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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045060 ID=TCONS_00045060|Name=TCONS_00045060|organism=Clytia hemisphaerica|type=transcript|length=1446bp
CCATCATGGCGACCATCCAAAGGATAAACATCATAGGCAGTCGGGAGGGT
AGTCGGAACCGAAGAAGACTCAAAGCGAACCAAACAGGCAAAAAATTTAG
GGTCGGCATCAAAAGCAATATCAGCACCAACAGAAACAACCTGATTAGCG
GCGTTGACAGATGTATCCATCTGAATGCAATGAAGAAAACCACCATTACC
AGCATTAACCGTCAAACTATCAAAATATAACGTTGACGATGTAGCTTTAG
GTGTCTGTAAAACAGGTGCCGAAGAAGCTGGAGTAACAGAAGTGAGAACC
AGCttatcagaaaaaaagtttgaattatGGCGAGAAATAAAAGTCTGAAA
CATGATTAAACTCCTAAGCAGAAAACCTACCGCGCTTCGCTTGGTCAACC
CCTCAGcggcaaaaattaaaatttttaccGCTTCGGCGTTATAACCTCAC
ACTCAATCTTTTATCACGAAGTCATGATTGAATCGCGAGTGGTCGGCAGA
TTGCGATAAACGGTCACATTAAATTTAACCTGACTATTCCACTGCAACAA
CTGAACGGACTGGAAACACTGGTCATAATCATGGTGGCGAATAAGTACGC
GTTCTTGCAAATCACCAGAAGGCGGTTCCTGAATGAATGGGAAGCCTTCA
AGAAGGTGATAAGCAGGAGAAACATACGAAGGCGCATAACGATACCACTG
ACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACGGAAAACAT
CCTTCATAGAAATTTCACGCGGCGGCAAGTTGCCATACAAAACAGGGTCG
CCAGCAATATCGGTATAAGTCAAAGCACCTTTAGCGTTAAGGTACTGAAT
CTCTTTAGTCGCAGTAGGCGGAAAACGAACAAGCGCAAGAGTAAACATAG
TGCCATGCTCAGGAACAAAGAAACGCGGCACAGAATGTTTATAGGTCTGT
TGAACACGACCAGAAAACTGGCCTAACGACGTTTGGTCAGTTCCATCAAC
ATCATAGCCAGATGCCCAGAGATTAGAGCGCATGACAAGTAAAGGACGGT
TGTCAGCGTCATAAGAGGTTTTACCTCCAAATGAAGAAATAACATCATGG
TAACGCTGCATGAAGTAATCACGTTCTTGGTCAGTATGCAAATTAGCATA
AGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTT
GGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAAATGTTTTTG
AGATGGCAGCAACGGAAACCATAACGAGCATCATCTTGATTAAGCTCATT
AGGGTTAGCCTCGGTACGGTCAGGCATCCACGGCGCTTTAAAATAGTTGT
TATAGATATTCAAATAACCCTGAAACAAATGCTTAGGGATTTTATTGGTA
TCAGGGTTAATCGTGCCAAGAAAAGCGGCATGGTCAATATAACCAG Run BLAST on NCBI protein sequence of TCONS_00045060-protein >TCONS_00045060-protein ID=TCONS_00045060-protein|Name=TCONS_00045060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
GYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNE
LNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYA
NLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVD
GTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQ
YLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQW
YRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLL
QWNSQVKFNVTVYRNLPTTRDSIMTS Run BLAST on NCBI transcript from alignment at sc0006800:1..1446 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045060 ID=TCONS_00045060|Name=TCONS_00045060|organism=Clytia hemisphaerica|type=transcript|length=1446bp|location=Sequence derived from alignment at sc0006800:1..1446 (Clytia hemisphaerica)
CTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACC
AATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAA
CTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATG
AGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAA
AACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAAT
GACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATG
CTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCAT
GATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCG
TCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG
ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAG
ACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTAT
GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTC
AGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGAC
CCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT
TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGT
GGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAA
GGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT
ACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGT
TGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTG
CCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGA
GGTTATAACGCCGAAGCggtaaaaattttaatttttgccgCTGAGGGGTT
GACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTAATCATGTTTC
AGACTTTTATTTCTCGCCataattcaaactttttttctgataaGCTGGTT
CTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAA
AGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCTGGTA
ATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCT
AATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAA
ATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCC
TCCCGACTGCCTATGATGTTTATCCTTTGGATGGTCGCCATGATGG Coding sequence (CDS) from alignment at sc0006800:1..1446 >TCONS_00045060 ID=TCONS_00045060|Name=TCONS_00045060|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0006800:1..1446 (Clytia hemisphaerica)
GGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAA
TAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACT
ATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAG
CTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAA
CATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGA
CGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCT
AATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA
TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTC
CTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGAT
GGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGAC
CTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGT
TTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAG
TACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCC
TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTT
TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGG
TATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGG
CTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTAC
TTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTG
CAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCC
GACCACTCGCGATTCAATCATGACTTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045060-exon-sc0006800-1491911889:1..1446 | TCONS_00045060-exon-sc0006800-1491911889:1..1446 | Clytia hemisphaerica | exon |
| TCONS_00045060-exon-sc0006800-1510915933:1..1446 | TCONS_00045060-exon-sc0006800-1510915933:1..1446 | Clytia hemisphaerica | exon |
| TCONS_00045060-exon-sc0006800-1575043694:1..1446 | TCONS_00045060-exon-sc0006800-1575043694:1..1446 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006800 | supercontig | sc0006800:1..1446 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003514 | Microviridae_protein_F |
| IPR016184 | Capsid/spike_ssDNA_virus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005198 | structural molecule activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0019028 | viral capsid |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0019028 |
viral capsid |
| molecular_function |
GO:0005198 |
structural molecule activity |
Blast
The following BLAST results are available for this feature:
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