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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060653 ID=TCONS_00060653|Name=TCONS_00060653|organism=Clytia hemisphaerica|type=transcript|length=1852bp
GTCAAGTTTTTATATTCCCTTGACGTTTGATTTTCCTCTCCCTATTGGAG
AACAAGTTTGCTAACGGTGGGAATATATTGGTCGTTTAGCTTACGGGGGT
CAATTGAACGATTCtattctttaactcgaacaaataaaaagtaaaatgaa
acCCCCTGTAAAGATTTgacaagaaaaaacataaaaggCTCTTCTCAAAT
CAGGTCATTCATAATGCGTCGCCCAAGGCGACTCCAGGTCAACTGGAAGA
GCTTAGTGGGAGCTGCACATGGTAAAAGAACGCTAAAACTCCGACCAAAC
CAGCGGGACCTTTACACGTGTCCTATAAAGCTATGTTTACATGGTGACTT
CAAAAGTTGCAGAGGGTTGAGAAAGCATATCAACACTAAACATCCTTGGT
ACTATTACTTTGACGAGCAGCCTGAAGTTAAACGTGAGGACATGACTGAC
TTTCCTGTTGCACCAAAGAGAGCATCTACTGCCGGTAAGCCGTCTTTTTC
ATTGGATGAAGGAATTGGAAGAGACTTTTTAACTTGGCTTGGAACATCTT
GTGGAGGTGGAAAAAGCAATAAGGAGGCTAGACAGATTGGCAAACGagct
atgaaatattttatgcatGCCATGGGTAACAATGAAAATGACATTGACCT
AACTAACGAATTTGTTGACTGTTGTTTGTCATCTGCTTCAATTTTCATAT
CGTTTCTAAAAGTGATAGAAGAAGAATGGAAAGTTGGTCCCTCCGGTGCT
GTAAACTACGTAAAGTGTATTACAGATTTCATTGATTTTCGAAAAGCAAA
TGGAGTTTCTGACAATACTCTTCGTTGCTTCACAGTTGTGGAAGTTTATC
TCAGGCGAGCAAATGAAAACCTTCGAAAGAAAAAGAACTTAGACTGTAAT
CGAAACCTCGACTTGGAAACCCTTATCGCCAGAAACAGCTGGGCAACGTT
GGAGGAAATGGAAGTGGTCATACCTTTCCACATGAAACAGTTCAAAAAGA
TAATTGAGAAGTGTTCTGAAAGCCACGAAGCAAGATTTCTAACGAAAGGT
GAATTGGTCTTCTGTATTCGATTCATCACAGCTTTGCTTTTCCTCCGAGT
TAAATGCTCAAGACCTATGACGTACCAGTTTCTCACGGTTGAAATGGTTA
ACAAAGCAAGAAATAATGGTGGATTTGTCGATCAAAGAGAGTTCAAAACA
GCATCAAGGTATATCTTCGACACTTTGATATTATCAGACGATACGATAGA
GATTATTGATTTGTACTTAGAGTACATCCGACCTCGTCTCAATCCACAAT
GCGACTTCCTTCTACTCTCAACAAATGGAACTCAATTTCAATCCTTGACT
TCAGCTATGACGATCCTCGTTCATGAAGCCATTGGCAAGCACATCAACCC
AACTCGTTATAGGCAAATAGTCGAAACGGAAAGCAGCGAAAGGCTTAACT
TGGAAGAGCAACATTATATCACCGAAGATCAAAAGCACAGCTCTACTGTA
GCTAAAATACACTACAAGAAGACTCAATCGAGGATCGTTGCAGTAGAGGG
ACGTAAATGTATGGAAAAGATGACAAAGGACGCAAGGTCTGACGGCAACA
AAAACCTTGTTGAAATGTTTAATAATATATCTTGTTCTTTCGATAACGAC
GTATTGAGTCATAGTCGACGCATAATAGAAGGTATGAAACCTAACGCTCA
AAATTCGATTTCGAGTGCTTCTTGCTCATCAAGCCATATGGAAGTTGATA
CCGATCCATACCAACCAGTGAGTGAATCACTAAACGAATCGACAGATATG
GTCATCACAGAAACTTTTCCTACTAATAACACTCCAGCCGTGGCTGATGT
AC Run BLAST on NCBI transcript from alignment at scaffold_348:455120..457231+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060653 ID=TCONS_00060653|Name=TCONS_00060653|organism=Clytia hemisphaerica|type=transcript|length=2112bp|location=Sequence derived from alignment at scaffold_348:455120..457231+ (Clytia hemisphaerica)
GTCAAGTTTTTATATTCCCTTGACGTTTGATTTTCCTCTCCCTATTGGAG
AACAAGTTTGCTAACGGTGGGAATATATTGGTCGTTTAGCTTACGGGGGT
CAATTGAACGATTCtattctttaactcgaacaaataaaaagtaaaatgaa
acCCCCTGTAAAGATTTgacaagaaaaaacataaaaggCTCTTCTCAAAT
CAGGTCATTCATAATGCGTCGCCCAAGGCGACTCCAGGTCAACTGGAAGA
GCTTAGTGGGAGCTGCACATGGTAAAAGAACGCTAAAACTCCGACCAAAC
CAGCGGGACCTTTACACGTGTCCTATAAAGCTATGTTTACATGGTGACTT
CAAAAGTTGCAGAGGGTTGAGAAAGCATATCAACACTAAACATCCTTGGT
