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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070453 ID=TCONS_00070453|Name=TCONS_00070453|organism=Clytia hemisphaerica|type=transcript|length=1990bp
ttgaggGAAATACAGATATACTCAACGAAAGGCATTAAATTAATACTGAA
TTAATGCAGAATTTTTTCACACGTGATGTAGAGAAGAGCTgaatttttga
agatattttatttcatcaacatcaatcaatcaaagATTTCCTACAAATCT
GCTGACATCAATCCAGAAAACACCGTATCAAACGAAGCAAACAACAAGTC
AAAAAACAGGTGTTACACTTTGGAAATAACAATAGCCACAGATATTTCCG
ACAAATTTCTCAACAACTATTTCAGAAATCACAAAAGACATCGAATTAAG
AAAATAGCGAACCAACGTCTATGAAGCGAGTCCGCTCAAAGAATCTATCA
GTGAGCAACAAAGCAAGAAGTATGGAGCATACACCACAAGATATGCAAGA
ACTCAATGAAGAAATGTTTTCTTATGGCATGGAGCATGCACCACATTCAC
CATCAGACCATCGGCACCGTCACGGCTCCACCTCGATGACCATGCAAAGT
GACTTTTCAGACGAGAGCGGTGTTGACAAATCGGATAAAATCAAACGCCC
TATGAACGCCTTCATGCTTTGGTCGAAACTGAGACGTCGCGAGATTTCCA
AAAATGACCCCACCATACATAACGCTCAAATCAGTAAGCTGTTAGGTGAA
GAATGGAAGGTCCTATCGACAGAAGACAAGCAACCGTTCCTGAGAGAGTC
ACAAAAACTGATGGCCAAGCACAAGAAGGAGCACCCCAACTATCGATACA
AACCACGCAAAAATAAACAAGAGCGAGGTCATACATCAGGAGGTGGATCA
TACCATCAGAAAGCTTTCTCCTTACCAAGCCAAGCTAAACCGTATATGAA
ATACTCTTCACATCACCACCATTACAGACCATCGCAATCACGTTCGATGG
TGGATGATCGTAGACCACCCTCACCGCCCACACACCACCCGGTTGTTTAT
TATCAATACCGTAAATGTCACGTACCCGGTTGCTACGATTGTGAATATCA
ACGCGCCTATGAGTCGCACGGTCCAAGTCCGCCATCTTTCTGTTGCCGTG
GTAGCGGTTATGAAAAATCGAATACGCATGCGTCGAGACGTTGCATGTGT
TGCTCTCCACCACCCTATCACCAACCCACCTGCATGGGGTGTAACCGCCA
AAGCCCACCACCACCCTCCTCAAATCAGCAACGAAATAACAGCTTTACAG
TTGAATCTCTCATCAACGATCGAGGCTATAACTCATCTGGTAAATCGACA
TGCACTAGCTCGTGTTCCAATGGATCGACGTCACCAAGCACCAGCCTGAG
ATCGTCAGCAGAGAATGACACAAAGGGATCGGAGGGGTCTGGTCCCGAAG
AATCTTAACTCTCAACAAACACgaattaaaaatgacaaaatgttATTGAG
TCTGAAACATTATGAGAAATTTgggtgtaattttttttgttcttttttat
agcGGTGTATATTATATTAAAAATAATCTAATTTGGTTTTAAGATTGAAA
TATCAGATGAACGGTGCTTACGTTGCAAATGTTCATTTGAAAAGTTTTAG
AAATTCTATGATTTGACAAATATTTACTCAAATTAATACATAATGATTTT
AGTGAAAAAAGGTGCCGATCATAAAATAAGACGTTTCTGTCTCAATGTGT
GGGAGTCATTTGTTTTAGTTTAATAAAAACCGATGatattggaggataat
tttatCTATTCAGCTTTAAATGGGGATGATGTTGTCATTGGAGACTATTT
TTAGCCCAATTTTCCAAATCTAGGAGAGGTCTGGGTCTGTGATACATGGG
GTGTAAAATGTAACAGTAATAATAACGTATTACAGGCTGGAAAGAAAATA
TATCGtctaatttattattttttaaatgattttaattgtacataattaac
ggtaattttttttaacgaAATCCAGAATCAAAGGAAAACTTTAATTGCTT
TACTACTCATAAAGATATCAAGTATGCGTTCTAAAAAACA Run BLAST on NCBI protein sequence of Sox15 protein >TCONS_00070453-protein ID=TCONS_00070453-protein|Name=Sox15 protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MKRVRSKNLSVSNKARSMEHTPQDMQELNEEMFSYGMEHAPHSPSDHRHR
