TCONS_00028735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028735
Unique NameTCONS_00028735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028735 ID=TCONS_00028735|Name=TCONS_00028735|organism=Clytia hemisphaerica|type=transcript|length=1904bp
ATGATTTTTAGCAACTTTTGATAAACAAATATTCAATTTGGTTTCAATTA
GCACAGCCACTGATTTTGTTTGATTGCGATTGTATAGCTAGACACAATTA
AGATTGATCATTCTGTTTTATTCATTTGTAAGTTTCCTGGAAGAAATTGT
TACTTGAGGAGCGTTTTGTACATGGGAATACATTGCAACCTGGTGCTATA
TCTAATCTACTCAGTCTTggtttcaaaatattatttacaGGAGGATCGAT
CATATTTAAATTATATCAAACTATAGCATGAAACACTACCGACCTTGGTG
CATCGATTGTCTCTTTTTAAGTCTGTtcataaaatctttatttttcgtaa
CATAACAGAAATATGAAAAGAAATGAAACCAAAAAATTTCCATGCACTTA
CCCAAATTGCACGTGGTCATTTCCTACCAATTACAAGCTTGATCGACATA
TTAAGTCTCATACTGGTGAAAAAGCATGGATTTGTAACTTTTGTGcaaaa
tcttttgcaaatgggTATAATTTAAAGGAACATTCAAAACTTCATACCAG
ACTTACAGCCAAGCAAAATAATGTTGTAAGAGAGGAAACTGTTGAAACAA
CAACAAATATACATTTTGATTGCAAAGATGTATCAATCCCATGCCCAAAG
AAAAGATGTTTGAGAAAATTTACTACCGAAAAAGAACTTGCAGTGCATCT
TACGAATCATGATTTGCAATACCAATGCTCTTTTGATGGCTGccataaaa
gattttcaaaacctAGCATTTTAAAGCAACACGAAGCAAATCATACACAG
GATAGAccatttaaatgtgattttgaATCATGCACAAAGAGTTTTGCTAC
CAAACAGAAACTAAAACGACATATGGGGATTCATGAGAACAAAAGAAATT
TTTCATGTCCTGTAGAAGGTTGTGATAAAGCATTTAATTGCAAGGAATAC
TTAGATTCTCATTTACGAACACACCAGGATACAAAACCATTGAAATGTCC
TATTGAAGATTGTTTCAAAAATTTCTCCTGTACATCAACATTGAAAGTGC
ACTTAATGAAACATGCCAATAATAGACCATTCAAATGTACACATACAGGC
TGTGAAAAGACGTATTTGACAGCCAGCAATTTACGCTCTCATGAGAAGGT
TCACAAGCGTAAGTTATTGGCAACTTCAGATGACAGTGATGATAGTGAAG
CTGAAGAAACTATAGATACAAACGAACTCATGAACTTACCTGCAATGGAT
ATCTCAATCATGTCTAAAGAGGCTCTTGTCGCTGCAGCTTTTGGAGAGAT
CGCATGTAATGAGTATATGAATATTGATTCAAGTCAAGTACCAAAAGATG
TTGACAATACTATCGATATCAATGTCTTGAATGAATCTgataaagaaaaa
ctaaaagatCTTCAAGAAGAGTTTGTACGTAATATTTACGCATCTTCGGT
AAACACTGATCACTCTTTCCTACCAAGTTATTTAGTTCCACCAGGATCAA
GCAATAAATTAAACATTGAGAGCAAAGAGAAACCTACTATGAGTACCCTA
GATGAGCCAGTGACTTTAGAACCATCTATGGAATTGAGTACTGGACATTT
GGAGATTGATGGAGCATGTTTTCAAGCTTCTTCCTGTATGCCAGATCATA
TATATTCCAATAAATTGTATGAGAATAGTAGTACAGTGAATTTACAAGAT
ATTCACTGAAGTTTTCTCAACTTTGTTGtgttttaatgaatttttctttt
gtagATATGATTTACTTTTCTATgaaaacaatttatttattGTAAATCCT
TAATCTTATTTATCCCATGTTTCTATCATTTGGCTGTTAGATGAGGGTNT
AAATCCTTAATCTTATTTATCCCATGTTTCTATCATTTGGCTGTTAGATG
AGGG
Run BLAST on NCBI

