|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062827 ID=TCONS_00062827|Name=TCONS_00062827|organism=Clytia hemisphaerica|type=transcript|length=2210bpRun BLAST on NCBI protein sequence of TCONS_00062827-protein >TCONS_00062827-protein ID=TCONS_00062827-protein|Name=TCONS_00062827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp SLIQGAMFGGFYKTYQVKVQDESLRNDLIEVHAQAIASVQAYCHWLVKCQRun BLAST on NCBI transcript from alignment at scaffold_372:149900..163817- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062827 ID=TCONS_00062827|Name=TCONS_00062827|organism=Clytia hemisphaerica|type=transcript|length=13918bp|location=Sequence derived from alignment at scaffold_372:149900..163817- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:149900..163817- >TCONS_00062827 ID=TCONS_00062827|Name=TCONS_00062827|organism=Clytia hemisphaerica|type=CDS|length=22428bp|location=Sequence derived from alignment at scaffold_372:149900..163817- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062827 vs. Swiss-Prot (Human)
Match: XPO6 (Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1) HSP 1 Score: 396.741 bits (1018), Expect = 2.266e-122 Identity = 211/540 (39.07%), Postives = 332/540 (61.48%), Query Frame = 3
Query: 6 LIQGAMFGGFYKTYQVKVQDES-LRNDLIEVHAQAIASVQAYCHWLVKCQGAAQNNENGLQQFQSIVVSMLDTIHTMFSKEVPERISSAAAHLLVSITTTVRPSFFLRIEQGQKLFQAV-EGGCKECSQTVQTLLYRALSNSLILTWNFLNDAQQEWESRSENHRNLINTLCKDISSINMAALLSNPAAK---EQYKSTIKTICSILSDIVDAASSEGTKSRKIMFNSVHEYIDVFSHMLTAYITDTDVADKIMSFLLECLRSLRIQMGTVGVEKLVNTLLELLKRDQILYIIQSGNTSGINALSRFLKMLELIVQEHNPSFKTLLPNVISFCLNDILPILAEHNVPDLKMDXXXXXXXXXXQNWRYFFKSNVLSKMN---GEDQIQHEDQFLTILKAFGQPLMETEIELFKKSIQVLESINSKNRLYQKALFQTTMLSSFLQVLMNSLVTKSHNLLQEEIIQGVYSMVSTNFDAYFSQFIPSFLMNTGGLTDHQKSQLHANYKRHQDTPSFMTSLQQFIGDLRYLQIVNSSLPKGTITL 1601
L++ ++G K Y ++ S L+ DLI+VHAQ++A++QAY HWL Q ++ + QQF +++ + +D I + S +V +++ +A HLLVS+ TTVRP F + I QK+F + + Q L+ RALSN L+L W L + +Q+W RS NH +LI+ L +D ++ +A+ P K + K I S+L DIV+ S E TKSR+I + S+ E + V + A+I +DV D+++SF L R LR+QMG E+++ T L + R+Q+ I ++G + +FLK+L+++VQE FK LP++I+ C+ + PI+AE PD+K +L EL + L NWRYFFKS VL+ + E+Q+++E QF I++AFGQ ++ +I LFK+++ LE++N+K +LY K +F+T ML F+ VL+ LV KSH+LLQEEI +Y+M S +FD +F+ F+P FL + G+ +QKS L N+K +D PSF ++ + + DLRY ++ N SLP GT+ L
Sbjct: 590 LVKVTLYGSQIKLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLA--QYCSEVHRQNTQQFVTLISTTMDAITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQVLVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAV--APQRKMPLDDTKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLSFFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVVQEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLASVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRTAMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQKSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL 1125 The following BLAST results are available for this feature:
BLAST of TCONS_00062827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.