HGSTSMTMQSDFSDESGVDKSDKIKRPMNAFMLWSKLRRREISKNDPTIH
NAQISKLLGEEWKVLSTEDKQPFLRESQKLMAKHKKEHPNYRYKPRKNKQ
ERGHTSGGGSYHQKAFSLPSQAKPYMKYSSHHHHYRPSQSRSMVDDRRPP
SPPTHHPVVYYQYRKCHVPGCYDCEYQRAYESHGPSPPSFCCRGSGYEKS
NTHASRRCMCCSPPPYHQPTCMGCNRQSPPPPSSNQQRNNSFTVESLIND
RGYNSSGKSTCTSSCSNGSTSPSTSLRSSAENDTKGSEGSGPEES Run BLAST on NCBI transcript from alignment at scaffold_56:457969..463591+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070453 ID=TCONS_00070453|Name=TCONS_00070453|organism=Clytia hemisphaerica|type=transcript|length=5623bp|location=Sequence derived from alignment at scaffold_56:457969..463591+ (Clytia hemisphaerica)
ttgaggGAAATACAGATATACTCAACGAAAGGCATTAAATTAATACTGAA
TTAATGCAGAATTTTTTCACACGTGATGTAGAGAAGAGCTgaatttttga
agatattttatttcatcaacatcaatcaatcaaaggtagatttatttttt
aattccttccattttttcatcaaaataatttatttttaggTAGGTATTAT
ATACCTCTTGGGACTATTAGTTAGAGTAATTATTAGAGTTTAGGAGGATT
TCACGAAAGTCTTTtcatttcacgcattcacgcaagtttttccaattcac
gcattcatgcactttattttcaatttgcacgcattcacgcaaccaaaaaa
tcccattcacgcaaaccactggggCTGGCAGGGGGCTCATTTTAGATTAA
AAGACGACTTTTGCTGATTGGGACCCAAGGCTGTTTACCATATGGTGATG
tataaaaaccggaacgctgtTAGCGTAGGGCGGGGATGTAATATGCCACG
CTACTTAAATTATTTAAGCGTTTTAGAGAGTTAGAGCTGCGGCTAGATAA
ACACTTTTAGTTTAACGTTCAAACATTTTTGTAGAAAAGCAAGCACAGTG
TTGATAGTGGtgattttataaattttccaaTTACTGCAAAAGCAATAATA
TTTTGGTCGCTACGTATTGAATTTGCGCATAGAATTCAGTATGTAAAATT
ATGAATTCATGTGTTTTTTTACGATTTTAAATCAGCCGTACGGCGTTTGT
CATGGTCATTTCATTTCCGTCGGTGTCTTTTGTAGtcaaaaaatcaatga
aaaacataaaaatgtgATACTCCGTGAAAATCCAAAGTAAAAATAGCGCG
GTTACGGCTTTTTCAAAGGAGGGCATAACAAAAGAGGGACGCAGACAAGA
GAATTATTCAATTATGTTTAAACAATGTATATGTGACAAACCAATAATCG
AATCCATTAATTACTaataattattttattcaaaagaatttaaattggtt
aatttcaattgttatttcattgatttcattaaaataattaaaaggttttt
ttagattctaaaattgaataattaaataGATATTCTCCCCGGGTCaagtt
tataatttttttggaaaatttttttattgaaaagatagcgaaaacaataa
tttcttttcagtcaattttttgtgaaataattTGCGAAGGGAATATTTTT
TCGTAATATTATACATTTCATAATGAGATCCAATTGATTCGCAAAAAAAT
TACCTTGGATTCAATATCAAAATCTGGTTTCCGTTTCACAGGGCGTGACC
Tttcgaaaattctgaaaaacagaaatttttaaaaaatcacaaaaaattta
aaaatatgagaatattctttttattaaaatttaagataaattattaaaaa
tacatACAAGTCATAAAGagtagaattaaaattttgaaaagtcaaATCTG
AAACATTCAATATTGAAGAGTCTTAACTCCCTTTTAAGCAATTATTGATA
TACGTAAAACATCTTTCtaacggaaacacccgaaaaaagccGGAATTTGA
CGCCTGTCtgttactaaaataaaaacacgaTGGTCAAAACCTGGCTTTTT