protein sequence of TCONS_00028735-protein

>TCONS_00028735-protein ID=TCONS_00028735-protein|Name=TCONS_00028735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MKRNETKKFPCTYPNCTWSFPTNYKLDRHIKSHTGEKAWICNFCAKSFAN
GYNLKEHSKLHTRLTAKQNNVVREETVETTTNIHFDCKDVSIPCPKKRCL
RKFTTEKELAVHLTNHDLQYQCSFDGCHKRFSKPSILKQHEANHTQDRPF
KCDFESCTKSFATKQKLKRHMGIHENKRNFSCPVEGCDKAFNCKEYLDSH
LRTHQDTKPLKCPIEDCFKNFSCTSTLKVHLMKHANNRPFKCTHTGCEKT
YLTASNLRSHEKVHKRKLLATSDDSDDSEAEETIDTNELMNLPAMDISIM
SKEALVAAAFGEIACNEYMNIDSSQVPKDVDNTIDINVLNESDKEKLKDL
QEEFVRNIYASSVNTDHSFLPSYLVPPGSSNKLNIESKEKPTMSTLDEPV
TLEPSMELSTGHLEIDGACFQASSCMPDHIYSNKLYENSSTVNLQDIH
Run BLAST on NCBI

transcript from alignment at sc0000700:102539..104442

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028735 ID=TCONS_00028735|Name=TCONS_00028735|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at sc0000700:102539..104442 (Clytia hemisphaerica)
CCCTCATCTAACAGCCAAATGATAGAAACATGGGATAAATAAGATTAAGG
ATTTANACCCTCATCTAACAGCCAAATGATAGAAACATGGGATAAATAAG
ATTAAGGATTTACaataaataaattgttttcATAGAAAAGTAAATCATAT
ctacaaaagaaaaattcattaaaacaCAACAAAGTTGAGAAAACTTCAGT
GAATATCTTGTAAATTCACTGTACTACTATTCTCATACAATTTATTGGAA
TATATATGATCTGGCATACAGGAAGAAGCTTGAAAACATGCTCCATCAAT
CTCCAAATGTCCAGTACTCAATTCCATAGATGGTTCTAAAGTCACTGGCT
CATCTAGGGTACTCATAGTAGGTTTCTCTTTGCTCTCAATGTTTAATTTA
TTGCTTGATCCTGGTGGAACTAAATAACTTGGTAGGAAAGAGTGATCAGT
GTTTACCGAAGATGCGTAAATATTACGTACAAACTCTTCTTGAAGatctt
ttagtttttctttatcAGATTCATTCAAGACATTGATATCGATAGTATTG
TCAACATCTTTTGGTACTTGACTTGAATCAATATTCATATACTCATTACA
TGCGATCTCTCCAAAAGCTGCAGCGACAAGAGCCTCTTTAGACATGATTG
AGATATCCATTGCAGGTAAGTTCATGAGTTCGTTTGTATCTATAGTTTCT
TCAGCTTCACTATCATCACTGTCATCTGAAGTTGCCAATAACTTACGCTT
GTGAACCTTCTCATGAGAGCGTAAATTGCTGGCTGTCAAATACGTCTTTT
CACAGCCTGTATGTGTACATTTGAATGGTCTATTATTGGCATGTTTCATT
AAGTGCACTTTCAATGTTGATGTACAGGAGAAATTTTTGAAACAATCTTC
AATAGGACATTTCAATGGTTTTGTATCCTGGTGTGTTCGTAAATGAGAAT
CTAAGTATTCCTTGCAATTAAATGCTTTATCACAACCTTCTACAGGACAT
GAAAAATTTCTTTTGTTCTCATGAATCCCCATATGTCGTTTTAGTTTCTG
TTTGGTAGCAAAACTCTTTGTGCATGATtcaaaatcacatttaaatggTC
TATCCTGTGTATGATTTGCTTCGTGTTGCTTTAAAATGCTaggttttgaa
aatcttttatggCAGCCATCAAAAGAGCATTGGTATTGCAAATCATGATT
CGTAAGATGCACTGCAAGTTCTTTTTCGGTAGTAAATTTTCTCAAACATC
TTTTCTTTGGGCATGGGATTGATACATCTTTGCAATCAAAATGTATATTT
GTTGTTGTTTCAACAGTTTCCTCTCTTACAACATTATTTTGCTTGGCTGT
AAGTCTGGTATGAAGTTTTGAATGTTCCTTTAAATTATAcccatttgcaa
aagattttgCACAAAAGTTACAAATCCATGCTTTTTCACCAGTATGAGAC
TTAATATGTCGATCAAGCTTGTAATTGGTAGGAAATGACCACGTGCAATT
TGGGTAAGTGCATGGAAATTTTTTGGTTTCATTTCTTTTCATATTTCTGT
TATGttacgaaaaataaagattttatgaACAGACTTAAAAAGAGACAATC
GATGCACCAAGGTCGGTAGTGTTTCATGCTATAGTTTGATATAATTTAAA
TATGATCGATCCTCCtgtaaataatattttgaaaccAAGACTGAGTAGAT
TAGATATAGCACCAGGTTGCAATGTATTCCCATGTACAAAACGCTCCTCA
AGTAACAATTTCTTCCAGGAAACTTACAAATGAATAAAACAGAATGATCA
ATCTTAATTGTGTCTAGCTATACAATCGCAATCAAACAAAATCAGTGGCT
GTGCTAATTGAAACCAAATTGAATATTTGTTTATCAAAAGTTGCTAAAAA
TCAT

