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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053538 ID=TCONS_00053538|Name=TCONS_00053538|organism=Clytia hemisphaerica|type=transcript|length=349bp
CGCAAAGAATTGTTTTTTGGACCAAAGGCAAAAGGAGTTCAATAcaatga
aaaagattttgacTTAATAGTTGAAggattggaaaaaagattaccgaaaa
atgtaaatgtttttcttcttcatccaAATGATTGGAAGAAGTGTTCGAAG
ATggaatttttcggaaattttgaagAGGTTTATTGGTGGAGATATGAAAA
CATTCCTCAAGATTATTATTTTGGTGGAGAATACTCTGTTATTATGCTTG
CCCAATTTGAGTAAAGAATGAcgtacttttttatataagataaaCCCTAG
GGGTGTCATGCAAGATCAAAATACTTTTGACTTAGATTTGACAAACGAG Run BLAST on NCBI transcript from alignment at scaffold_233:110304..113972+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053538 ID=TCONS_00053538|Name=TCONS_00053538|organism=Clytia hemisphaerica|type=transcript|length=3669bp|location=Sequence derived from alignment at scaffold_233:110304..113972+ (Clytia hemisphaerica)
CGCAAAGAATTGTTTTTTGGACCAAAGGCAAAAGGAGTTCAATAcaatga
aaaagattttgacTTAATAGTTGAAggattggaaaaaagattaccgaaaa
atgtaaatgtttttcttcttcatccaAATGATTGGAAGAAGTGTTCGAAG
ATggaatttttcggaaattttgaagAGGTTTATTGGTGGAGATATGAAAA
CATTCCTCAAGATTATTATTTTGGTGGAGAATACNTATTGGTGGAGATAT
GAAGACATTCCTCAAGATTATTATTTTGGTGGAGAATACTCTGTTATTAT
GCTTGCCCAATTTGAGTAAAGAAGGACGTACCTTTTTCACATAAGATAAT
CCCTGGGGGTTATGCAAGACCTAAGACTTTTTGACTTAGATTTGACAAAC
GAGAAAAATAAAGTACATCGATATCACGGAAATAATGGTTTTACATTGAT
GGAAAGGTGCAAACATTTTATTTCAAGACTAAATTTCATTTCaagacaaa
atttcataatttttccaaaatccagataatatattttatgagaatattta
tgataaaattggcaaaaaaaataagaataaggtAAGAATACCATCATCAT
GGATCTTAGCCTAAGAATGCCATGAACATCGGTATTTTTTAGTCGGTATA
TGTtacacttttgaaaaaaacgtgCATTTTTGCAAATGCAAAAtgcaaaa
ttcttaaaaaggcTGCAAAGAAACTGACGTCTTTAAGGGTGAGAGAATAC
TGCCGCTGAGCAGTATTTTTCGTTTGATTTGTTTTATGTTCCTTTTGTAT
TatagcattttcattttctctagGTTAATNtttgttcttataaaaaaacg
tgtagaacaacaaattaaattggtctcgcctaagtaATAAAATGTGTAGG
AAATAAGAGAATTTTCGATCtccattttttcttcaattttcatcttcatt
ttcaaatttttcaggaaattctAAAAATACTATTTTATAAAGCCACTCGA
AATTGTCTCTCCAACGATGTATTATCTTTCATTAGATCTCTTTTTCCTCG
AAAGcaatgtttgaaaaagtacAGACTGCAAATTATTTCAGAATAGACTT
TTGTAAGTAATATTTCTTACTttttgatccgtctctttagttgttGAGCA
TCGAGCAGagagagaggcatcaagtaccaatttgggaatctttggtttAA
CCTAGACTGCTTGCATCCAcaaacggattcgtgctcctcaTAGGGGATGC
TTGATAAGTGATATTTCCTTTGTCTAGAAATTTGCcattaaagacatttt
tagctggtgAGGGCTTACAAATATAAGATTACGTATTGTTTAATTTCTCT
GTGAAGCACCAAATCatcgttttgttgtttttcttcctccttttttgtgt
tatattgagattttgtaaaatatgAGAAATGAGATTTAtcaacacagact
ctatccgccgcgaaacatattacgtttacgttttatataatatacaaact
atgttatatcataataacatattatacggacgatagcatcatctaagttc
gaacatgattctgagtagagggttcgttgttgcgtgtgtttaacacaatg
attgtttttacaacagacAATAGTGAAGTTAAGttaatcggtaaaatcac
gacgataACCGAacatttaacaggctagtgactttcaaccaatcagattt
cgtattttcactagactattacatttttcgtatgtcgtcgtgattatcct
ggtatgcttaacctcaatattatgattaaaaagcattaactttctttaca
attttcatgacgttactATATGTACTCATTAATCAAAGAAAGAGATTAGC
ACGCTCATAAAACAAACTTAATAACGACAATACAGATCTATTTCATCATG
CAAATATCTAATCGCTATATATTGAAGCTATTATTGAGCTCAGCAGTCCA