CCGGGTGCTTCCTTTAGAAAATATGATGTTATCTTGACTTGTACATACCA
AGAATACCTTCAAATAATTTTGACAAGTAATTTAAGTTAAGAGGACTCAA
TCTTCTTATAAAACATGCTTTAGATTTTTCTGTATCATACTTTAAGAATA
TCAAATTCGTCTGAGTTAAATAAAAAAACGCTTAACACGATTTCACGCGA
TATGCAATGTGTCACACGGAAAAACCACTGATTGCAACAATGCAACATCT
TTATATGCTAAATCTGAATGTTAACACAtttaggaaaatgaaattgaaat
tttttaatcgttcctatcctaaaattgactttttttaaagtcTGTTGGGG
AGCCCCTTGCAACGTGTTCCAGAGGGAAAATGGGCGAAGAGAATCAAGTA
AATTCTAGCTCCAAATGAATTAAACTAAAATCGGATGGAATTATAAAATG
AATACCTTCAATTTCAACTAGTATCAACTTTTAAAGGGATTTTGGTCAAT
ATAGTTACCACAATCTAATAAAAAATCATGACCTTTTACTATCCATTAGA
CAAGTGTGTGTGTGCGAACTTGTAATAAACTTTATTTTAAGGAGTTCATT
CAAGGAGTCCCAGCAGATTGTTGAGAACTGGGACACATGAGCTTTCTCGT
ATTCGACTTTAAAAtcacgaaataaattcaaaagttaACATTTCCGATTT
TGATTCGAATACGCCGAGGTAAACCTTCATTGAGAAATCATTTAACGGTA
AGAAATTGGtttctctttaactcgaaactctataatttgaatgtcacctt
aactcaaacaagttttttCTGGTCccttaacaatgccttataaaccttac
tccgaCCCGTGACTTTTCGAGTtacatttgttgatatttttaacACAAAT
CTGCCCTTTCAAGTAACAAACCCATATAAACAAGTCGAATTTTCCATAGC
TGGAATATATACAATAAAAATATAACGTAAATAACTTGAAAACTTTAAGG
CACGATTTGAAAGcgagttaaaaaacaccaaatagctcgaaaagttaaag
gcacgatttaaaaccgagttaaaaacaccaaataactcgaaaagttaaaa
gctcaaaaacaaaaactagACTTATTATTTTGGGATAATCTCTCATACTA
TATTCTGTTTAAACTCTACTACCGATAATGCAAAATAAAGttagaaaaaa
acaactttaGGTATCATAAGGTATCATTGaatcaatttttcttaaaaaaa
aatagggaaaaattaTAGGGAAAAATTAGTCAATGAGACCATTCGACCTA
GAAAAGTGgggattcttataaaataattgTGTAAGAACTATAtacgaaaa
ttttctaaatattcTAAGTTGCAACACCTTGATAGAAATTCTCTACTCAG
TGCATTTCGAGTGTGAAAGATTATATACCGCCAAATCAAGGTGGCATTAG
TCATCTCTTAAGTTAATGTAGTTTTTTTCGTTACGATAATACAGGTCttc
attgttttttgtttttttttttcgttaagATTGTTTCCTTCTTCAAGCAG
agattcgaattttttttaagttatgGCAATAACAACTAGATGACATGATT
TTTGCGacgaaaacaattcaaaactgCTGTGGCTAACATGACCTGCAGGT
ACATGACCTGGAAATGACCTCCGTCATTGCCAATTGGCTGTTACCAATTT
TGGACGACTGTTAATCGNACCTCCGTCATTGCCAATTGGCTGTTACCAAT
TTTGGACGCCTGTTAATCGagtctttctataatttgaatctctcCCAGTG
TTTGAACAAATTAAAATAATgaagaattatttttgaaagcAGTTATGATG
CAAACAAAGACTCTTTAAACTGACCAGACTAGCgcatttgaaaaattgga
aaaacgtCTACAGACAGCAATATTTGTGAACTATttcaaaatgattgaaa
aacctttcaaatattttttttagaaaatgtgaCATGGCGGCTTTTAgtac
cgttggaaaggtatttttataCTTTCTAAACCATTTGGTACAGCCCTTTG
TCTTTCAATTAAgtggtcaaaagttatgacttcaTGTTTCCAGTATATGA
TGggtttattgaattttgaatatatttctttttcttaacCTTACAATATC
TACCTTTTTTTCCTTTAGATTTCCTACAAATCTGCTGACATCAATCCAGA
AAACACCGTATCAAACGAAGCAAACAACAAGTCAAAAAACAGGTGTTACA
CTTTGGAAATAACAATAGCCACAGATATTTCCGACAAATTTCTCAACAAC