ACTATTACTTTGACGAGCAGCCTGAAGTTAAACGTGAGGACATGACTGAC
TTTCCTGTTGCACCAAAGAGAGCATCTACTGCCGGTAAGCCGTCTTTTTC
ATTGGATGAAGGAATTGGAAGAGACTTTTTAACTTGGCTTGGAACATCTT
GTGGAGGTGGAAAAAGCAATAAGGAGGCTAGACAGATTGGCAAACGagct
atgaaatattttatgcatGCCATGGGTAACAATGAAAATGACATTGACCT
AACTAACGAATTTGTTGACTGTTGTTTGTCATCTGCTTCAATTTTCATAT
CGTTTCTAAAAGTGATAGAAGAAGAATGGAAAGTTGGTCCCTCCGGTGCT
GTAAACTACGTAAAGTGTATTACAGATTTCATTGATTTTCGAAAAGCAAA
TGGAGTTTCTGACAATACTCTTCGTTGCTTCACAGTTGTGGAAGTTTATC
TCAGGCGAGCAAATGAAAACCTTCGAAAGAAAAAGAACTTAGACTGTAAT
CGAAACCTCGACTTGGAAACCCTTATCGCCAGAAACAGCTGGGCAACGTT
GGAGGAAATGGAAGTGGTCATACCTTTCCACATGAAACAGTTCAAAAAGA
TAATTGAGAAGTGTTCTGAAAGCCACGAAGCAAGATTTCTAACGAAAGGT
GAATTGGTCTTCTGTATTCGATTCATCACAGCTTTGCTTTTCCTCCGAGT
TAAATGCTCAAGACCTATGACGTACCAGTTTCTCACGGTTGAAATGGTTA
ACAAAGCAAGAAATAATGGTGGATTTGTCGATCAAAGAGAGTTCAAAACA
GCATCAAGGTATGATTATGGTTCTAAAGAATTTGTATTAGATTAAGACAA
AGTCTACTTTTTCTGCTTGATATCCTAATTTTAAGAAACGATGATTTTTG
ATCTAATAAATGATACCATACATTTTATATCACTTACTGTATCTTTAAAT
CAAAGTTTAATTCTCATTTAAATCATATCTATCAtatgataattattatt
ttgttatgATATTTAAACTGTTTTATTAATAGTATAATATAATAACAATG
CATGTTTATTGTTTTAAGGTATATCTTCGACACTTTGATATTATCAGACG
ATACGATAGAGATTATTGATTTGTACTTAGAGTACATCCGACCTCGTCTC
AATCCACAATGCGACTTCCTTCTACTCTCAACAAATGGAACTCAATTTCA
ATCCTTGACTTCAGCTATGACGATCCTCGTTCATGAAGCCATTGGCAAGC
ACATCAACCCAACTCGTTATAGGCAAATAGTCGAAACGGAAAGCAGCGAA
AGGCTTAACTTGGAAGAGCAACATTATATCACCGAAGATCAAAAGCACAG
CTCTACTGTAGCTAAAATACACTACAAGAAGACTCAATCGAGGATCGTTG
CAGTAGAGGGACGTAAATGTATGGAAAAGATGACAAAGGACGCAAGGTCT
GACGGCAACAAAAACCTTGTTGAAATGTTTAATAATATATCTTGTTCTTT
CGATAACGACGTATTGAGTCATAGTCGACGCATAATAGAAGGTATGAAAC
CTAACGCTCAAAATTCGATTTCGAGTGCTTCTTGCTCATCAAGCCATATG
GAAGTTGATACCGATCCATACCAACCAGTGAGTGAATCACTAAACGAATC
GACAGATATGGTCATCACAGAAACTTTTCCTACTAATAACACTCCAGCCG
TGGCTGATGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060653-exon-scaffold_348-1491911889:455120..456327 | TCONS_00060653-exon-scaffold_348-1491911889:455120..456327 | Clytia hemisphaerica | exon |
| TCONS_00060653-exon-scaffold_348-1510915933:455120..456327 | TCONS_00060653-exon-scaffold_348-1510915933:455120..456327 | Clytia hemisphaerica | exon |
| TCONS_00060653-exon-scaffold_348-1575043694:455120..456327 | TCONS_00060653-exon-scaffold_348-1575043694:455120..456327 | Clytia hemisphaerica | exon |
| TCONS_00060653-exon-scaffold_348-1491911889:456588..457231 | TCONS_00060653-exon-scaffold_348-1491911889:456588..457231 | Clytia hemisphaerica | exon |
| TCONS_00060653-exon-scaffold_348-1510915933:456588..457231 | TCONS_00060653-exon-scaffold_348-1510915933:456588..457231 | Clytia hemisphaerica | exon |
| TCONS_00060653-exon-scaffold_348-1575043694:456588..457231 | TCONS_00060653-exon-scaffold_348-1575043694:456588..457231 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:455120..457231 + |
Blast
The following BLAST results are available for this feature:
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