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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071478 ID=TCONS_00071478|Name=TCONS_00071478|organism=Clytia hemisphaerica|type=transcript|length=1915bp
ATCGAGTAAGACTTAAAGGGAAATATTCaagtcatttgattttttgttgg
GCAAATATGCGTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGAATTCG
ACCAACAATTGATACCAatgatgattttcgaaaatttggaaaaaagatGG
TAGACCTTATTGCAGATTACAACGAAAACGTTCCAAACATGTCGGTACTA
CCGGATGTGAAGTCGGGATACCTTGTAAAACTATTGCCAGATGAAGCGCC
AATGGAACCGGAATCATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCA
TTGTTCCCGGTATCACGCCTTGGAATTCACCCAATTTCCACGCGTATTAC
CCAACAGCGAATAGTTATGCAGCAGTAATGGGTGGAATGTTATGTGATGC
GCTTGGTTGTGTTGGCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAAC
TCGAAAGATTAACTATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAA
GTTTTTCAACACGCGGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATC
CACAAGCGAATCTACGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGA
TGATCGAATATGATCATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTAC
ACATCAAGACAGTCGCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGG
GACAAAGTTAAGGTTGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGG
ATGAATTGAGGAAAGCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCT
TTCTTTGTCGGCGCGTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGC
ACTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATA
TAGATGCTGCGTACGCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATAT
CTTGTGAAAGGGATCGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAA
GTGGCTGATGGTGAATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCAC
TGGATTTGATTAATCTGTTTGATATCAATCCACTGTATTTGAAACatgaa
tatgaaaatgaaatctcAGACTTCAGACACTGGCAGATTCCTCTTGGGAG
GCGTTTTCGATCTTTGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAA
AAGGACTTCAAGAAAATATACGGTGTCAAATTCAacaagcaaaatttttt
gaagagatGGTTCGCAAAGATGCTAGATTTGAAGTGATTAATGATGTCTT
GATGGGTCTTGTTTGTTTCAGATTAATTGGTGATAATGCACTGAATGAAG
ATTTGAATAAGCGAGTCAACGAGGCACGAAAAATACACATGACACCTGCA
ACTGTTGATGGACAGTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAAC
CGAGGATAAAGATATCCAATTCGCCTGGGATGAGATAAAAGACCATGCTG
GTATCCTATTGAACAATGAAGAGCCAAAGAAAAGAGGAGTTTGATGAAAC
TCACGGGCTGATTCAATCAACTCCTATCACTTGAGGGTTTTAGTGCAAAG
TcttaatttatattttattgaaCTTTAACGTACTATGGGTCCGCTGGGGG
AGGAGGGCTCTAAGATAAGGATGGGGGCTCTTAGCATTGCTCTATTAATG
TAAAAGCCATTTCATTTAGTTACGGTAGGTGCTGTATAATTAATGTAATC
GTAGTTGATTCGATTTTAGCACTAATTTACTTTATTTATATGttgaatat
ttcaaatttattcaGTTAGAATTATCCATAGATAGGTAGATTCTGTGGGG
TATAGTTAATTTTTTCAACGTTAAATGAAAAGAtattaatcaaaacaaag
aaaggtcttttaaaa Run BLAST on NCBI protein sequence of TCONS_00071478-protein >TCONS_00071478-protein ID=TCONS_00071478-protein|Name=TCONS_00071478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
RVRLKGKYSSHLIFCWANMRLFNRLSCSTKRIRPTIDTNDDFRKFGKKMV
DLIADYNENVPNMSVLPDVKSGYLVKLLPDEAPMEPESWESVCEDFEKAI
VPGITPWNSPNFHAYYPTANSYAAVMGGMLCDALGCVGFTWIASPACTEL
ERLTMDWLAKMFGLPEVFQHAGEGNGGGVIQGSTSESTLIAILAAKHRKM
IEYDHDEVLASKLVAYTSRQSHSSVEKGVRLAGTKLRLVDTDERFRMRGD
ELRKAIEEDKAKGLIPFFVGASVGTTNVCAFDALDEISAVSGEEKMWMHI
DAAYAGAAMICPEFRYLVKGIENTDSLVVSCHKWLMVNFACAAMFVRDSL
DLINLFDINPLYLKHEYENEISDFRHWQIPLGRRFRSLKLWMVLKSYGVK
GLQENIRCQIQQAKFFEEMVRKDARFEVINDVLMGLVCFRLIGDNALNED
LNKRVNEARKIHMTPATVDGQFVLRFVVASRLTEDKDIQFAWDEIKDHAG