TATTTCAGAAATCACAAAAGACATCGAATTAAGAAAATAGCGAACCAACG
TCTATGAAGCGAGTCCGCTCAAAGAATCTATCAGTGAGCAACAAAGCAAG
AAGTATGGAGCATACACCACAAGATATGCAAGAACTCAATGAAGAAATGT
TTTCTTATGGCATGGAGCATGCACCACATTCACCATCAGACCATCGGCAC
CGTCACGGCTCCACCTCGATGACCATGCAAAGTGACTTTTCAGACGAGAG
CGGTGTTGACAAATCGGATAAAATCAAACGCCCTATGAACGCCTTCATGC
TTTGGTCGAAACTGAGACGTCGCGAGATTTCCAAAAATGACCCCACCATA
CATAACGCTCAAATCAGTAAGCTGTTAGGTGAAGAATGGAAGGTCCTATC
GACAGAAGACAAGCAACCGTTCCTGAGAGAGTCACAAAAACTGATGGCCA
AGCACAAGAAGGAGCACCCCAACTATCGATACAAACCACGCAAAAATAAA
CAAGAGCGAGGTCATACATCAGGAGGTGGATCATACCATCAGAAAGCTTT
CTCCTTACCAAGCCAAGCTAAACCGTATATGAAATACTCTTCACATCACC
ACCATTACAGACCATCGCAATCACGTTCGATGGTGGATGATCGTAGACCA
CCCTCACCGCCCACACACCACCCGGTTGTTTATTATCAATACCGTAAATG
TCACGTACCCGGTTGCTACGATTGTGAATATCAACGCGCCTATGAGTCGC
ACGGTCCAAGTCCGCCATCTTTCTGTTGCCGTGGTAGCGGTTATGAAAAA
TCGAATACGCATGCGTCGAGACGTTGCATGTGTTGCTCTCCACCACCCTA
TCACCAACCCACCTGCATGGGGTGTAACCGCCAAAGCCCACCACCACCCT
CCTCAAATCAGCAACGAAATAACAGCTTTACAGTTGAATCTCTCATCAAC
GATCGAGGCTATAACTCATCTGGTAAATCGACATGCACTAGCTCGTGTTC
CAATGGATCGACGTCACCAAGCACCAGCCTGAGATCGTCAGCAGAGAATG
ACACAAAGGGATCGGAGGGGTCTGGTCCCGAAGAATCTTAACTCTCAACA
AACACgaattaaaaatgacaaaatgttATTGAGTCTGAAACATTATGAGA
AATTTgggtgtaattttttttgttcttttttatagcGGTGTATATTATAT
TAAAAATAATCTAATTTGGTTTTAAGATTGAAATATCAGATGAACGGTGC
TTACGTTGCAAATGTTCATTTGAAAAGTTTTAGAAATTCTATGATTTGAC
AAATATTTACTCAAATTAATACATAATGATTTTAGTGAAAAAAGGTGCCG
ATCATAAAATAAGACGTTTCTGTCTCAATGTGTGGGAGTCATTTGTTTTA
GTTTAATAAAAACCGATGatattggaggataattttatCTATTCAGCTTT
AAATGGGGATGATGTTGTCATTGGAGACTATTTTTAGCCCAATTTTCCAA
ATCTAGGAGAGGTCTGGGTCTGTGATACATGGGGTGTAAAATGTAACAGT
AATAATAACGTATTACAGGCTGGAAAGAAAATATATCGtctaatttatta
ttttttaaatgattttaattgtacataattaacggtaattttttttaacg
aAATCCAGAATCAAAGGAAAACTTTAATTGCTTTACTACTCATAAAGATA
TCAAGTATGCGTTCTAAAAAACA Coding sequence (CDS) from alignment at scaffold_56:457969..463591+ >TCONS_00070453 ID=TCONS_00070453|Name=TCONS_00070453|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_56:457969..463591+ (Clytia hemisphaerica)
ATGAAGCGAGTCCGCTCAAAGAATCTATCAGTGAGCAACAAAGCAAGAAG
TATGGAGCATACACCACAAGATATGCAAGAACTCAATGAAGAAATGTTTT
CTTATGGCATGGAGCATGCACCACATTCACCATCAGACCATCGGCACCGT
CACGGCTCCACCTCGATGACCATGCAAAGTGACTTTTCAGACGAGAGCGG
TGTTGACAAATCGGATAAAATCAAACGCCCTATGAACGCCTTCATGCTTT
GGTCGAAACTGAGACGTCGCGAGATTTCCAAAAATGACCCCACCATACAT
AACGCTCAAATCAGTAAGCTGTTAGGTGAAGAATGGAAGGTCCTATCGAC
AGAAGACAAGCAACCGTTCCTGAGAGAGTCACAAAAACTGATGGCCAAGC
