TCONS_00044651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044651
Unique NameTCONS_00044651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044651 ID=TCONS_00044651|Name=TCONS_00044651|organism=Clytia hemisphaerica|type=transcript|length=445bp
TAGCTAGTGGAACCTTTCATGTCATCAACAGCCAATCACGAGCGAGAACG
ATCCGTCCTGTCAATCAAAGATTTATTGGAGCATTATTTAAAAATGGCTA
ACTTCAACAATGAGATGCATTTCAGCACGCTAGGTTATATCTTGGGTCGT
TTGTTACCACGGTGCACCGACCCTATGACCGACGTTCGACAGACTACCAT
GGAATGTGTTCAACTCTTATTGACCATCAACGATCGTTATGAAGgaGTTC
CATCCAACGTGAGTGATGAAAGGATACAAGGGTTGACGCAACTTCGAGAC
GCCTTGAGTAAAAGTGATCCTGCTGCTCTCTTCAACGTTGTCAATGAACT
CTCTTTGGTTGTGAGTAAGAAGACACCAGACGAACAATTGAAGACATTGG
TTTTCTCACTCACTGACGGTCTCAATGACGCGCATGCGCAAAGCT
Run BLAST on NCBI

protein sequence of TCONS_00044651-protein

>TCONS_00044651-protein ID=TCONS_00044651-protein|Name=TCONS_00044651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSSTANHERERSVLSIKDLLEHYLKMANFNNEMHFSTLGYILGRLLPRCT
DPMTDVRQTTMECVQLLLTINDRYEGVPSNVSDERIQGLTQLRDALSKSD
PAALFNVVNELSLVVSKKTPDEQLKTLVFSLTDGLNDAHAQS
Run BLAST on NCBI

transcript from alignment at sc0005939:1..3072-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044651 ID=TCONS_00044651|Name=TCONS_00044651|organism=Clytia hemisphaerica|type=transcript|length=3072bp|location=Sequence derived from alignment at sc0005939:1..3072- (Clytia hemisphaerica)
TAGCTAGTGGAACCTTTCATGTCATCAACAGCCAATCACGAGCGAGAACG
ATCCGTCCTGTCAATCAAAGATTTATTGGAGCATTATTTAAAAATGGCTA
ACTTCAACGTAAGCATTTGTTTTGATCCAAAGTTTTTCCGTCACAGACAG
ATTTCCGTCTTAACGAGGTGCAAAACGAGGCTTTTCCGTCTTCAAATTCA
ACAAAATTCTGTTAAAACATGAAGAATCTGTTTTGATTTGTTGTTTAAAG
TCCATTTCCGTCTGTGATGAAAACTTTCCTGTGGCCACTGGTTTTGATTC
TAATGTTATTTCTTACACAAGAAGCAGCTGGAGATGTTTCATGAAGGAAA
GTGAATTATATCTCAACAACATTCACCGTATTCTAGATAGGAAACAAATA
TTAACTTTGACTCTCTTTTGCTCGTATTTCTAAAATTTCACGATAAAAAG
AAATATTTACAAATAATTTTCTTTAAAGGGCGTTAAATCTATATTGACAT
ATTCAATGATGTCATAATCAATGCCGTGCATATTTTGTAAATACCACTAA
AATATACAAGGAAATATGCATAGATTGGTCGTCTGGCCTCGCCTAGGGTC
GAGGTTCAACTAAAAAATAATTTGAGGTCCTACCGCAAGTTATCATATCT
AAAAACTCATCCCAGCTGGCACACAACGTTGTTTTAACGTTCAAATAACG
TTATTTGGATGTTATGAATGTCACATGGACGTTGTTTTGACGTTGTGTGT
CGGCTGGGATATCCGAATTATAAGTTTTCCACTCACCTTTCTAAGGGTGT
ATATTAGGCCGTGGCCATTGGATTGATTAAGCTTCAAAAATAAAAGAAAA
ACTTTTTAATGTGAGGTCTCCTAGTCAATTTGAGGGTGCTGATGTAGAAT
TTGAACATTATCAAACTTGAAAACCGGCCTTAGAAATTTGCCCGAAAAAA
AACGCGTAAAAGATTACGTAAAAATGTCGGGTTTCTCAAACATCTTCTCA
