TCONS_00028535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028535
Unique NameTCONS_00028535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028535 ID=TCONS_00028535|Name=TCONS_00028535|organism=Clytia hemisphaerica|type=transcript|length=2236bp
gtttaaaactcagcctcctaaatatttggggtaggtaaaatatgtacaaa
gaaattcatacttttccaacccggcaaaTCTTTAAGAGAAGCAAACAATa
gaatataattaccctttccaaataaacctcttcggtggcgagcatagtct
actctgacgtaattgtaaaatttatgtgatgggagtttgagatagtaatg
taatgttgtttggggaattttattgcataaattattcCCTTAATGTCCGA
CTATAAAGCGAGATAGAACGCGCAGCTAACTTCAGTTCAAAACGCGAAAG
CAACAGGGCGGCATTAGCtgcgagaaaatcaaaacaatttcttttaGAAG
TAACTCTCGTCGTGGAAGGATCAAAAACAAGACACTGCAAGTACAAAAGA
TAAGTTTactaattattttttcttctattttagCCTAACTAATAAAACAT
GGAGGATAACTCAGTTCCTGATAATGCAACTCTTTTACAAATGTTTGAAA
CCATGAAGTCTGAAATGTCGAAACTCAAACAAAACAACTCTCAACAAAGA
ATTAACCTCTCTCCCCCAGCAAGTGATAATGATCTTGAAGATTTTGATTA
TGATTATGATGATGTAGAATTATACGCATCACAAGATGAAATTGATTTAA
TAGACCCAGTTGAGGAAAATGGGGGAGAGGAAGAAGAAGTAGAATATGAA
TCTACTGAACAACCTTCTTCTTTAACTGTTGCTACTGCCACAGATGCAGC
TACTGCAAGTACCAGCCCCAAAAATAAAAATGATGAAATTGGAGAGGATA
TATTTTCAGAAATTAAAGTAACTAATTCGAGTGATTCTCAAGGAGAAAAA
ATTTCCGAAAGTTGGGCCAAAATTATTGATGATAGCTTTCATGGGCGAAA
AGATAAAGATGATATTAAAAAACTAAGAGAAATGTTTCCAACACCTAAGA
ATTGTACGTTACCTACCCCAAAATTAAATATTGAAATTTGGCAACTTCTT
AATGCTTTTCAAAAAAGATCTGATGTTTCATTGAAAATGATCCAAAGAAA
TATCATTGCCGGAACAAGCGGTATTATCGAGCTCGTCCAGGATGTCTTGA
ACAACAAAGCAGACAAAAAACAACTAGTACAAAAATCAACAGACATAATC
GGTTTGCTAGGACATGCCTCAAATGAAATATCTTTGAAACGTAAACAATA
TATTAAAACTGCCTTGAAAGATGAATATAAAGATTTGGTTTCCATTACAA
ACCAAGAAGACTCCAAATCAAAATCATCTGAAAAACTTTTTGGAGAAAAC
CTAAGTGAATGTATAAAAGATCTTAAGCTGAGGAATAAACTTAAAGGCCC
CACTACCTCAACACGTGGAAAACACCGAGGTGGTTACAGTGGTAGATTCC
AACCTTATAACAAGGACAATTCGTCTTTTTTAGGGTACGGCCGGAGGGGG
ATGTCCTCCTCCACCCAATCAAGCCAACCCAAACAAAGATTTTACAAAAA
GAAAGGAAACTGAATGCCTCAGATGCATCAACAGAGCAACAGAACAACAC
ACCCTCAGAGCACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTT
ACGTAAAGTCCCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACG
CTCGTACTTTTGCAAATCATTATGACAAAACTGTCATTGAAGACATCAAT
CTCTTAGAAGCTTTAACAAATTGAATTAtattaaaaactttttgttgCTA
TATATATTAAAATTATTTGACTCAAATTGTTGTACTCAGATTACACAATA
GTCATTCtcttaaagaaaagaaaagttgaATTTATATCGAAAAGAATCGA
TAATACTGTCTAAAATTCTTTACTCTGAATTCCGAAAAACTTAGGCACAC
TACGAAATCTCGCTTTATAGTCGGACATTAAGGgaataatttatgcaata
aaatTATCCCAAAACAAACGATACTTACCTGTAAGTTGAAGTTTGTTGGG
