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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028953 ID=TCONS_00028953|Name=TCONS_00028953|organism=Clytia hemisphaerica|type=transcript|length=1272bp
ACTCCAAGGAAACGTCCACagaaaagaaagtttgaaacaTCAGAACTTCA
CGACCTATGTGGCTATGTATCATTTGTATCGGgtatcaaaataccaaaaa
atcctGAAAAGTCAAAAGCACCCTACTTCGAGATGTATGTTGCACTTGAG
AACAAGGAAGAAAGAATTGCCTCATGGAACATTGATGATCAACCAACCCT
TTTAAACAAACTGCATCAAGGAATCAACATAACTGGattatcaaaatcat
cagaTGGTCAAGGTTTTTCCTTCATTAGTCAAACTAAGTTTATGGATAAA
AGGCCAAATTTTGCATATGTACAAGTTAATGTCGAACCAACACCTTTAAA
TGAAGCATTGCAACAGCCTCTTTACTCCAGAGTTACTCTAGAGGTACGTA
TCACTAAATTGCACCAAGGTGGTATTTCCTATGANATCATCAGATGGTCA
AGGTTTTTCCTTCATTAGTCAAACCAAGTTTATGGATAAAAGGCCAAATT
TTGCATATGTACAAGTTAATGTCGAACCAACACCTTTAAATGAAGCATTG
CAACAGCCTCTTTACTCCAGAGTTACTCTAGAGGTACGTATCACTAAATT
GCACCATGGTGGTATTTCCTACGATGGGCTTGCATCCAGGTCAGCTGAAG
TTATTGATAACAGTGTCAACCAGCCTCGCGAAATAACACTTTACGGTAAT
CTTACAACAATGATTGAATTAAATAGTGCCTACAGGCTTACATACATGAC
TTTGAACAAGTTTAATGGTGTGCGTGTGTTCAAAGCATCTGACCTTACAA
GTTTCGCTCCTTCTATCAATGAGATTGCGGCTCCAATGGCAGAAACAAAC
ATCTTCATTGGTCAGGTCCACAGTGTTGTGATGTCATCATTGGCCACATT
CTACAAATGTCCTCACTGTGGGGAAACATTAGATAGTAATGGCTCCTCAG
CAATGTGCCCTAATACAAACTGTGGCGTAGGTCTCTCCACGAATGCAATT
GTTAGTgttaaagaaatcaaatttaCTGTTCGCAGTGATAGCAATATCGt
aagaaatttcaaatgtaGCCATCAACTTGTTGAAGCAATTGATCAATCAA
TCAGTCGAAAACAAAAtggtatttttccaaaaatttattgacactaaagT
TGTAGTAACTTTTGAAGAAGCAAGTGGTGATGTTGTATCAATTGAAGAGA
CCTTCTTCTAATTTAATTTACCAGATTTTATTTACCAGATTTTATTTGAT
TCCTGATTTGATTTATTCCAGC Run BLAST on NCBI transcript from alignment at sc0000716:125066..127304- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028953 ID=TCONS_00028953|Name=TCONS_00028953|organism=Clytia hemisphaerica|type=transcript|length=2239bp|location=Sequence derived from alignment at sc0000716:125066..127304- (Clytia hemisphaerica)
ACTCCAAGGAAACGTCCACAGAAAAGAAAGTTTGAAACATCAGGTATTAA
TTCACAATTCAACTAATTAAGTCAGATGCCTTTCAAAACTTGCCTAGAAA
AGCTGAATCAACATTTGNCAACTAATTAATTCAAATGCCTTTCAAAACTT
GCCTAGAAAAGCTGAATCAACATTTGAAACACATTCTTGCAGATTCTAGC
AGATTCTTGCATTACTTCCTGCTGATGAGAATCTTGCTAGATGTTAGTCA
GCAAGTCCCCGTGGGTATCAGGTTACTGATGTTTGAAATAAACTTTTTCG
ACAATTTTGAGGTATCCATAGCAACGTAATTTCTAAATGACATGTCATCA
TTTTATAATGAATTAAAATTGCAAATGACCAATTAACTAATTTTAAGATA
ATAAACAAGAGCAGCCATTTGCTAGGAAGTATGAAATATCTGTTTTGGGG
TCCTTTTTTCCTGGAAAAATATCAACTGTTCTAGGAAAAAATGGGACTCC
TAGAAAATGTATACTTGTTCAATCAATAAAAATAATACGGTGCTGCTGGA
AAAGTATAACAGCTTTTCTCTGAGAAAGTTATGTTGCCCCTGGAAATATT
AGTGTTTTTGCAACTTAGCTCCTCAATTTTTGAACAGATTGTCTGCTGGA
AAATTGTACGTGTTTTTCATTAAAATGTGCTCCTGGATTTTTAGAACAGA
GGTATTAGGCTTAGATGCCCTCCGGATCATTGCATACCATTTAGAAAATG