AACAGTTGAAAAGATAACAGGAGCTGAGCCACTCCCCAAAATCTGCTTAC
CAAAAAATAATGATTTATTTATGATATTTTATTTATAAGAACCCTTTTAT
AAGAACATCAGCCTCAGATTAACGCGCTCAGAACAATAGCTGTATTGATT
GAAACAGTTAAGAACAATTTAAGAGCAATCTCAGGCTCAGCTAAAATTTA
CTGCTTTTTATAAACAAACAAGCGTGTACTTCATTCATTTGAGGTATCAA
GAAATTTTTTTTACTCACCGAATGTTTCAAGGAATTAATTTACCCTGTCA
TTCGCCACAATCAGTTCTCGAAAAATTTAAAGAATTGTCTTACTTGCTGA
AATTAAAAGATTATCTGCCAAAATAAGTTCTTGTCAAATTTAACTTTTTT
TAACGATTTTTGCTCTTCGTCAAAATTAGTTTTCGTCGAAATTTGTTCCC
TCGAGGTTTTTTATTTACTGAAATTGTCATTTTATATTCGCTCTTCCTTT
CTCTTTAGAATGAGATGCATTTCAGCACGCTAGGTTATATCTTGGGTCGT
TTGTTACCACGGTGCACCGACCCTATGACCGACGTTCGACAGACTACCAT
GGAATGTGTTCAACTCTTATTGACCATCAACGATCGTTATGAAGGTTTGT
TAGCATTCTTCACTTGCGCGCGCTGCGATTGCATCTCTTAGCTTCAATCC
TTTTTGCCTGGAAAAAAGATTACGTCATAAAAATGTAGCGCGCGCTCGAA
AAAAAATTTGAACACATTTCAACTTTTTTTAACCGTTATGTCAGATCACG
CCAATGGAGTTGCTTTTTCTTTTGACCAATAGCATGGAAGCTTTCCTCAA
AAAAGTGCGAGTCTCTATAATTTGAACGTCTCGAACAAGTTGTCTAGTCC
TTTCAGATAACAATGCCTCATAAACCTTACTCCATAACTCGAAATTTACT
TGACTCGAACAAATTTGTGCTCCCCTTGCGTGTTCGCGTTGCGGAGACTC
CACTGTAGAAAGGACGATTGTTATGAAGGTTTGGCAGAACTGCTAAGCAG
AAACAAAAGAATTTCTCTAAATTTTGCTCGCACGGCGCTGCAAGGGGAGA
AAATTAGAAGGAGATACGCTAAATGGCATTGTGGATGTCCTTTGAGCTGG
TATTTGAGAATCACCTAGAGGCCTCTAGTTTCTGATGTATTCTGTTTGGC
TATTTGAAGCTTAGAGACTCCGTTTTATGAAGGTCTCGGTGTAAATTGTA
GGGTGGTATGGTGGATGAAAAGACCTTATCGGAATTTTTTATTTCTAAAA
CAGCGATGCATTGTGGGACCGTTTTTGAGGTATTACAATAGAATTCCCTC
GAGGAATTCTATTGGAAACCGTTGGATTAAATTATTTTTCATTTCAGGAG
TTCCATCCAACGTGAGTGATGAAAGGATACAAGGGTTGACGCAACTTCGA
GACGCCTTGAGTAAAAGTGATCCTGCTGCTCTCTTCAACGTTGTCAATGA
ACTCTCTTTGGTATGTCACTTTCGTTTTCTTTTGTTAATAATACAGTGGT
GTCTCTTTAACTCGAGTCTCTACAAATCGAATGTCTCCTTAACTCGAACA
GGTTTTATGGTCCCTTCAGTTACTCCATTACTCGAAATTTCCTTAACTCA
AACAAATTTGCGTTCCCCGTCCATGTTTGAGTTATGAAGACTCCATTGTA
ATACAGTCTCTATAACTCGAATTTATGTCTCCTTTTACTCGAACATTTTA
GCACTGTCTTTTATAACCTTACTCCGAAACTCGAAATTTCCTTCATCCGA
ACAAATTTGTGTTCCCCGTGCGGGTTCGAGCTCATTATTCTCATTGAGAC
AAAAATTGGAGTATACATTTCCACTGGGGACGATATTTTGGCCAATTTTT
CCAGTAGGAAGGGGTCCCAGGGGGTCTGTGAGAAGGGGGTGTTAGTCAAC
TTTTTCAATATTTTGTTTTCACTTTTCCTTGTAGGTTGTGAGTAAGAAGA
CACCAGACGAACAATTGAAGACATTGGTTTTCTCACTCACTGACGGTCTC
AATGACGCGCATGCGCAAAGCT

Coding sequence (CDS) from alignment at sc0005939:1..3072-

>TCONS_00044651 ID=TCONS_00044651|Name=TCONS_00044651|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0005939:1..3072- (Clytia hemisphaerica)
GTTGTGAGTAAGAAGACACCAGACGAACAATTGAAGACATTGGTTTTCTC
ACTCACTGACGGTCTCAATGACGCGCATGCGCAAAGCGAGTTCCATCCAA