ACGAGCATAATgcttattcttttattttgttttagaacTTCATAATTAAA
TACACTTCTATCTGTTTAATCAACTCAAAGTAACGTCATCATGATGGAGT
TTTTTAAGTTGATggagtgtttttaaattgatgGAGTGTTTTTAAGTTGA
TTTTGTGTCTTTTGGTTTTTACTTGCAGTGTAGTATTTTGTTTATTGGTA
GTATCTACACACAGTTCTCGAAAGCCCTTTTGAAATATACTTTAAGTAGA
TTAATTTTCATGTTGACTTTTTTTCACGAATCTGGAATCTAAAAATTTCG
CAAGGATCAAAGTTCGCGAATCAGCCCtgttttctttaatttcttttgag
gttttgggaaaaattaggatttcaaatatttcgcgtggactaaatttcgc
aaaaatcgcCAAGATTAATCCACGTTAAATTTACTCCACTGAAAGCAAAT
TTCATAAGAGCTTTCGCAAATTAAACTATACTTTAGGGCAAGTTAAGCAA
AATGAATGAAGCACACAGCTCAGCTGATCGTGAACGAACAATTCACGAAG
GAAACCGAAGCAAGAAATTGCTGAATTGAGagtgaaatatgaaaaagaga
ctttggaaaacaaaatcaaaactctTGAAATGCAGAATGAGATACAGACA
CTCAAACATAACAGTGAGATTGCTAAATTGAAGGCAAAGCAGGAGAAAAA
CGAAGATAAGGTCTTTGTAAGCTTGATTGAAAGTGCtttaaaagaagaaa
accaAGCTCTCAAGAACGAGATACAAACACTCAAACATGACAATGAAATT
GCTAAATATAAGGCGCAgcaggaaaacaaaaataatggaAGTCAAATGGC
AATAGAAATCGAAACACTCAAAATTAAGAATCAAGCTCTCGAGAAAACAG
TCGCTGAAGCTGGTctgaaaaatgaattcaaaGCCCTTGAAAATGAGATG
GGCGGCTTGAAAGCTCAAAATGACAAATTAGAAAAGGAAGTTCAAGccct
taaaaatggaatagaagGCTTGAAAGTTGAGTTGAAAGATCAAACCCAAA
TTCAAAAAGCCAAGCTGGAAAATGAAGTTCAAGCCCTGAGAAATCATTTT
GaacatttgaaaacaaaagttaataaAAAACAAGAAACTGAAGGTGCTCA
AAAAGCTGTGCAAGAAAAAGTCCAGAAGCCTTTGGGCAATATACCTGACC
AGTTTTTCGAAGGAGCAGAAAAGTTTTTAACGAATTACAATAGAGGGAGA
GAAGACTTTATCGGTGAAAATTACAAATTGTGGTATGAAGATATGTCACG
TTTGATGAAGAATCGTAAACAATATGTCgatcaaaagtttgttttgattc
gtaAAGACGTGAAAAGGTATCACGAATATTTGTATTTTGGATCAAAGGCA
AAAGACGTTAAATACAATGAACAAGATTATGATCTAATAGTTGAAggatt
ggaaaaaagattaccgaaaaatgtaaatgtttttcttcttcatccaAATG
ATTGGAAGAAGTGTTCGAAGATggaatttttcggaaattttgaagAGGTT
AATTGGTGGAGATATGAAAACATTCCTCAAGATTATTATTTTGGTGGAGA
ATACTCTGTTATTATGCTTGCCCAATTTGAGTAAAGAATGAcgtactttt
ttatataagataaaCCCTAGGGGTGTCATGCAAGATCAAAATACTTTTGA
CTTAGATTTGACAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053538-exon-scaffold_233-1491911889:110304..110504 | TCONS_00053538-exon-scaffold_233-1491911889:110304..110504 | Clytia hemisphaerica | exon |
| TCONS_00053538-exon-scaffold_233-1510915933:110304..110504 | TCONS_00053538-exon-scaffold_233-1510915933:110304..110504 | Clytia hemisphaerica | exon |
| TCONS_00053538-exon-scaffold_233-1575043694:110304..110504 | TCONS_00053538-exon-scaffold_233-1575043694:110304..110504 | Clytia hemisphaerica | exon |
| TCONS_00053538-exon-scaffold_233-1491911889:113825..113972 | TCONS_00053538-exon-scaffold_233-1491911889:113825..113972 | Clytia hemisphaerica | exon |
| TCONS_00053538-exon-scaffold_233-1510915933:113825..113972 | TCONS_00053538-exon-scaffold_233-1510915933:113825..113972 | Clytia hemisphaerica | exon |
| TCONS_00053538-exon-scaffold_233-1575043694:113825..113972 | TCONS_00053538-exon-scaffold_233-1575043694:113825..113972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:110304..113972 + |
Blast
The following BLAST results are available for this feature:
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