GATGGCAAATGTATATAAATAATAAAGTTTCGAACACTTTGACATAGGCA
CCACCAAATTTTTTATCTTGACATGATTTTTCATATTGTTTGAAGCAAAT
AGTACGCTGTATATGAAATTGATATAGTCAAAAGTTCATTCAAACAAAAA
CATCTCAAAAAAGCAAGAAAACCAACTTATTTAAAGGATTTTTTCCAGGA
GCAATTTGATCAATGAGCAGAGATGTTTATTTTCATTTAAATTTTCTTTG
TTTGCTTTAGAACTTCACGACCTATGTGGCTATGTATCATTTGTATCGGG
TATCAAAATACCAAAAAATCCTGAAAAGTCAAAAGCACCCTACTTCGAGA
TGTATGTTGCACTTGAGAACAAGGAAGAAAGAATTGCCTCATGGAACATT
GATGATCAACCAACCCTTTTAAACAAACTGCATCAAGGAATCAACATAAC
TGGATTATCAAAATCATCAGATGGTCAAGGTTTTTCCTTCATTAGTCAAA
CTAAGTTTATGGATAAAAGGCCAAATTTTGCATATGTACAAGTTAATGTC
GAACCAACACCTTTAAATGAAGCATTGCAACAGCCTCTTTACTCCAGAGT
TACTCTAGAGGTACGTATCACTAAATTGCACCAAGGTGGTATTTCCTATG
ANATCATCAGATGGTCAAGGTTTTTCCTTCATTAGTCAAACCAAGTTTAT
GGATAAAAGGCCAAATTTTGCATATGTACAAGTTAATGTCGAACCAACAC
CTTTAAATGAAGCATTGCAACAGCCTCTTTACTCCAGAGTTACTCTAGAG
GTACGTATCACTAAATTGCACCATGGTGGTATTTCCTACGATGGGCTTGC
ATCCAGGTCAGCTGAAGTTATTGATAACAGTGTCAACCAGCCTCGCGAAA
TAACACTTTACGGTAATCTTACAACAATGATTGAATTAAATAGTGCCTAC
AGGCTTACATACATGACTTTGAACAAGTTTAATGGTGTGCGTGTGTTCAA
AGCATCTGACCTTACAAGTTTCGCTCCTTCTATCAATGAGATTGCGGCTC
CAATGGCAGAAACAAACATCTTCATTGGTCAGGTCCACAGTGTTGTGATG
TCATCATTGGCCACATTCTACAAATGTCCTCACTGTGGGGAAACATTAGA
TAGTAATGGCTCCTCAGCAATGTGCCCTAATACAAACTGTGGCGTAGGTC
TCTCCACGAATGCAATTGTTAGTGTTAAAGAAATCAAATTTACTGTTCGC
AGTGATAGCAATATCGTAAGAAATTTCAAATGTAGCCATCAACTTGTTGA
AGCAATTGATCAATCAATCAGTCGAAAACAAAATGGTATTTTTCCAAAAA
TTTATTGACACTAAAGTTGTAGTAACTTTTGAAGAAGCAAGTGGTGATGT
TGTATCAATTGAAGAGACCTTCTTCTAATTTAATTTACCAGATTTTATTT
ACCAGATTTTATTTGATTCCTGATTTGATTTATTCCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028953-exon-sc0000716-1575043694:127262..127304 | TCONS_00028953-exon-sc0000716-1575043694:127262..127304 | Clytia hemisphaerica | exon |
| TCONS_00028953-exon-sc0000716-1575043694:125066..126294 | TCONS_00028953-exon-sc0000716-1575043694:125066..126294 | Clytia hemisphaerica | exon |
| TCONS_00028953-exon-sc0000716-1510915933:127262..127304 | TCONS_00028953-exon-sc0000716-1510915933:127262..127304 | Clytia hemisphaerica | exon |
| TCONS_00028953-exon-sc0000716-1510915933:125066..126294 | TCONS_00028953-exon-sc0000716-1510915933:125066..126294 | Clytia hemisphaerica | exon |
| TCONS_00028953-exon-sc0000716-1491911889:127262..127304 | TCONS_00028953-exon-sc0000716-1491911889:127262..127304 | Clytia hemisphaerica | exon |
| TCONS_00028953-exon-sc0000716-1491911889:125066..126294 | TCONS_00028953-exon-sc0000716-1491911889:125066..126294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000716 | supercontig | sc0000716:125066..127304 - |
Blast
The following BLAST results are available for this feature:
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