CGTGAGTGATGAAAGGATACAAGGGTTGACGCAACTTCGAGACGCCTTGA
GTAAAAGTGATCCTGCTGCTCTCTTCAACGTTGTCAATGAACTCTCTTTG
AATGAGATGCATTTCAGCACGCTAGGTTATATCTTGGGTCGTTTGTTACC
ACGGTGCACCGACCCTATGACCGACGTTCGACAGACTACCATGGAATGTG
TTCAACTCTTATTGACCATCAACGATCGTTATGAAGATGTCATCAACAGC
CAATCACGAGCGAGAACGATCCGTCCTGTCAATCAAAGATTTATTGGAGC
ATTATTTAAAAATGGCTAACTTCAACGTTGTGAGTAAGAAGACACCAGAC
GAACAATTGAAGACATTGGTTTTCTCACTCACTGACGGTCTCAATGACGC
GCATGCGCAAAGCGAGTTCCATCCAACGTGAGTGATGAAAGGATACAAGG
GTTGACGCAACTTCGAGACGCCTTGAGTAAAAGTGATCCTGCTGCTCTCT
TCAACGTTGTCAATGAACTCTCTTTGAATGAGATGCATTTCAGCACGCTA
GGTTATATCTTGGGTCGTTTGTTACCACGGTGCACCGACCCTATGACCGA
CGTTCGACAGACTACCATGGAATGTGTTCAACTCTTATTGACCATCAACG
ATCGTTATGAAGATGTCATCAACAGCCAATCACGAGCGAGAACGATCCGT
CCTGTCAATCAAAGATTTATTGGAGCATTATTTAAAAATGGCTAACTTCA
ACGTTGTGAGTAAGAAGACACCAGACGAACAATTGAAGACATTGGTTTTC
TCACTCACTGACGGTCTCAATGACGCGCATGCGCAAAGCGAGTTCCATCC
AACGTGAGTGATGAAAGGATACAAGGGTTGACGCAACTTCGAGACGCCTT
GAGTAAAAGTGATCCTGCTGCTCTCTTCAACGTTGTCAATGAACTCTCTT
TGAATGAGATGCATTTCAGCACGCTAGGTTATATCTTGGGTCGTTTGTTA
CCACGGTGCACCGACCCTATGACCGACGTTCGACAGACTACCATGGAATG
TGTTCAACTCTTATTGACCATCAACGATCGTTATGAAGATGTCATCAACA
GCCAATCACGAGCGAGAACGATCCGTCCTGTCAATCAAAGATTTATTGGA
GCATTATTTAAAAATGGCTAACTTCAACGTTGTGAGTAAGAAGACACCAG
ACGAACAATTGAAGACATTGGTTTTCTCACTCACTGACGGTCTCAATGAC
GCGCATGCGCAAAGCGAGTTCCATCCAACGTGAGTGATGAAAGGATACAA
GGGTTGACGCAACTTCGAGACGCCTTGAGTAAAAGTGATCCTGCTGCTCT
CTTCAACGTTGTCAATGAACTCTCTTTGAATGAGATGCATTTCAGCACGC
TAGGTTATATCTTGGGTCGTTTGTTACCACGGTGCACCGACCCTATGACC
GACGTTCGACAGACTACCATGGAATGTGTTCAACTCTTATTGACCATCAA
CGATCGTTATGAAGATGTCATCAACAGCCAATCACGAGCGAGAACGATCC
GTCCTGTCAATCAAAGATTTATTGGAGCATTATTTAAAAATGGCTAACTT
CAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028267XLOC_028267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044651-exon-sc0005939-1575043694:2965..3072TCONS_00044651-exon-sc0005939-1575043694:2965..3072Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1575043694:1429..1564TCONS_00044651-exon-sc0005939-1575043694:1429..1564Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1575043694:563..675TCONS_00044651-exon-sc0005939-1575043694:563..675Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1575043694:1..88TCONS_00044651-exon-sc0005939-1575043694:1..88Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1510915933:2965..3072TCONS_00044651-exon-sc0005939-1510915933:2965..3072Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