TCONS_00028532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028532
Unique NameTCONS_00028532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028532 ID=TCONS_00028532|Name=TCONS_00028532|organism=Clytia hemisphaerica|type=transcript|length=976bp
CGTCGTGGAAGGATCAAAAACAAGACACTGCAAGGTACGGCCGGAGGGGG
ATGTCCTCCTCCACCCAATCAAGCCAACCCAAACAAAGATTTTACAAAAA
GAAAGGAAACTGAATGCCTCAGATGCATCAACAGAGCAACAGAACAACAC
ACCCTCAGAGCTTGGTGGGAAGAGTCCTACAAAAAGTCAAAACAGATCGA
GTCGAGAGATGCATGATAGTCGTCCCAAACTGGCCCAGCCAGCCTTGGTA
CACAAAATTAACAAAGATGATGGTCTCAGAACCAAAAATCATAAAACCAG
CACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAAGTC
CCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTACTTT
TGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAGAAG
CTTTAACAAATTGAATTAtattaaaaactttttgttgCTATATATATTAA
AATTATTTGACTCAAATTGTTGTACTCAGATTACACAATAGTCATTCtct
taaagaaaagaaaagttgaATTTATATCGAAAAGAATCGATAATACTGTC
TAAAATTCTTTACTCTGAATTCCGAAAAACTTAGGCACACTACGAAATCT
CGCTTTATAGTCGGACATTAAGGgaataatttatgcaataaaatTATCCC
AAAACAAACGATACTTACCTGTAAGTTGAAGTTTGTTGGGAGTTTTATTA
ATAAATTATTCCCAGATGGATGAGTATAAAGTGCCCACCACTAACAACCC
ACCCATTTTATACTCATCCATCAAATGTACCAAACTTTTTCGGCTATGCT
ACGAACCCTGAAGTTAGCTGCGCGTTCTATCTCACTTTATACTCATCCAT
CTGGGAATAATTTATTAATAAAACTCCCAACAAACTTCAACTTACAGGTA
AGTATCGTTTGTTTTGGGATAAATTT
Run BLAST on NCBI

protein sequence of TCONS_00028532-protein

>TCONS_00028532-protein ID=TCONS_00028532-protein|Name=TCONS_00028532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MPQMHQQSNRTTHPQSLVGRVLQKVKTDRVERCMIVVPNWPSQPWYTKLT
KMMVSEPKIIKPAHSTRSATTSKAKLRKVPMEHIVRNAGWANARTFANHY
DKTVIEDINLLEALTN
Run BLAST on NCBI

transcript from alignment at sc0000690:824..5399-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028532 ID=TCONS_00028532|Name=TCONS_00028532|organism=Clytia hemisphaerica|type=transcript|length=4576bp|location=Sequence derived from alignment at sc0000690:824..5399- (Clytia hemisphaerica)
CGTCGTGGAAGGATCAAAAACAAGACACTGCAAGTACAAAAGATAAGTTT
ACTAATTATTTTTTCTTCTATTTTAGCCTAACTAATAAAACATGGAGGAT
AACTCAGTTCCTGATAATGCAACTCTTTTACAAATGTTTGAAACCATGAA
GTCTGAAATGTCGAAACTCAAACAAAACAACTCTCAACAAAGAATTAACC
TCTCTCCCCCAGCAAGTGATAATGATCTTGAAGATTTTGATTATGATTAT
GATGATGTAGAATTATACGCATCACAAGATGAAATTGATTTAATAGACCC
AGTTGAGGAAAATGGGGGAGAGGAAGAAGAAGTAGAATATGAATCTACTG
AACAACCTTCTTCTTTAACTGTTGCTACTGCCACAGATGCAGCTACTGCA
AGTACCAGCCCCAAAAATAAAAATGATGAAATTGGAGAGGATATATTTTC
AGAAATTAAAGTAACTAATTCGAGTGATTCTCAAGGAGAAAAAATTTCCG
AAAGTTGGGCCAAAATTATTGATGATAGCTTTCATGGGCGAAAAGATAAA
GATGATATTAAAAAACTAAGAGAAATGTTTCCAACACCTAAGAATTGTAC
