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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028572 ID=TCONS_00028572|Name=TCONS_00028572|organism=Clytia hemisphaerica|type=transcript|length=974bp
GCAGTATATGATTGAACCAGAGACCGAAGAAGATGAACTTTTTATCACCC
TACCACAACTGGTAACTTGCAATAATAGAACTATCGATGTTTATATCGCA
AACCCACATAATAACCCAACAAAAGACCTTGTACTCACAATGTCTGCATC
TCCGATAATAACCGCCAAGGAGTGTACGACAAAACCAATATCCACTAAAT
ACAAGCCGTATCCATTATCTCACgaacacaaagaaaaattagataAACTA
TTGTTAGAATACAGTGACGTTTTAGCCGATAAAAGTGACCCATTAGGAAC
AACCGATAGAGTACGCCACATCATTGACACTGGTAACGAGAAACCTATCC
GGCAAAAACCGTACCGTTTATCGCCAAGTCAAAAGGACGCACTCGACAAA
GAAATTGACCACCTTTTGGAGAAAGAAATAATACGCCCAAGTAACTCACC
CTGGTCCAGTCCAGTAGTTATGGTGCACAAACCAGACGGCTCCATCCGCG
TCTGTATCGATTATCGAAAGCTGAATCATATCACCAAAAAGGATGCCCAT
CCACTCCCAAAAACAGAAGAGATATTAGACCAGTTACATGgcgcaaaaat
attttcaacaattGACTTGTTATCCGGTTTTTACCAAATTGCAATGGACG
AGAAGGATATTCAAAAGACGTCCTTCGCTACACATCGTGGATTGTTTGAA
TACTTGCGCATGCCGATGGGCTTATGTAACAGTCCAGCAATTTGAGCGTC
TTGTAGAGCAAGTTTTCGCTCTAGAACTTTGGGTGTTTATGCTACTCTAC
ATTGATGACCTCATTGTCTATTCAAAGACACCAGATGAACATTTGGAACA
TTTAAAAACAGTTTTACAAAGACTTAGGGACAACAAACTACAAGCAAAAT
TAGCAAAGTGTCGTTTTAGCATGTCCTAAGTATGCTTTCTTGGACATCTC
GTAAATAAAGATGGTATCTTACCG Run BLAST on NCBI protein sequence of TCONS_00028572-protein >TCONS_00028572-protein ID=TCONS_00028572-protein|Name=TCONS_00028572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
QYMIEPETEEDELFITLPQLVTCNNRTIDVYIANPHNNPTKDLVLTMSAS
PIITAKECTTKPISTKYKPYPLSHEHKEKLDKLLLEYSDVLADKSDPLGT
TDRVRHIIDTGNEKPIRQKPYRLSPSQKDALDKEIDHLLEKEIIRPSNSP
WSSPVVMVHKPDGSIRVCIDYRKLNHITKKDAHPLPKTEEILDQLHGAKI
FSTIDLLSGFYQIAMDEKDIQKTSFATHRGLFEYLRMPMGLCNSPAI Run BLAST on NCBI transcript from alignment at sc0000691:245662..246635 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028572 ID=TCONS_00028572|Name=TCONS_00028572|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at sc0000691:245662..246635 (Clytia hemisphaerica)
CGGTAAGATACCATCTTTATTTACGAGATGTCCAAGAAAGCATACTTAGG
ACATGCTAAAACGACACTTTGCTAATTTTGCTTGTAGTTTGTTGTCCCTA
AGTCTTTGTAAAACTGTTTTTAAATGTTCCAAATGTTCATCTGGTGTCTT
TGAATAGACAATGAGGTCATCAATGTAGAGTAGCATAAACACCCAAAGTT
CTAGAGCGAAAACTTGCTCTACAAGACGCTCAAATTGCTGGACTGTTACA
TAAGCCCATCGGCATGCGCAAGTATTCAAACAATCCACGATGTGTAGCGA
AGGACGTCTTTTGAATATCCTTCTCGTCCATTGCAATTTGGTAAAAACCG