1510915933:1429..1564TCONS_00044651-exon-sc0005939-1510915933:1429..1564Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1510915933:563..675TCONS_00044651-exon-sc0005939-1510915933:563..675Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1510915933:1..88TCONS_00044651-exon-sc0005939-1510915933:1..88Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1491911889:2965..3072TCONS_00044651-exon-sc0005939-1491911889:2965..3072Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1491911889:1429..1564TCONS_00044651-exon-sc0005939-1491911889:1429..1564Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1491911889:563..675TCONS_00044651-exon-sc0005939-1491911889:563..675Clytia hemisphaericaexon
TCONS_00044651-exon-sc0005939-1491911889:1..88TCONS_00044651-exon-sc0005939-1491911889:1..88Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044651-proteinTCONS_00044651-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005939supercontigsc0005939:1..3072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.55364	4.11952	2.02625	1.51736	6.63603	3.49838	7.08935	8.1852	5.75812	10.631	6.60134	5.69553	5.16783	3.95321	10.4712	11.123	13.2811	9.84925	9.51781	10.2	5.85293	6.80662	10.8207	8.25765	5.63998	7.03885	9.35827	7.72144	11.8481	12.1251
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
Blast
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BLAST of TCONS_00044651 vs. Swiss-Prot (Human)
Match: MROH1 (Maestro heat-like repeat-containing protein family member 1 OS=Homo sapiens GN=MROH1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.283e-19
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 1 
Query:    7 VEPFMSSTANHERERSVLSIKDLLEHYLKMANFNNEMHFSTLGYILGRLLPRCTDPMTDVRQTTMECVQLLLTINDRYEGVPSNVSDERIQGLTQLRDALSKSDPAALFNVVNELSLVVSKKTPDEQLKTLVFSLTDGLND 429
            + P++ S   HER R++     LL ++L+    +  + F  LG ++G   PRC D     RQ  ++CV  LL +   YEG   +  D+  + L  L+D L   DPA LF+  + +  +++K+ P +QL +L+ ++ + L D
Sbjct:  924 LSPWIKSPRGHERARALGLSALLLRYFLEHLRVSALVPFHNLGLLIGLFSPRCADLWPATRQEAVDCVYSLLYLQLGYEGFSRDYRDDVAERLLSLKDGLVHPDPAILFHTCHSVGQIIAKRLPPDQLISLLLTMFEALGD 1064
The following BLAST results are available for this feature:
BLAST of TCONS_00044651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MROH12.283e-1930.50Maestro heat-like repeat-containing protein family... [more]
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