Coding sequence (CDS) from alignment at sc0000700:102539..104442

>TCONS_00028735 ID=TCONS_00028735|Name=TCONS_00028735|organism=Clytia hemisphaerica|type=CDS|length=1347bp|location=Sequence derived from alignment at sc0000700:102539..104442 (Clytia hemisphaerica)
TCAGTGAATATCTTGTAAATTCACTGTACTACTATTCTCATACAATTTAT
TGGAATATATATGATCTGGCATACAGGAAGAAGCTTGAAAACATGCTCCA
TCAATCTCCAAATGTCCAGTACTCAATTCCATAGATGGTTCTAAAGTCAC
TGGCTCATCTAGGGTACTCATAGTAGGTTTCTCTTTGCTCTCAATGTTTA
ATTTATTGCTTGATCCTGGTGGAACTAAATAACTTGGTAGGAAAGAGTGA
TCAGTGTTTACCGAAGATGCGTAAATATTACGTACAAACTCTTCTTGAAG
atcttttagtttttctttatcAGATTCATTCAAGACATTGATATCGATAG
TATTGTCAACATCTTTTGGTACTTGACTTGAATCAATATTCATATACTCA
TTACATGCGATCTCTCCAAAAGCTGCAGCGACAAGAGCCTCTTTAGACAT
GATTGAGATATCCATTGCAGGTAAGTTCATGAGTTCGTTTGTATCTATAG
TTTCTTCAGCTTCACTATCATCACTGTCATCTGAAGTTGCCAATAACTTA
CGCTTGTGAACCTTCTCATGAGAGCGTAAATTGCTGGCTGTCAAATACGT
CTTTTCACAGCCTGTATGTGTACATTTGAATGGTCTATTATTGGCATGTT
TCATTAAGTGCACTTTCAATGTTGATGTACAGGAGAAATTTTTGAAACAA
TCTTCAATAGGACATTTCAATGGTTTTGTATCCTGGTGTGTTCGTAAATG
AGAATCTAAGTATTCCTTGCAATTAAATGCTTTATCACAACCTTCTACAG
GACATGAAAAATTTCTTTTGTTCTCATGAATCCCCATATGTCGTTTTAGT
TTCTGTTTGGTAGCAAAACTCTTTGTGCATGATtcaaaatcacatttaaa
tggTCTATCCTGTGTATGATTTGCTTCGTGTTGCTTTAAAATGCTaggtt
ttgaaaatcttttatggCAGCCATCAAAAGAGCATTGGTATTGCAAATCA
TGATTCGTAAGATGCACTGCAAGTTCTTTTTCGGTAGTAAATTTTCTCAA
ACATCTTTTCTTTGGGCATGGGATTGATACATCTTTGCAATCAAAATGTA
TATTTGTTGTTGTTTCAACAGTTTCCTCTCTTACAACATTATTTTGCTTG
GCTGTAAGTCTGGTATGAAGTTTTGAATGTTCCTTTAAATTATAcccatt
tgcaaaagattttgCACAAAAGTTACAAATCCATGCTTTTTCACCAGTAT
GAGACTTAATATGTCGATCAAGCTTGTAATTGGTAGGAAATGACCACGTG
CAATTTGGGTAAGTGCATGGAAATTTTTTGGTTTCATTTCTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016298XLOC_016298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028735-proteinTCONS_00028735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028735-exon-sc0000700-1491911889:102539..104442TCONS_00028735-exon-sc0000700-1491911889:102539..104442Clytia hemisphaericaexon
TCONS_00028735-exon-sc0000700-1510915933:102539..104442TCONS_00028735-exon-sc0000700-1510915933:102539..104442Clytia hemisphaericaexon
TCONS_00028735-exon-sc0000700-1575043694:102539..104442TCONS_00028735-exon-sc0000700-1575043694:102539..104442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:102539..104442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.5753	29.6774	14.4801	9.94667	8.72195	6.33458	7.61549	8.56552	3.91564	3.0805	5.30143	2.70432	3.2017	3.41174	2.84057	3.21417	3.84961	4.12288	2.46974	2.70082	4.0879	3.37587	20.927	20.1384	6.20241	8.16286	3.70234	3.58368	10.036	11.1009
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00028735 vs. Swiss-Prot (Human)
Match: ZXDC (Zinc finger protein ZXDC OS=Homo sapiens GN=ZXDC PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.883e-38
Identity = 106/355 (29.86%), Postives = 163/355 (45.92%), Query Frame = 3 
Query:  381 KKFPCTYPNCTWSFPTNYKLDRHIKSHTGEKAWIC--NFCAKSFANGYNLKEHSKLHTRLTAKQ-----XXXXXXXXXXXXXXIHFDCKDVSIPCPKKRCLRKFTTEKELAVHLTNHDLQ---YQCSFDGCHKRFSKPSILKQHEANHTQDRPFKCDFESCTKSFATKQKLKRHMGIHENKRNFSCPVEGCDKAFNCKEYLDSHLRTHQDTKPLKCPIEDCFKNFSCTSTLKVHLMKHANNRPF---KCTHTGCEKTYLTASNLRSHE-KVHKRK-----LLXXXXXXXXXXXXXXXXXNELMNLPAMDISIMSKEALVAAAFGEIACNEYMN-----IDSSQVPKDVDNTIDIN 1373
            + F C    C W+F T+YKL RH++SH   + + C    C K F   YNLK H K H + +  +             + +    HF+  +    C    C + F T   L  H   H  +   + CSF GC K++ K   LK H  +HT +RPF CD +SC  +F +  KL RH   H++ R F+CPVEGC K+F   E+L  H  TH  TKP +CP+E C   FS  S+L +H  KH  +      +C  + C + + +  ++++H  + H R+      L        S    +   +EL N   MD++ +  +    A+      +E +N     ID + V   +   +  N
Sbjct:  206 RPFKCPLEGCGWAFTTSYKLKRHLQSHDKLRPFGCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEVCAERFPTHAKLSSHQRSHFE-PERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFICDSDSCGWTFTSMSKLLRHRRKHDDDRRFTCPVEGCGKSFTRAEHLKGHSITHLGTKPFECPVEGCCARFSARSSLYIHSKKHVQDVGAPKSRCPVSTCNRLFTSKHSMKAHMVRQHSRRQDLLPQLEAPSSLTPSSELSSPGQSELTN---MDLAALFSDTPANASGSAGGSDEALNSGILTIDVTSVSSSLGGNLPAN 556

