TCONS_00042863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042863
Unique NameTCONS_00042863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042863 ID=TCONS_00042863|Name=TCONS_00042863|organism=Clytia hemisphaerica|type=transcript|length=633bp
TTAAGATATTTATACTTAAAGTATGTGAAAAATAATGGGAGAGCCGTTAA
AAACAAGTTTATCTAGCTTGCATTCTTGTCTGAAATTGCAAGATTCAGCA
AGAGGTGGGAAAGCTACTCTGATTGCAAAGGACATATTTGGTTTCTCTCT
GGATGTTTCTCCACAAGAAGTTGCTTACTGCTCAAGTTTACTCTTCAATG
AACAAAATGGACttgtaaagtttttgaaacttgCAGTTGGGCTCAGAGAA
TTTGAAAATGTTAAAGCAGACATACAAAGATTCTTTGTGGAGTTCATCAG
TTCCAACTCAAAACGCTACACTATTGATCAACTTAAGAACTTGAAGGATC
AAAGTCTATCAATGATGATCTGCGATCAATCAGTGAAAGTGCGAACAGAA
AGCATCAATGTGATTTCAAAGATTGTTACCATTGGTGATTTTGATGAAAG
CTTTGGAATCAAAGATTTGATTGAAAAtGAAAAGTGCCATCCATTCATTG
ATTGGTTTGTTATGTGAAAAGTTTCCTGATCTGATTGGTGAAGAAAAGCT
GaggagaattccaagaatttatTTACCAACACTCAAACAAGAAATGGAGG
TTGGTATTTTTCTTATGTACCAATTCATCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00042863-protein

>TCONS_00042863-protein ID=TCONS_00042863-protein|Name=TCONS_00042863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MGEPLKTSLSSLHSCLKLQDSARGGKATLIAKDIFGFSLDVSPQEVAYCS
SLLFNEQNGLVKFLKLAVGLREFENVKADIQRFFVEFISSNSKRYTIDQL
KNLKDQSLSMMICDQSVKVRTESINVISKIVTIGDFDESFGIKDLIENEK
CHPFIDWFVM
Run BLAST on NCBI

transcript from alignment at sc0003739:5646..9502-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042863 ID=TCONS_00042863|Name=TCONS_00042863|organism=Clytia hemisphaerica|type=transcript|length=3857bp|location=Sequence derived from alignment at sc0003739:5646..9502- (Clytia hemisphaerica)
TTAAGATATTTATACTTAAAGTATGTGAAAAATAATGGGAGAGCCGTTAA
AAACAAGTTTATCTAGCTTGCATTCTTGTCTGAAATTGCAAGATTCAGCA
AGAGGTGGGAAAGCTACTCTGATTGCAAAGGACATATTTGGTTTCTCTCT
GGATGTTTCTCCACAAGAAGTTGGTAAGACCGCTAATTACACAGAAAACA
CTAAATATTTATTATATTTCTAGTATTACAGTTTTTTTTTACTCAGGCAG
CAAGTTATAGCTGACTTTTTTTCAAATTAACTTAATCCTACTACAATTAT
ATAGTCCTTTATGAGATGGCACTACCATTATCGTTTGACGTTTACTCCAG
TTCTTTTTCTTGTGGATTTCAATGGTTATGCAGGGTTATGACTGAATTTC
TCTGAAATAAACAAAAGGAAAAACTAAAATGGTAATGTCATCTCCTAAAG
GACTATTTACCTGCTATACTGTCTTTGCATATCCTAACCTCAGGCCAGAC
ATTAAAGAGTATCTAAATATTTTGCCAGATACTGATGTTTTTATCTTGTT
TTTTTTATTATACAGCTTACTGCTCAAGTTTACTCTTCAATGAACAAAAT
GGACTTGTAAAGTTTTTGAAACTTGCAGTTGGGCTCAGAGAAGTATTTAA
AGATGATTAGAAATTATTGAGTTTTTTGTGATTTTCCCTTTACTTTACTT
TTATTGGCATTAAGAATTTGTTTTTTTTTATAATTGAAAAAGTTTTGTTG
TTTTTGTTCTAATTAACCTTATTTTGTTAATAGTTTGAAAATGTTAAAGC
AGACATACAAAGATTCTTTGTGGAGTTCATCAGTTCCAACTCAAAACGCT
ACACTATTGATCAACTTAAGAACTTGAAGGTGAGAAGATTTATCCAATCA
GTATAGTAACAGCCGTTATCTCCTTTTATTCAACATTTTGATTCTATCCC
AAAAACATTCATTTATAGCCATTTTATAAGTTAATAGCAAAAAACAATAT
TCACAGGCATCGAAATAAGGGATAGAAAGTGCATCGCGATTTTTTGATGA
GCATGATTTTGCATCCTAAAATGGATCAATTTTCAATTTTTAGCTTGTAA
GTAATCCAAAAATGCGATACGCTAATTCGATCCCTGATTCATTTTATGCA
ATAAGACAAATACCATATCTTTGAAACCTGTCTATAGGATCAAAGTCTAT