AGTTTTATTAATAAATTATTCCCAGATGGATGAGTATAAAGTGCCCACCA
CTAACAACCCACCCATTTTATACTCATCCATCAAATGTACCAAACTTTTT
CGGCTATGCTACGAACCCTGAAGTTAGCTGCGCGTTCTATCTCACTTTAT
ACTCATCCATCTGGGAATAATTTATTAATAAAACTCCCAACAAACTTCAA
CTTACAGGTAAGTATCGTTTGTTTTGGGATAAATTT
Run BLAST on NCBI

transcript from alignment at sc0000690:824..5756-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028535 ID=TCONS_00028535|Name=TCONS_00028535|organism=Clytia hemisphaerica|type=transcript|length=4933bp|location=Sequence derived from alignment at sc0000690:824..5756- (Clytia hemisphaerica)
GTTTAAAACTCAGCCTCCTAAATATTTGGGGTAGGTAAAATATGTACAAA
GAAATTCATACTTTTCCAACCCGGCAAATCTTTAAGAGAAGCAAACAATA
GAATATAATTACCCTTTCCAAATAAACCTCTTCGGTGGCGAGCATAGTCT
ACTCTGACGTAATTGTAAAATTTATGTGATGGGAGTTTGAGATAGTAATG
TAATGTTGTTTGGGGAATTTTATTGCATAAATTATTCCCTTAATGTCCGA
CTATAAAGCGAGATAGAACGCGCAGCTAACTTCAGTTCAAAACGCGAAAG
CAACAGGGCGGCATTAGCTGCGAGAAAATCAAAACAATTTCTTTTAGAAG
TAACTCTCGTCGTGGAAGGATCAAAAACAAGACACTGCAAGTACAAAAGA
TAAGTTTACTAATTATTTTTTCTTCTATTTTAGCCTAACTAATAAAACAT
GGAGGATAACTCAGTTCCTGATAATGCAACTCTTTTACAAATGTTTGAAA
CCATGAAGTCTGAAATGTCGAAACTCAAACAAAACAACTCTCAACAAAGA
ATTAACCTCTCTCCCCCAGCAAGTGATAATGATCTTGAAGATTTTGATTA
TGATTATGATGATGTAGAATTATACGCATCACAAGATGAAATTGATTTAA
TAGACCCAGTTGAGGAAAATGGGGGAGAGGAAGAAGAAGTAGAATATGAA
TCTACTGAACAACCTTCTTCTTTAACTGTTGCTACTGCCACAGATGCAGC
TACTGCAAGTACCAGCCCCAAAAATAAAAATGATGAAATTGGAGAGGATA
TATTTTCAGAAATTAAAGTAACTAATTCGAGTGATTCTCAAGGAGAAAAA
ATTTCCGAAAGTTGGGCCAAAATTATTGATGATAGCTTTCATGGGCGAAA
AGATAAAGATGATATTAAAAAACTAAGAGAAATGTTTCCAACACCTAAGA
ATTGTACGTTACCTACCCCAAAATTAAATATTGAAATTTGGCAACTTCTT
AATGCTTTTCAAAAAAGATCTGATGTTTCATTGAAAATGATCCAAAGAAA
TATCATTGCCGGAACAAGCGGTATTATCGAGCTCGTCCAGGATGTCTTGA
ACAACAAAGCAGACAAAAAACAACTAGTACAAAAATCAACAGACATAATC
GGTTTGCTAGGACATGCCTCAAATGAAATATCTTTGAAACGTAAACAATA
TATTAAAACTGCCTTGAAAGATGAATATAAAGATTTGGTTTCCATTACAA
ACCAAGAAGACTCCAAATCAAAATCATCTGAAAAACTTTTTGGAGAAAAC
CTAAGTGAATGTATAAAAGATCTTAAGCTGAGGAATAAACTTAAAGGCCC
CACTACCTCAACACGTGGAAAACACCGAGGTGGTTACAGTGGTAGATTCC
AACCTTATAACAAGGACAATTCGTCTTTTTTAGGGTACGGCCGGAGGGGG
ATGTCCTCCTCCACCCAATCAAGCCAACCCAAACAAAGATTTTACAAAAA
GAAAGGAAACTGAATGCCTCAGATGCATCAACAGAGCAACAGAACAACAC
ACCCTCAGAGGTAAGCAATTTTCTAAAACTTTGCTCTCATAAAGTAGAAA
AATTTCAAGGTGGTAGACTTTCTAATTACTCTAGCCAGTGGAAAACACTA
ACTAGTGATAAAAATATTTTGGATATGGTTACTTATGGGGACACTATAGA