GATAACAAGTCaattgttgaaaatatttttgcgcCATGTAACTGGTCTAA
TATCTCTTCTGTTTTTGGGAGTGGATGGGCATCCTTTTTGGTGATATGAT
TCAGCTTTCGATAATCGATACAGACGCGGATGGAGCCGTCTGGTTTGTGC
ACCATAACTACTGGACTGGACCAGGGTGAGTTACTTGGGCGTATTATTTC
TTTCTCCAAAAGGTGGTCAATTTCTTTGTCGAGTGCGTCCTTTTGACTTG
GCGATAAACGGTACGGTTTTTGCCGGATAGGTTTCTCGTTACCAGTGTCA
ATGATGTGGCGTACTCTATCGGTTGTTCCTAATGGGTCACTTTTATCGGC
TAAAACGTCACTGTATTCTAACAATAGTTtatctaatttttctttgtgtt
cGTGAGATAATGGATACGGCTTGTATTTAGTGGATATTGGTTTTGTCGTA
CACTCCTTGGCGGTTATTATCGGAGATGCAGACATTGTGAGTACAAGGTC
TTTTGTTGGGTTATTATGTGGGTTTGCGATATAAACATCGATAGTTCTAT
TATTGCAAGTTACCAGTTGTGGTAGGGTGATAAAAAGTTCATCTTCTTCG
GTCTCTGGTTCAATCATATACTGC Coding sequence (CDS) from alignment at sc0000691:245662..246635 >TCONS_00028572 ID=TCONS_00028572|Name=TCONS_00028572|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000691:245662..246635 (Clytia hemisphaerica)
TCAAATTGCTGGACTGTTACATAAGCCCATCGGCATGCGCAAGTATTCAA
ACAATCCACGATGTGTAGCGAAGGACGTCTTTTGAATATCCTTCTCGTCC
ATTGCAATTTGGTAAAAACCGGATAACAAGTCaattgttgaaaatatttt
tgcgcCATGTAACTGGTCTAATATCTCTTCTGTTTTTGGGAGTGGATGGG
CATCCTTTTTGGTGATATGATTCAGCTTTCGATAATCGATACAGACGCGG
ATGGAGCCGTCTGGTTTGTGCACCATAACTACTGGACTGGACCAGGGTGA
GTTACTTGGGCGTATTATTTCTTTCTCCAAAAGGTGGTCAATTTCTTTGT
CGAGTGCGTCCTTTTGACTTGGCGATAAACGGTACGGTTTTTGCCGGATA
GGTTTCTCGTTACCAGTGTCAATGATGTGGCGTACTCTATCGGTTGTTCC
TAATGGGTCACTTTTATCGGCTAAAACGTCACTGTATTCTAACAATAGTT
tatctaatttttctttgtgttcGTGAGATAATGGATACGGCTTGTATTTA
GTGGATATTGGTTTTGTCGTACACTCCTTGGCGGTTATTATCGGAGATGC
AGACATTGTGAGTACAAGGTCTTTTGTTGGGTTATTATGTGGGTTTGCGA
TATAAACATCGATAGTTCTATTATTGCAAGTTACCAGTTGTGGTAGGGTG
ATAAAAAGTTCATCTTCTTCGGTCTCTGGTTCAATCATATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028572-exon-sc0000691-1491911889:245662..246635 | TCONS_00028572-exon-sc0000691-1491911889:245662..246635 | Clytia hemisphaerica | exon |
| TCONS_00028572-exon-sc0000691-1510915933:245662..246635 | TCONS_00028572-exon-sc0000691-1510915933:245662..246635 | Clytia hemisphaerica | exon |
| TCONS_00028572-exon-sc0000691-1575043694:245662..246635 | TCONS_00028572-exon-sc0000691-1575043694:245662..246635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:245662..246635 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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