CAATGATGATCTGCGATCAATCAGTGAAAGTGCGAACAGAAAGCATCAAT
GTGATTTCAAAGGTAATAATTTTAAAGTTCAAAATATTTGTCTTTTGTCT
TTATTTGTCTTTGTGAGATTAGTTCTTTCAATTAAGCACTCCTATGTTTG
CTTTTGAGTGAAACAATGTCTTGTTTGTTGGTACATGGATTAGTATTTTT
CTTAAATCTTCACCAACATTCACTCTTTTAGATTGTTACCATTGGTGATT
TTGATGAAAGCTTTGGAATCAAAGATTTGATTGAAAAGTATGCCAATCTT
TGAAATTCATAGAACCTTTTTCAATAGTAGTTTAAAATTGCTGAATGGTT
TGAATTAACGTATCACGATTCACGATGCGTCTTAGGAAATGCATGAAGCA
AAAAACTTAAAAACTCAGCAAAAACACGATACAAAATGATAAATTGAAAT
AAATATTTTGAGCCTCCAAGCAAATAGAACTGCTATTTGGCCTTTAAATT
AGTCTATAGAGTGGAAAATGCATCGTATAATTATAAAAACACATCGTGAA
AACTGAAGAATTTCATTAGCTAAAAAGTGCATAAAGTTCGATGCACTTTT
AAATTGTTAATTCGAATCTTGTGCTGTATAAAAAACTATTACTATATATG
TTTTAACCTTCATATATAAAAATTATTAATGTAACTTACAACCATGTAAT
ATCACATCGGTTATTGCACAGTCAAAGGTATCATTTCATGCTGGAATGTC
TTACAATCTTTTACGTACCAGTTCTTGCTAGAAAATGAAATAGCTTCCTA
TATTTTCTTACATCAGTTTTTGAAAGAGATTTTCTTAATTGGTTTGATAA
TGAAAACATTGTCTACCACATGGGGTTTGCAATTAGCCTTGCATTTAGAA
TATCTCCAGATTATTGTTAACATAATTGCATGTCTGTGAATCATTGAATA
TCACTCCCTCGCCGCAAGTTAATAAATTGCAATATCTAATGAAGGACCAT
GTAATGCTTGGTTGATGTTAATCTTCCATTGGAACAATCCATGGGTACTA
AAGTCTGTTCACGATAAGTGTGCACTCTTTTTTCTTTTACGTATAACTTT
AGAAGGGACTCTTCAATCTTTATAAATTTGGTAATGTTGGAAAGATATCA
GTGAGTGGAACAATTTGAAATAAAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTTTTGGGTCGGCAAAGCCGACCTAAAGAGGAAA
AATATTATTTGTTAGGTTAGTCTAATTGTGTTATCATTTGATAACACATA
ATAATCGAGCCTCATTCCATTCTCTTTATAAAACATAAAACTTAATAACA
CAATTATAGAGCAGCTGAATTTGTTAGTTCGTTAATTTTCTTTCTATTTT
GTCTTTGCCGACCTAAACAAGCTACTTAGGATGGCTTTGCCGACCTAAAA
TGACCTCTAGGTTGGCAAAATTTTGCCGGCCTACTGCCGGTTTTGGTCGG
CACTTAAGTGCCGATATGATTTTGTCTGAATTCACAGGGCTGAACTGGAC
CAATACATGCCATAGGTTTTGCAGGTCAAACGTAATAAAATCATCCTATT
TGAGCTACCTGAATAGGGAAGAAATTTTTGCGAGAAGAAATTTTGCTGAG
CACAGAATTTAATCTAGGGTTTTTTGACAAATCCACAAAATTAAATTTAG
TGAAACACAAATATATTTCAGGATTAAAAAATCACCTCTAAAATTGGTCT
TTTTAAATTAAATTCCGTGAAAATTTCTTCCCTCAAGGGAATACATTTTC
AAGAATCGTGTTAAATGCAACAGATTGTACACACTCATCATAATCTTGCC
ATGCNTCAACATTTAACACATAGATACCAACCATTTTAGTATTTAACTAC
CCTGGGTAGTAAAAGTTTTTTTCGATTTTTCGTCACACCACCACCGTAGT
ATAAACGTCATTATGTCTGAGATTTTACTACCGACCCCCCTGATGCACAG
GAAAATAGACAAACTCATAGAAAGATCTCTTATTGTCTTTATTTTTTATA
GTGAAAAGTGCCATCCATTCATTGATTGGTTTGTTATGTGAAAAGTTTCC
TGATCTGATTGGTGAAGAAAAGCTGAGGAGAATTCCAAGAATTTATTTAC
CAACACTCAAACAAGAAATGGAGGTTGGTATTTTTCTTATGTACCAATTC
ATCAAAC

Coding sequence (CDS) from alignment at sc0003739:5646..9502-

>TCONS_00042863 ID=TCONS_00042863|Name=TCONS_00042863|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at sc0003739:5646..9502- (Clytia hemisphaerica)
TGAAAAGTGCCATCCATTCATTGATTGGTTTGTTATGTGAATTGTTACCA
TTGGTGATTTTGATGAAAGCTTTGGAATCAAAGATTTGATTGAAAAGATC
AAAGTCTATCAATGATGATCTGCGATCAATCAGTGAAAGTGCGAACAGAA
AGCATCAATGTGATTTCAAAGTTTGAAAATGTTAAAGCAGACATACAAAG
ATTCTTTGTGGAGTTCATCAGTTCCAACTCAAAACGCTACACTATTGATC
AACTTAAGAACTTGAAGCTTACTGCTCAAGTTTACTCTTCAATGAACAAA