ATTTGAGAATGAGGTTCAAAGTAAACACTTTTGTCTAAACCAATATGATA
ATGAAGATGAGAGCTTAGTCCTCTCTGAAGTGCAAAAAATGCAAAAAAGG
GGAATTATCAAGGAAACTTCTCATGAAGAGATAGAATATGTATCTCCCAT
ATTCTGTACCCCAAAAACTGATGGTGGGATAAGATTGATATTGAATTTGA
AAAAATTAAACCAACATATAAAATTTCGTCACTTCAAAATGCAAACCATC
AGGGATGCTTTACTAATGATAAATGAAAATGATTTTCTGACATCCATAGA
TCTTAAAGATGCATACTATAGTGTTCCTATTCATAAAGATTTCCAAAGTT
ATCTCAAATTTCAATTTAGAGGAAAATTGTTTAAATACACCTGTTATCCT
AATGGCTTAGGTCCTTGTCCTAGAAAATTTACCAAACTAACTACTGTCCC
CATGAGTGAGATAAGAAAACAGGGTCACTCTATAGGTGGTTATATAGATG
ATTTCTTAATGGCTGAAGATTCATATCAGAGAGCCTTGAGAGGAACATTA
GTGGCTGCAAAACTTTTTGACTTTGCTGGGTTTGTAGTCCACCCAATTAA
ATCTCAGTTATTACCATCACAAAGAATTGTTTTTTTGGGATTCCTTATTG
ACACAGTGACAATGACTTTAAGGCTCACGGAAAAGCGCTCAAAAACTTTG
AAAGACCACATTAACAAACTCTTGACAATCAAAAAACCAACAATCAGATA
TGTTGCTAAGGTCATTGGTCATATTATTTCGGCACTTCCGGCTTCAAAAT
TTGGTGCATTACATTACAGAAAACTTGAAAAGGACAAAACTAATGCATTG
TTTGAAAATGACCACAATTTCGACGCCCAAATGGGCCTTAGTGAGGAAGG
AAAAAGAGACCTGATCTGGTGGAGAAACTCACTTCCTTCACTAAAAAATT
GGATAAGACCTCCCAAAATAGATGAAACCATCTCAACTGATGCATCAAAA
TTTGCTTGGGGTGGAATTTTTGACCAAAATATAGGAGGCTCATGGTCACA
ATCTGAGATTGAATACCACATTAATGTAAAAGAGATGTTAGCAATACTTT
TCACTTTAAAAAGTTTTGGGGAAAAATTTGAAAATAAACATATTACTATA
TTGTCAGATAATACAACTGCAATTGGGGTGATAAACAAAATGGGCAGCAG
CAAGAGTGTCTTATGTGACAATACATGTCATCAGATTTGGGAGTTTGCAC
AAAAACACAACATGTGGATAACATGTTCTTACATCCCAGGAAAAGACAAC
ATTGATGCTGACCATGAATCAAGAAAAAATTATAAAGGGAGTAACTGGAT
GTTAAACAGAAAGATATTTTACAATGTTTGTCAAGAACTGAATTACTACC
CGGATATAGATTGCTTTGCAAATAGACTAAACCACCAGACTCCCACTTAT
ATATCATACAAGCCAGACCCAGGAGCAAAATTTGTTGACAGCTTCACATT
AAACTGGTCTCATTTAAATTACCCATATGCCTTTCCCCCTTTCAGCTTGG
TGGGAAGAGTCCTACAAAAAGTCAAAACAGATCGAGTCGAGAGATGCATG
ATAGTCGTCCCAAACTGGCCCAGCCAGCCTTGGTACACAAAATTAACAAA
GATGATGGTCTCAGAACCAAAAATCATAAAACCAGGTCAGAAAGTCTTAG
TTTTACCGGAGGACCCGACTGCAATTCACAACATCTGGAAAAGAGTGGAA
ATTATGATCTGCCTTGTGTCAGGGAGGAATATTTAAAACAAGGGTTTTCT
GAGGATGCTATTGATATTTTAATGAAAAGTTGGCGCTCGGGAACTGTAAA
ACAGTACCAACCAGTAATAAAAAATTGGATTAAGTTTTGTGGGAATGACA
TAGATCCTTTTCAACCACCCATAACAAAGTGTCTTGATTTCCTCTCATCT
CTTTTCAAGAATGGGTCAAGTTATAACCAGATAGCAAATGCAAGAAGTGC
TTTATCGTCAATTGTATCACCAATGCATGAAATAACCTTTGGTAGATTAC
CAGTTGTAAAAAGGTTTATGAAAGGCATTTTTGAAAGTAGACCTGTATTA
CCTAGAAATAACATTATCTGGGATGTAAATATTTTATTTGATTATCTTAG
AACTCTACCAGATTTAGAAGCTCTGTCCTTAAAACAGCTAACTCAGAAAT
TAGCAATTTTACTGGCAATTGCCTCAGGCGGCCAAAGACTTCAAACTGTC
CATGCTATTCTTTTAAAAGATATCATTTTTCAAGAAAATAAGATTATAAT
