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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046137 ID=TCONS_00046137|Name=TCONS_00046137|organism=Clytia hemisphaerica|type=transcript|length=2402bpRun BLAST on NCBI protein sequence of TCONS_00046137-protein >TCONS_00046137-protein ID=TCONS_00046137-protein|Name=TCONS_00046137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MSQGASKTLCRYFLHGACSRGSTCTFAHDLKAQSNNVCKFYMMGKCGYGQRun BLAST on NCBI transcript from alignment at scaffold_106:107425..123656+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046137 ID=TCONS_00046137|Name=TCONS_00046137|organism=Clytia hemisphaerica|type=transcript|length=16232bp|location=Sequence derived from alignment at scaffold_106:107425..123656+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_106:107425..123656+ >TCONS_00046137 ID=TCONS_00046137|Name=TCONS_00046137|organism=Clytia hemisphaerica|type=CDS|length=18144bp|location=Sequence derived from alignment at scaffold_106:107425..123656+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046137 vs. Swiss-Prot (Human)
Match: MKRN2 (Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens GN=MKRN2 PE=1 SV=2) HSP 1 Score: 268.855 bits (686), Expect = 6.906e-81 Identity = 143/391 (36.57%), Postives = 208/391 (53.20%), Query Frame = 2
Query: 224 CRYFLHGACSRGSTCTFAHDL-KAQSNNVCKFYMMGKCGYGQQCRYDHVKATKI-----------IP------PHPPTDTSRMTVLKKKEPP----KKIITLNEDKDWSSAPSFIPGKKIHKTTKVKDEDVIKEVSFSKMASFNVSNTTTEDIYDEQTLYQEGISFDGEQNDLLCPFAAHRECPYGEECEYIHGEICDICGLQALHPTNKIQRKEHQAQCESRLEQDMKIAFAAQRSDGVTCSICMDVVKGKSDPSERYFGLLENCIHPFCLTCIRKWR-SSSLDKNVVRTCPICREQSWFVTPSEFWIDDVTEKKEAIEGYKNYLNTKHCRLFDQGNGTCPFGTSCFYKHIYPDGREEERKPDLRYLEDGVGNIKIHKTPRLNEFIEQRE 1327
CRYF+HG C GS C F+HDL ++ + +CK+Y G C YG +CRYDH + + +P PHPP++ + V P K+ + L + A + D E+ + + + +D+ + S+ EQ LCP+AA EC +G+ C Y+HGE+C+IC LQ LHP + QRK H+ C E +M+ AFA Q S CSICM+V+ K+ SER FG+L NC H +CL+CIR+WR + + ++++CP CR S FV PS +W++D +K E IE +K + K C+ F+QG GTCPFG+ C Y+H YPDGR E + + L G ++ + RL +FIE RE
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSPEMK--PHSYLDAIRSGLDDV-------EASSSYSNEQQ--LCPYAAAGECRFGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRKQL-SSQGTVRFFNSVRLWDFIENRE 386 The following BLAST results are available for this feature:
BLAST of TCONS_00046137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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