ATGGACTTGTAAAGTTTTTGAAACTTGCAGTTGGGCTCAGAGAAATGGGA
GAGCCGTTAAAAACAAGTTTATCTAGCTTGCATTCTTGTCTGAAATTGCA
AGATTCAGCAAGAGGTGGGAAAGCTACTCTGATTGCAAAGGACATATTTG
GTTTCTCTCTGGATGTTTCTCCACAAGAAGTTGTGAAAAGTGCCATCCAT
TCATTGATTGGTTTGTTATGTGAATTGTTACCATTGGTGATTTTGATGAA
AGCTTTGGAATCAAAGATTTGATTGAAAAGATCAAAGTCTATCAATGATG
ATCTGCGATCAATCAGTGAAAGTGCGAACAGAAAGCATCAATGTGATTTC
AAAGTTTGAAAATGTTAAAGCAGACATACAAAGATTCTTTGTGGAGTTCA
TCAGTTCCAACTCAAAACGCTACACTATTGATCAACTTAAGAACTTGAAG
CTTACTGCTCAAGTTTACTCTTCAATGAACAAAATGGACTTGTAAAGTTT
TTGAAACTTGCAGTTGGGCTCAGAGAAATGGGAGAGCCGTTAAAAACAAG
TTTATCTAGCTTGCATTCTTGTCTGAAATTGCAAGATTCAGCAAGAGGTG
GGAAAGCTACTCTGATTGCAAAGGACATATTTGGTTTCTCTCTGGATGTT
TCTCCACAAGAAGTTGTGAAAAGTGCCATCCATTCATTGATTGGTTTGTT
ATGTGAATTGTTACCATTGGTGATTTTGATGAAAGCTTTGGAATCAAAGA
TTTGATTGAAAAGATCAAAGTCTATCAATGATGATCTGCGATCAATCAGT
GAAAGTGCGAACAGAAAGCATCAATGTGATTTCAAAGTTTGAAAATGTTA
AAGCAGACATACAAAGATTCTTTGTGGAGTTCATCAGTTCCAACTCAAAA
CGCTACACTATTGATCAACTTAAGAACTTGAAGCTTACTGCTCAAGTTTA
CTCTTCAATGAACAAAATGGACTTGTAAAGTTTTTGAAACTTGCAGTTGG
GCTCAGAGAAATGGGAGAGCCGTTAAAAACAAGTTTATCTAGCTTGCATT
CTTGTCTGAAATTGCAAGATTCAGCAAGAGGTGGGAAAGCTACTCTGATT
GCAAAGGACATATTTGGTTTCTCTCTGGATGTTTCTCCACAAGAAGTTGT
GAAAAGTGCCATCCATTCATTGATTGGTTTGTTATGTGAATTGTTACCAT
TGGTGATTTTGATGAAAGCTTTGGAATCAAAGATTTGATTGAAAAGATCA
AAGTCTATCAATGATGATCTGCGATCAATCAGTGAAAGTGCGAACAGAAA
GCATCAATGTGATTTCAAAGTTTGAAAATGTTAAAGCAGACATACAAAGA
TTCTTTGTGGAGTTCATCAGTTCCAACTCAAAACGCTACACTATTGATCA
ACTTAAGAACTTGAAGCTTACTGCTCAAGTTTACTCTTCAATGAACAAAA
TGGACTTGTAAAGTTTTTGAAACTTGCAGTTGGGCTCAGAGAAATGGGAG
AGCCGTTAAAAACAAGTTTATCTAGCTTGCATTCTTGTCTGAAATTGCAA
GATTCAGCAAGAGGTGGGAAAGCTACTCTGATTGCAAAGGACATATTTGG
TTTCTCTCTGGATGTTTCTCCACAAGAAGTTGTGAAAAGTGCCATCCATT
CATTGATTGGTTTGTTATGTGAATTGTTACCATTGGTGATTTTGATGAAA
GCTTTGGAATCAAAGATTTGATTGAAAAGATCAAAGTCTATCAATGATGA
TCTGCGATCAATCAGTGAAAGTGCGAACAGAAAGCATCAATGTGATTTCA
AAGTTTGAAAATGTTAAAGCAGACATACAAAGATTCTTTGTGGAGTTCAT
CAGTTCCAACTCAAAACGCTACACTATTGATCAACTTAAGAACTTGAAGC
TTACTGCTCAAGTTTACTCTTCAATGAACAAAATGGACTTGTAAAGTTTT
TGAAACTTGCAGTTGGGCTCAGAGAAATGGGAGAGCCGTTAAAAACAAGT
TTATCTAGCTTGCATTCTTGTCTGAAATTGCAAGATTCAGCAAGAGGTGG
GAAAGCTACTCTGATTGCAAAGGACATATTTGGTTTCTCTCTGGATGTTT
CTCCACAAGAAGTTGTGAAAAGTGCCATCCATTCATTGATTGGTTTGTTA
TGTGAATTGTTACCATTGGTGATTTTGATGAAAGCTTTGGAATCAAAGAT
TTGATTGAAAAGATCAAAGTCTATCAATGATGATCTGCGATCAATCAGTG
AAAGTGCGAACAGAAAGCATCAATGTGATTTCAAAGTTTGAAAATGTTAA
AGCAGACATACAAAGATTCTTTGTGGAGTTCATCAGTTCCAACTCAAAAC
GCTACACTATTGATCAACTTAAGAACTTGAAGCTTACTGCTCAAGTTTAC
TCTTCAATGAACAAAATGGACTTGTAAAGTTTTTGAAACTTGCAGTTGGG
CTCAGAGAAATGGGAGAGCCGTTAAAAACAAGTTTATCTAGCTTGCATTC
TTGTCTGAAATTGCAAGATTCAGCAAGAGGTGGGAAAGCTACTCTGATTG