ACCTATTACATCTGTTCTAAAACAAACGAGACCCTCAAAACACATTGAGC
CTCTGACTATCAGAAAATTTGGGGACAAAAAGCTATGTATACACTCTATT
CTTATTTACTATATTGAATTTACAAAACCATTAAGAAAGGCAGAACAATT
ATCTATAAGTTATAGAAAGCCACACAAATGTGTCACAAAAGATACTGTGG
CAAGGTGGTGTAAACATATATTAAGAAACTCTGGCATCGATACCTCTATT
TTTTCAGCACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACG
TAAAGTCCCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTC
GTACTTTTGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTC
TTAGAAGCTTTAACAAATTGAATTATATTAAAAACTTTTTGTTGCTATAT
ATATTAAAATTATTTGACTCAAATTGTTGTACTCAGATTACACAATAGTC
ATTCTCTTAAAGAAAAGAAAAGTTGAATTTATATCGAAAAGAATCGATAA
TACTGTCTAAAATTCTTTACTCTGAATTCCGAAAAACTTAGGCACACTAC
GAAATCTCGCTTTATAGTCGGACATTAAGGGAATAATTTATGCAATAAAA
TTATCCCAAAACAAACGATACTTACCTGTAAGTTGAAGTTTGTTGGGAGT
TTTATTAATAAATTATTCCCAGATGGATGAGTATAAAGTGCCCACCACTA
ACAACCCACCCATTTTATACTCATCCATCAAATGTACCAAACTTTTTCGG
CTATGCTACGAACCCTGAAGTTAGCTGCGCGTTCTATCTCACTTTATACT
CATCCATCTGGGAATAATTTATTAATAAAACTCCCAACAAACTTCAACTT
ACAGGTAAGTATCGTTTGTTTTGGGATAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016173XLOC_016173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028535-exon-sc0000690-1575043694:4197..5756TCONS_00028535-exon-sc0000690-1575043694:4197..5756Clytia hemisphaericaexon
TCONS_00028535-exon-sc0000690-1575043694:824..1499TCONS_00028535-exon-sc0000690-1575043694:824..1499Clytia hemisphaericaexon
TCONS_00028535-exon-sc0000690-1510915933:4197..5756TCONS_00028535-exon-sc0000690-1510915933:4197..5756Clytia hemisphaericaexon
TCONS_00028535-exon-sc0000690-1510915933:824..1499TCONS_00028535-exon-sc0000690-1510915933:824..1499Clytia hemisphaericaexon
TCONS_00028535-exon-sc0000690-1491911889:4197..5756TCONS_00028535-exon-sc0000690-1491911889:4197..5756Clytia hemisphaericaexon
TCONS_00028535-exon-sc0000690-1491911889:824..1499TCONS_00028535-exon-sc0000690-1491911889:824..1499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:824..5756 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91228	0.492017	1.62549	0.00101608	1.73659	1.45405	1.58687	1.98376	1.68428	1.68164	1.42621	1.97446	2.86922	2.7919	0.650944	9.70054e-08	2.60768	0.00306984	1.43978	1.42933	3.99618	2.77044	1.36595	1.39756	2.15804	1.70789	0.000530159	0.000142612	2.35753	1.07182
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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