GTTACCTACCCCAAAATTAAATATTGAAATTTGGCAACTTCTTAATGCTT
TTCAAAAAAGATCTGATGTTTCATTGAAAATGATCCAAAGAAATATCATT
GCCGGAACAAGCGGTATTATCGAGCTCGTCCAGGATGTCTTGAACAACAA
AGCAGACAAAAAACAACTAGTACAAAAATCAACAGACATAATCGGTTTGC
TAGGACATGCCTCAAATGAAATATCTTTGAAACGTAAACAATATATTAAA
ACTGCCTTGAAAGATGAATATAAAGATTTGGTTTCCATTACAAACCAAGA
AGACTCCAAATCAAAATCATCTGAAAAACTTTTTGGAGAAAACCTAAGTG
AATGTATAAAAGATCTTAAGCTGAGGAATAAACTTAAAGGCCCCACTACC
TCAACACGTGGAAAACACCGAGGTGGTTACAGTGGTAGATTCCAACCTTA
TAACAAGGACAATTCGTCTTTTTTAGGGTACGGCCGGAGGGGGATGTCCT
CCTCCACCCAATCAAGCCAACCCAAACAAAGATTTTACAAAAAGAAAGGA
AACTGAATGCCTCAGATGCATCAACAGAGCAACAGAACAACACACCCTCA
GAGGTAAGCAATTTTCTAAAACTTTGCTCTCATAAAGTAGAAAAATTTCA
AGGTGGTAGACTTTCTAATTACTCTAGCCAGTGGAAAACACTAACTAGTG
ATAAAAATATTTTGGATATGGTTACTTATGGGGACACTATAGAATTTGAG
AATGAGGTTCAAAGTAAACACTTTTGTCTAAACCAATATGATAATGAAGA
TGAGAGCTTAGTCCTCTCTGAAGTGCAAAAAATGCAAAAAAGGGGAATTA
TCAAGGAAACTTCTCATGAAGAGATAGAATATGTATCTCCCATATTCTGT
ACCCCAAAAACTGATGGTGGGATAAGATTGATATTGAATTTGAAAAAATT
AAACCAACATATAAAATTTCGTCACTTCAAAATGCAAACCATCAGGGATG
CTTTACTAATGATAAATGAAAATGATTTTCTGACATCCATAGATCTTAAA
GATGCATACTATAGTGTTCCTATTCATAAAGATTTCCAAAGTTATCTCAA
ATTTCAATTTAGAGGAAAATTGTTTAAATACACCTGTTATCCTAATGGCT
TAGGTCCTTGTCCTAGAAAATTTACCAAACTAACTACTGTCCCCATGAGT
GAGATAAGAAAACAGGGTCACTCTATAGGTGGTTATATAGATGATTTCTT
AATGGCTGAAGATTCATATCAGAGAGCCTTGAGAGGAACATTAGTGGCTG
CAAAACTTTTTGACTTTGCTGGGTTTGTAGTCCACCCAATTAAATCTCAG
TTATTACCATCACAAAGAATTGTTTTTTTGGGATTCCTTATTGACACAGT
GACAATGACTTTAAGGCTCACGGAAAAGCGCTCAAAAACTTTGAAAGACC
ACATTAACAAACTCTTGACAATCAAAAAACCAACAATCAGATATGTTGCT
AAGGTCATTGGTCATATTATTTCGGCACTTCCGGCTTCAAAATTTGGTGC
ATTACATTACAGAAAACTTGAAAAGGACAAAACTAATGCATTGTTTGAAA
ATGACCACAATTTCGACGCCCAAATGGGCCTTAGTGAGGAAGGAAAAAGA
GACCTGATCTGGTGGAGAAACTCACTTCCTTCACTAAAAAATTGGATAAG
ACCTCCCAAAATAGATGAAACCATCTCAACTGATGCATCAAAATTTGCTT
GGGGTGGAATTTTTGACCAAAATATAGGAGGCTCATGGTCACAATCTGAG
ATTGAATACCACATTAATGTAAAAGAGATGTTAGCAATACTTTTCACTTT
AAAAAGTTTTGGGGAAAAATTTGAAAATAAACATATTACTATATTGTCAG
ATAATACAACTGCAATTGGGGTGATAAACAAAATGGGCAGCAGCAAGAGT
GTCTTATGTGACAATACATGTCATCAGATTTGGGAGTTTGCACAAAAACA
CAACATGTGGATAACATGTTCTTACATCCCAGGAAAAGACAACATTGATG
CTGACCATGAATCAAGAAAAAATTATAAAGGGAGTAACTGGATGTTAAAC
AGAAAGATATTTTACAATGTTTGTCAAGAACTGAATTACTACCCGGATAT
AGATTGCTTTGCAAATAGACTAAACCACCAGACTCCCACTTATATATCAT
ACAAGCCAGACCCAGGAGCAAAATTTGTTGACAGCTTCACATTAAACTGG
TCTCATTTAAATTACCCATATGCCTTTCCCCCTTTCAGCTTGGTGGGAAG
AGTCCTACAAAAAGTCAAAACAGATCGAGTCGAGAGATGCATGATAGTCG
TCCCAAACTGGCCCAGCCAGCCTTGGTACACAAAATTAACAAAGATGATG
GTCTCAGAACCAAAAATCATAAAACCAGGTCAGAAAGTCTTAGTTTTACC