ACAAGAAGGAGCACCCCAACTATCGATACAAACCACGCAAAAATAAACAA
GAGCGAGGTCATACATCAGGAGGTGGATCATACCATCAGAAAGCTTTCTC
CTTACCAAGCCAAGCTAAACCGTATATGAAATACTCTTCACATCACCACC
ATTACAGACCATCGCAATCACGTTCGATGGTGGATGATCGTAGACCACCC
TCACCGCCCACACACCACCCGGTTGTTTATTATCAATACCGTAAATGTCA
CGTACCCGGTTGCTACGATTGTGAATATCAACGCGCCTATGAGTCGCACG
GTCCAAGTCCGCCATCTTTCTGTTGCCGTGGTAGCGGTTATGAAAAATCG
AATACGCATGCGTCGAGACGTTGCATGTGTTGCTCTCCACCACCCTATCA
CCAACCCACCTGCATGGGGTGTAACCGCCAAAGCCCACCACCACCCTCCT
CAAATCAGCAACGAAATAACAGCTTTACAGTTGAATCTCTCATCAACGAT
CGAGGCTATAACTCATCTGGTAAATCGACATGCACTAGCTCGTGTTCCAA
TGGATCGACGTCACCAAGCACCAGCCTGAGATCGTCAGCAGAGAATGACA
CAAAGGGATCGGAGGGGTCTGGTCCCGAAGAATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070453-exon-scaffold_56-1491911889:457969..458103 | TCONS_00070453-exon-scaffold_56-1491911889:457969..458103 | Clytia hemisphaerica | exon |
| TCONS_00070453-exon-scaffold_56-1510915933:457969..458103 | TCONS_00070453-exon-scaffold_56-1510915933:457969..458103 | Clytia hemisphaerica | exon |
| TCONS_00070453-exon-scaffold_56-1575043694:457969..458103 | TCONS_00070453-exon-scaffold_56-1575043694:457969..458103 | Clytia hemisphaerica | exon |
| TCONS_00070453-exon-scaffold_56-1491911889:461737..463591 | TCONS_00070453-exon-scaffold_56-1491911889:461737..463591 | Clytia hemisphaerica | exon |
| TCONS_00070453-exon-scaffold_56-1510915933:461737..463591 | TCONS_00070453-exon-scaffold_56-1510915933:461737..463591 | Clytia hemisphaerica | exon |
| TCONS_00070453-exon-scaffold_56-1575043694:461737..463591 | TCONS_00070453-exon-scaffold_56-1575043694:461737..463591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_56 | supercontig | scaffold_56:457969..463591 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009071 | HMG_box_dom |
Blast
BLAST of TCONS_00070453 vs. Swiss-Prot (Human)
Match: SOX2 (Transcription factor SOX-2 OS=Homo sapiens GN=SOX2 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.029e-24 Identity = 41/76 (53.95%), Postives = 65/76 (85.53%), Query Frame = 3
Query: 534 DKIKRPMNAFMLWSKLRRREISKNDPTIHNAQISKLLGEEWKVLSTEDKQPFLRESQKLMAKHKKEHPNYRYKPRK 761
D++KRPMNAFM+WS+ +RR++++ +P +HN++ISK LG EWK+LS +K+PF+ E+++L A H KEHP+Y+Y+PR+
Sbjct: 39 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR 114
The following BLAST results are available for this feature:
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