Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053165 ID=TCONS_00053165|Name=TCONS_00053165|organism=Clytia hemisphaerica|type=transcript|length=2319bpRun BLAST on NCBI protein sequence of TCONS_00053165-protein >TCONS_00053165-protein ID=TCONS_00053165-protein|Name=TCONS_00053165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp MAKIPGGTVVELDGDEMTRVIWDMIKKQLILPFVDLDIKRYDLGMENRDARun BLAST on NCBI transcript from alignment at scaffold_226:147858..154312- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053165 ID=TCONS_00053165|Name=TCONS_00053165|organism=Clytia hemisphaerica|type=transcript|length=6455bp|location=Sequence derived from alignment at scaffold_226:147858..154312- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_226:147858..154312- >TCONS_00053165 ID=TCONS_00053165|Name=TCONS_00053165|organism=Clytia hemisphaerica|type=CDS|length=14904bp|location=Sequence derived from alignment at scaffold_226:147858..154312- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053165 vs. Swiss-Prot (Human)
Match: IDHC (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2) HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0 Identity = 309/412 (75.00%), Postives = 363/412 (88.11%), Query Frame = 3 Query: 327 KIPGGTVVELDGDEMTRVIWDMIKKQLILPFVDLDIKRYDLGMENRDATDDQVTHEAAAAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPKLVPGWTKPIIIGRHAHADQYKATDFVVPGAGKLEMKFTPSDGSAPMEYVVYDFN-GGGVAMGMYNTDQSIRDFAYSSFNCALEKSYPLYLSTKNTILKKYDGRFKDIFQEIYDKEYKEKFEKAGIWYEHRLIDDMVAYALKVDGGFVWACKNYDGDVQSDTVAQGYGSLGMMTSVLLCPDGKTIEAEAAHGTVTRHYRQHQQGKETSTNPVASIFAWTRGLLHRGKLDSNDKLTQFAKSLEETCVETIESGFMTKDLAICIKGGANKIVRADYLNTIEFIQKIADNLQVKLKAANL 1559 KI GG+VVE+ GDEMTR+IW++IK++LI P+V+LD+ YDLG+ENRDAT+DQVT +AA AIKK+NVG+KCATITPDEKRVEEFKLK+MWKSPNGTIRNILGGTVFREAIICKNIP+LV GW KPIIIGRHA+ DQY+ATDFVVPG GK+E+ +TPSDG+ + Y+V++F GGGVAMGMYN D+SI DFA+SSF AL K +PLYLSTKNTILKKYDGRFKDIFQEIYDK+YK +FE IWYEHRLIDDMVA A+K +GGF+WACKNYDGDVQSD+VAQGYGSLGMMTSVL+CPDGKT+EAEAAHGTVTRHYR +Q+G+ETSTNP+ASIFAWTRGL HR KLD+N +L FA +LEE +ETIE+GFMTKDLA CIKG N + R+DYLNT EF+ K+ +NL++KL A L Sbjct: 4 KISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPN-VQRSDYLNTFEFMDKLGENLKIKLAQAKL 414 The following BLAST results are available for this feature:
BLAST of TCONS_00053165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|