GGAGGACCCGACTGCAATTCACAACATCTGGAAAAGAGTGGAAATTATGA
TCTGCCTTGTGTCAGGGAGGAATATTTAAAACAAGGGTTTTCTGAGGATG
CTATTGATATTTTAATGAAAAGTTGGCGCTCGGGAACTGTAAAACAGTAC
CAACCAGTAATAAAAAATTGGATTAAGTTTTGTGGGAATGACATAGATCC
TTTTCAACCACCCATAACAAAGTGTCTTGATTTCCTCTCATCTCTTTTCA
AGAATGGGTCAAGTTATAACCAGATAGCAAATGCAAGAAGTGCTTTATCG
TCAATTGTATCACCAATGCATGAAATAACCTTTGGTAGATTACCAGTTGT
AAAAAGGTTTATGAAAGGCATTTTTGAAAGTAGACCTGTATTACCTAGAA
ATAACATTATCTGGGATGTAAATATTTTATTTGATTATCTTAGAACTCTA
CCAGATTTAGAAGCTCTGTCCTTAAAACAGCTAACTCAGAAATTAGCAAT
TTTACTGGCAATTGCCTCAGGCGGCCAAAGACTTCAAACTGTCCATGCTA
TTCTTTTAAAAGATATCATTTTTCAAGAAAATAAGATTATAATACCTATT
ACATCTGTTCTAAAACAAACGAGACCCTCAAAACACATTGAGCCTCTGAC
TATCAGAAAATTTGGGGACAAAAAGCTATGTATACACTCTATTCTTATTT
ACTATATTGAATTTACAAAACCATTAAGAAAGGCAGAACAATTATCTATA
AGTTATAGAAAGCCACACAAATGTGTCACAAAAGATACTGTGGCAAGGTG
GTGTAAACATATATTAAGAAACTCTGGCATCGATACCTCTATTTTTTCAG
CACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAAGTC
CCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTACTTT
TGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAGAAG
CTTTAACAAATTGAATTATATTAAAAACTTTTTGTTGCTATATATATTAA
AATTATTTGACTCAAATTGTTGTACTCAGATTACACAATAGTCATTCTCT
TAAAGAAAAGAAAAGTTGAATTTATATCGAAAAGAATCGATAATACTGTC
TAAAATTCTTTACTCTGAATTCCGAAAAACTTAGGCACACTACGAAATCT
CGCTTTATAGTCGGACATTAAGGGAATAATTTATGCAATAAAATTATCCC
AAAACAAACGATACTTACCTGTAAGTTGAAGTTTGTTGGGAGTTTTATTA
ATAAATTATTCCCAGATGGATGAGTATAAAGTGCCCACCACTAACAACCC
ACCCATTTTATACTCATCCATCAAATGTACCAAACTTTTTCGGCTATGCT
ACGAACCCTGAAGTTAGCTGCGCGTTCTATCTCACTTTATACTCATCCAT
CTGGGAATAATTTATTAATAAAACTCCCAACAAACTTCAACTTACAGGTA
AGTATCGTTTGTTTTGGGATAAATTT

Coding sequence (CDS) from alignment at sc0000690:824..5399-

>TCONS_00028532 ID=TCONS_00028532|Name=TCONS_00028532|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000690:824..5399- (Clytia hemisphaerica)
CACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAAGTC
CCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTACTTT
TGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAGAAG
CTTTAACAAATTGACTTGGTGGGAAGAGTCCTACAAAAAGTCAAAACAGA
TCGAGTCGAGAGATGCATGATAGTCGTCCCAAACTGGCCCAGCCAGCCTT
GGTACACAAAATTAACAAAGATGATGGTCTCAGAACCAAAAATCATAAAA
CCAGATGCCTCAGATGCATCAACAGAGCAACAGAACAACACACCCTCAGA
GCACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAAGT
CCCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTACTT
TTGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAGAA
GCTTTAACAAATTGACTTGGTGGGAAGAGTCCTACAAAAAGTCAAAACAG
ATCGAGTCGAGAGATGCATGATAGTCGTCCCAAACTGGCCCAGCCAGCCT
