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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028556 ID=TCONS_00028556|Name=TCONS_00028556|organism=Clytia hemisphaerica|type=transcript|length=1623bpRun BLAST on NCBI protein sequence of TCONS_00028556-protein >TCONS_00028556-protein ID=TCONS_00028556-protein|Name=TCONS_00028556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MGKHKSRDRSRSRSPHSSSSGKHQHSKKSKKKYSRKDSSSDSSDQESGNRRun BLAST on NCBI transcript from alignment at sc0000691:158728..172729- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028556 ID=TCONS_00028556|Name=TCONS_00028556|organism=Clytia hemisphaerica|type=transcript|length=14002bp|location=Sequence derived from alignment at sc0000691:158728..172729- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000691:158728..172729- >TCONS_00028556 ID=TCONS_00028556|Name=TCONS_00028556|organism=Clytia hemisphaerica|type=CDS|length=20007bp|location=Sequence derived from alignment at sc0000691:158728..172729- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028556 vs. Swiss-Prot (Human)
Match: CATIN (Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3) HSP 1 Score: 279.641 bits (714), Expect = 4.699e-84 Identity = 184/417 (44.12%), Postives = 270/417 (64.75%), Query Frame = 3
Query: 381 GVNDLGYTNTDNPFGDTNLTDNFVWNKKHQQEGTKNIAQKQ---RHK--QEELRDELXXXXXXXXXXXXXXXXXXXXMTLMQREKEAAMFSNWEKQEDTFHLQQARLRSSIRITNGRAKPIDLLAVYINPEEENLEIQMHEPYAALVGLSIDDLEDLLADITVYLEIDQEKNIDFWEDITIIVKDELAKLKKMRGE---VSNRRDVINSSVQTDVNTIFKGKTYSQLIALQKQIRAKIKAGG-SIDVGYWETLLQQLKAIMAKTRLKERHQXXXXXXXXXXXXXSTVDDDAELPSTKRYKARLGR-LDEEDNNDEPSGGELKETNKESDNEAGPSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAELNDKAMKEYEEQCYSPKLIHFGDVD-EEKWLKPAEDSLKLSYLREKVK 1598
G +GYTNTDNPFGD NL F+WNK +++G ++ +K+ R+K QE+ R EL+KVK+ R EREREKA R++E+ ++QREKEA F WE+QED FHLQQA+LRS IRI +GRAKPIDLLA YI+ E+++L ++MHEPY L GL++ D+EDLL DI VY+E++Q KN DFW D+T I +DE++KL+K+ RR+ +N+SV +DV ++FKGKTY+QL + + I KI+AGG ++D+GYWE+LLQQL+A MA+ RL+ERHQ +L+ KL ++K E V+ + P K+ R L+ ED P G +E GP+ A + EG+ + E E +L +++ +Y+ YSP+L+ ++ + L+P ED +L R++++
Sbjct: 188 GEEYMGYTNTDNPFGDNNLLGTFIWNKALEKKGISHLEEKELKERNKRIQEDNRLELQKVKQLRLEREREKAMREQELEMLQREKEAEHFKTWEEQEDNFHLQQAKLRSKIRIRDGRAKPIDLLAKYISAEDDDLAVEMHEPYTFLNGLTVADMEDLLEDIQVYMELEQGKNADFWRDMTTITEDEISKLRKLEASGKGPGERREGVNASVSSDVQSVFKGKTYNQLQVIFQGIEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLYKLKQEQGVESEPLFPILKQEPQSPSRSLEPEDAAPTPPG---------PSSEGGPAEA--EVDGATPTEGDGDGDGEGEGEGEAVLMEEDLIQQSLDDYDAGRYSPRLLTAHELPLDAHVLEPDEDLQRLQLSRQQLQ 593 The following BLAST results are available for this feature:
BLAST of TCONS_00028556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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