CAAAGGACATATTTGGTTTCTCTCTGGATGTTTCTCCACAAGAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026646XLOC_026646Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042863-proteinTCONS_00042863-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042863-exon-sc0003739-1575043694:9330..9502TCONS_00042863-exon-sc0003739-1575043694:9330..9502Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1575043694:8861..8937TCONS_00042863-exon-sc0003739-1575043694:8861..8937Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1575043694:8624..8719TCONS_00042863-exon-sc0003739-1575043694:8624..8719Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1575043694:8241..8315TCONS_00042863-exon-sc0003739-1575043694:8241..8315Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1575043694:8016..8071TCONS_00042863-exon-sc0003739-1575043694:8016..8071Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1575043694:5646..5801TCONS_00042863-exon-sc0003739-1575043694:5646..5801Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1510915933:9330..9502TCONS_00042863-exon-sc0003739-1510915933:9330..9502Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1510915933:8861..8937TCONS_00042863-exon-sc0003739-1510915933:8861..8937Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1510915933:8624..8719TCONS_00042863-exon-sc0003739-1510915933:8624..8719Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1510915933:8241..8315TCONS_00042863-exon-sc0003739-1510915933:8241..8315Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1510915933:8016..8071TCONS_00042863-exon-sc0003739-1510915933:8016..8071Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1510915933:5646..5801TCONS_00042863-exon-sc0003739-1510915933:5646..5801Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1491911889:9330..9502TCONS_00042863-exon-sc0003739-1491911889:9330..9502Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1491911889:8861..8937TCONS_00042863-exon-sc0003739-1491911889:8861..8937Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1491911889:8624..8719TCONS_00042863-exon-sc0003739-1491911889:8624..8719Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1491911889:8241..8315TCONS_00042863-exon-sc0003739-1491911889:8241..8315Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1491911889:8016..8071TCONS_00042863-exon-sc0003739-1491911889:8016..8071Clytia hemisphaericaexon
TCONS_00042863-exon-sc0003739-1491911889:5646..5801TCONS_00042863-exon-sc0003739-1491911889:5646..5801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003739supercontigsc0003739:5646..9502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.4388	5.30369	3.50538	3.42946	2.14394	1.42667	2.2591	1.91352	2.89093	3.14419	4.32342	2.17333	2.2816	1.61817	3.13585	4.33403	4.02008	2.63966	0.97842	2.23384	2.83152	2.72278	3.16598	3.40167	1.97641	1.44319	5.04828	2.32649	2.32179	2.6494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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