TGGTACACAAAATTAACAAAGATGATGGTCTCAGAACCAAAAATCATAAA
ACCAGATGCCTCAGATGCATCAACAGAGCAACAGAACAACACACCCTCAG
AGCACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAAG
TCCCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTACT
TTTGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAGA
AGCTTTAACAAATTGACTTGGTGGGAAGAGTCCTACAAAAAGTCAAAACA
GATCGAGTCGAGAGATGCATGATAGTCGTCCCAAACTGGCCCAGCCAGCC
TTGGTACACAAAATTAACAAAGATGATGGTCTCAGAACCAAAAATCATAA
AACCAGATGCCTCAGATGCATCAACAGAGCAACAGAACAACACACCCTCA
GAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016173XLOC_016173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028532-proteinTCONS_00028532-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028532-exon-sc0000690-1575043694:5367..5399TCONS_00028532-exon-sc0000690-1575043694:5367..5399Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1575043694:4197..4323TCONS_00028532-exon-sc0000690-1575043694:4197..4323Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1575043694:2372..2511TCONS_00028532-exon-sc0000690-1575043694:2372..2511Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1575043694:824..1499TCONS_00028532-exon-sc0000690-1575043694:824..1499Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1510915933:5367..5399TCONS_00028532-exon-sc0000690-1510915933:5367..5399Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1510915933:4197..4323TCONS_00028532-exon-sc0000690-1510915933:4197..4323Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1510915933:2372..2511TCONS_00028532-exon-sc0000690-1510915933:2372..2511Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1510915933:824..1499TCONS_00028532-exon-sc0000690-1510915933:824..1499Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1491911889:5367..5399TCONS_00028532-exon-sc0000690-1491911889:5367..5399Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1491911889:4197..4323TCONS_00028532-exon-sc0000690-1491911889:4197..4323Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1491911889:2372..2511TCONS_00028532-exon-sc0000690-1491911889:2372..2511Clytia hemisphaericaexon
TCONS_00028532-exon-sc0000690-1491911889:824..1499TCONS_00028532-exon-sc0000690-1491911889:824..1499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:824..5399 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.458498	0	0.75394	1.50423	0	2.37483e-08	2.01446	2.20108	1.4169	2.59031	1.73981	0	0	0	1.30543e-05	0	0	0.00207995	1.06431	0.762928	1.27318e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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