108197-

>TCONS_00028213 ID=TCONS_00028213|Name=TCONS_00028213|organism=Clytia hemisphaerica|type=CDS|length=2709bp|location=Sequence derived from alignment at sc0000670:104784..108197- (Clytia hemisphaerica)
ACCAACCGCCAGGTTACGATCAATTACTCCATCCACCAACTTATTGGGAA
GCTCTTGAACAACAAGGACATTTTGAAGATAATGACATCGAAGAGTCAAT
GACACAAAACAATGAAGAGAGAATCTCACCTGGTGGCAATAATGAAACCT
CTGTTTGAATATGTAACAGAATATGATCGCAACAACGTCTACTACTGCAA
GATTTTCGGTATTATTCTCTTCACAATCGGAGTAATATTATCAGCTATCG
ATCTTGGATCCTGTATATGTCAATTCTATAAGGGAAACTTTGGTGAGGAC
CTTGATGACCGATCTTGGCATGATAGGGCCGAGAGACTTGAGGAGCCACG
AATTGGGGGTCCAGAAGCTGATCGTTTCTTAGAGATTAGTAATCGTAGGC
GAGAAGCAGCTCGCAACCATCGTACCATGCATACAAATGATTCTGAAGAG
GAAGAAGAACGTAGACCAATATACAGTAGAGGACAAGAACCGGATTTGAA
TTGGCGACATTCTAACAGACAACCTTCCTTAGCTGAACGGAGCAACATGA
GAAGTGAAGCTGCTAGAAATAATTATCCAAGACCAAGTAGTACATCACCT
AGAACTTCTCAAACCACCAGACCTAATGCTCCTGCATTTTCTTACCCTTC
TGCTCCACCCTCACGCCCTTCTACTTCTCCAAGTGCACCCGTCTCCCCAC
CTGTGACGTCATCAACAAGAGGTGCCAATAACAGACAGGATCAACCGCCA
AGATATAACGATGCGAAAATGGAATGGTTATGTATGTGGAGTAGGTTTTT
GTTGTCTTGTGGCTGGAAGTGCACTTTTAGGTGTGGGTTTAACGCCACCA
ACCAAATTTAAAGTGGACCCAAAGTGTGACGATGAAGTACAAGAATGTGA
AAGACCAACCGCCAGGTTACGATCAATTACTCCATCCACCAACTTATTGG
GAAGCTCTTGAACAACAAGGACATTTTGAAGATAATGACATCGAAGAGTC
AATGACACAAAACAATGAAGAGAGAATCTCACCTGGTGGCAATAATGAAA
CCTCTGTTTGAATATGTAACAGAATATGATCGCAACAACGTCTACTACTG
CAAGATTTTCGGTATTATTCTCTTCACAATCGGAGTAATATTATCAGCTA
TCGATCTTGGATCCTGTATATGTCAATTCTATAAGGGAAACTTTGGTGAG
GACCTTGATGACCGATCTTGGCATGATAGGGCCGAGAGACTTGAGGAGCC
ACGAATTGGGGGTCCAGAAGCTGATCGTTTCTTAGAGATTAGTAATCGTA
GGCGAGAAGCAGCTCGCAACCATCGTACCATGCATACAAATGATTCTGAA
GAGGAAGAAGAACGTAGACCAATATACAGTAGAGGACAAGAACCGGATTT
GAATTGGCGACATTCTAACAGACAACCTTCCTTAGCTGAACGGAGCAACA
TGAGAAGTGAAGCTGCTAGAAATAATTATCCAAGACCAAGTAGTACATCA
CCTAGAACTTCTCAAACCACCAGACCTAATGCTCCTGCATTTTCTTACCC
TTCTGCTCCACCCTCACGCCCTTCTACTTCTCCAAGTGCACCCGTCTCCC
CACCTGTGACGTCATCAACAAGAGGTGCCAATAACAGACAGGATCAACCG
CCAAGATATAACGATGCGAAAATGGAATGGTTATGTATGTGGAGTAGGTT
TTTGTTGTCTTGTGGCTGGAAGTGCACTTTTAGGTGTGGGTTTAACGCCA
CCAACCAAATTTAAAGTGGACCCAAAGTGTGACGATGAAGTACAAGAATG
TGAAAGACCAACCGCCAGGTTACGATCAATTACTCCATCCACCAACTTAT
TGGGAAGCTCTTGAACAACAAGGACATTTTGAAGATAATGACATCGAAGA
GTCAATGACACAAAACAATGAAGAGAGAATCTCACCTGGTGGCAATAATG
AAACCTCTGTTTGAATATGTAACAGAATATGATCGCAACAACGTCTACTA
CTGCAAGATTTTCGGTATTATTCTCTTCACAATCGGAGTAATATTATCAG
CTATCGATCTTGGATCCTGTATATGTCAATTCTATAAGGGAAACTTTGGT
GAGGACCTTGATGACCGATCTTGGCATGATAGGGCCGAGAGACTTGAGGA
GCCACGAATTGGGGGTCCAGAAGCTGATCGTTTCTTAGAGATTAGTAATC
GTAGGCGAGAAGCAGCTCGCAACCATCGTACCATGCATACAAATGATTCT
GAAGAGGAAGAAGAACGTAGACCAATATACAGTAGAGGACAAGAACCGGA
TTTGAATTGGCGACATTCTAACAGACAACCTTCCTTAGCTGAACGGAGCA
ACATGAGAAGTGAAGCTGCTAGAAATAATTATCCAAGACCAAGTAGTACA
TCACCTAGAACTTCTCAAACCACCAGACCTAATGCTCCTGCATTTTCTTA
CCCTTCTGCTCCACCCTCACGCCCTTCTACTTCTCCAAGTGCACCCGTCT
CCCCACCTGTGACGTCATCAACAAGAGGTGCCAATAACAGACAGGATCAA
CCGCCAAGATATAACGATGCGAAAATGGAATGGTTATGTATGTGGAGTAG
GTTTTTGTTGTCTTGTGGCTGGAAGTGCACTTTTAGGTGTGGGTTTAACG
CCACCAACCAAATTTAAAGTGGACCCAAAGTGTGACGATGAAGTACAAGA
ATGTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015972XLOC_015972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028213-proteinTCONS_00028213-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028213-exon-sc0000670-1575043694:107948..108197TCONS_00028213-exon-sc0000670-1575043694:107948..108197Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1575043694:105928..106529TCONS_00028213-exon-sc0000670-1575043694:105928..106529Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1575043694:104784..105582TCONS_00028213-exon-sc0000670-1575043694:104784..105582Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1510915933:107948..108197TCONS_00028213-exon-sc0000670-1510915933:107948..108197Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1510915933:105928..106529TCONS_00028213-exon-sc0000670-1510915933:105928..106529Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1510915933:104784..105582TCONS_00028213-exon-sc0000670-1510915933:104784..105582Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1491911889:107948..108197TCONS_00028213-exon-sc0000670-1491911889:107948..108197Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1491911889:105928..106529TCONS_00028213-exon-sc0000670-1491911889:105928..106529Clytia hemisphaericaexon
TCONS_00028213-exon-sc0000670-1491911889:104784..105582TCONS_00028213-exon-sc0000670-1491911889:104784..105582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:104784..108197 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.3563	15.4666	6.27391	4.11382	24.8422	19.3036	16.4465	18.7427	18.8533	22.7057	26.4801	17.9907	14.6747	12.4195	4.99312	7.13098	15.2026	17.5123	9.68369	12.0171	5.54606	5.11634	6.67928	7.87587	11.0148	11.5661	7.75316	7.91074	6.34445	5.86933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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