HSP 2 Score: 105.145 bits (261), Expect = 2.755e-23
Identity = 62/175 (35.43%), Postives = 80/175 (45.71%), Query Frame = 3 
Query:  642 CPKKRCLRKFTTEKELAVHLTNHDLQYQCSFDGCHKRFSKPSILKQHEANHTQDRPFKCDFESCTKSFATKQKLKRHMGIHENKRNFSCPVEGCDKAFNCKEYLDSHLRTHQDTKPLKCPIEDCFKNFSCTSTLKVHLMKH-ANNRPFKCTHTGCEKTYLTASNLRSHEKVHKRK 1163
            CP+ +C   F  + +L VHL  H         G   R                 RPFKC  E C  +F T  KLKRH+  H+  R F CPV GC K F     L +H++ H+     KC  E C + F   + L  H   H    RP+KC   GCEKT++T S L SH + H R+
Sbjct:  177 CPEPQCALAFAKKHQLKVHLLTH--------GGGQGR-----------------RPFKCPLEGCGWAFTTSYKLKRHLQSHDKLRPFGCPVGGCGKKFTTVYNLKAHMKGHEQESLFKC--EVCAERFPTHAKLSSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFRE 324
The following BLAST results are available for this feature:
BLAST of TCONS_00028735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZXDC3.883e-3829.86Zinc finger protein ZXDC OS=Homo sapiens GN=ZXDC P... [more]
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