ILLNNEEPKKRGV Run BLAST on NCBI transcript from alignment at scaffold_60:1617904..1620654- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071478 ID=TCONS_00071478|Name=TCONS_00071478|organism=Clytia hemisphaerica|type=transcript|length=2751bp|location=Sequence derived from alignment at scaffold_60:1617904..1620654- (Clytia hemisphaerica)
ATCGAGTAAGACTTAAAGGGAAATATTCAAGTCATTTGATTTTTTGTTGG
GCAAATATGCGTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGGTATGC
TGAATTTAAAGGCCGGTCTCCACTTGCGCGCGCTGCGATCACAACTTTGG
CTTCAATCATTTTTGCTTGGAGAAAAGATTACGTCATAAAAACGTAGATA
TTTCAACTTTTTTTTCAAGCGCGATCGCTACGTCATATCACACCAATGGA
GTTGCTTCATTTTTCTTTTGACCAATAGCGTGGAAGCTTCGCTCGAAGAA
GAGCGATCGCAGCGCACGCAAGTGGAGACCGGCCTTAAGGTGGAGATATA
TCAGCTCATCTGGCAAACTTCATTAATATTAGAATCTACTGGGACATCAA
CCAAAACATAAGAAAAATATGTCAAAAAGTGCATGCATTACAAACTAACC
TTGAACTCTTGTAATTATCCCTCGATATAGCTATGACGTCAGGACCTAGC
TCCTTACTTCTCTTCTCCTTTATGGTTAGAAACCAGCCTAGGAGCTCGTC
CAATTTCTTCTCACTGATCGCGCCAGCTTTGGAAATGAATCTGGAATGAA
CAAATTATTATATTCATCTCTCATAATAATCAAAACAAGTCAATAAAAAT
AGGGCATGAACATTTGATCCAGAAACCCTTTTCTTGTTCCTGAAGTCTTC
AAAGTCACTATCACTATATATAATTGAATTCTACATACGCTTAATAGAAG
CATTACGAAAACCTAAATTTCTCATTCCAGAATTCGACCAACAATTGATA
CCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTAGACCTTATTGCA
GATTACAACGAAAACGTTCCAAACATGTCGGTACTACCGGATGTGAAGTC
GGGATACCTTGTAAAACTATTGCCAGATGAAGCGCCAATGGAACCGGAAT
CATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCATTGTTCCCGGTATC
ACGCCTTGGAATTCACCCAATTTCCACGCGTAGGTTGATTTTCGAAGAAC
TTTCTTTTGAGAACACTGAAATCGCTGCATTTTTTTAACTAATATGATAA
TGATTTTGCTTTTCATTGGTCTAATCTGACATCACTGCAAGCACAAATAT
AAGAAAATTTCTTCTGTTTCATAATTTAGGTATTACCCAACAGCGAATAG
TTATGCAGCAGTAATGGGTGGAATGTTATGTGATGCGCTTGGTTGTGTTG
GCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAACTCGAAAGATTAACT
ATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAAGTTTTTCAACACGC
GGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATCCACAAGCGAATCTA
CGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGATGATCGAATATGAT
CATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTACACATCAAGACAGTC
GCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGGGACAAAGTTAAGGT
TGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGGATGAATTGAGGAAA
GCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCTTTCTTTGTCGGCGC
GTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGCACTCGATGAGATAA
GTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATATAGATGCTGCGTAC
GCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATATCTTGTGAAAGGGAT
CGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAAGTGGCTGATGGTGA
ATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCACTGGATTTGATTAAT
CTGTTTGATATCAATCCACTGTATTTGAAACATGAATATGAAAATGAAAT
CTCAGACTTCAGACACTGGCAGATTCCTCTTGGGAGGCGTTTTCGATCTT
TGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAAAAGGACTTCAAGAA
AATATACGGTGTCAAATTCAACAAGCAAAATTTTTTGAAGAGATGGTTCG
CAAAGATGCTAGATTTGAAGTGATTAATGATGTCTTGATGGGTCTTGTTT
GTTTCAGATTAATTGGTGATAATGCACTGAATGAAGATTTGAATAAGCGA
GTCAACGAGGCACGAAAAATACACATGACACCTGCAACTGTTGATGGACA
GTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAACCGAGGATAAAGATA
TCCAATTCGCCTGGGATGAGATAAAAGACCATGCTGGTATCCTATTGAAC
AATGAAGAGCCAAAGAAAAGAGGAGTTTGATGAAACTCACGGGCTGATTC
AATCAACTCCTATCACTTGAGGGTTTTAGTGCAAAGTCTTAATTTATATT
TTATTGAACTTTAACGTACTATGGGTCCGCTGGGGGAGGAGGGCTCTAAG
ATAAGGATGGGGGCTCTTAGCATTGCTCTATTAATGTAAAAGCCATTTCA
TTTAGTTACGGTAGGTGCTGTATAATTAATGTAATCGTAGTTGATTCGAT
TTTAGCACTAATTTACTTTATTTATATGTTGAATATTTCAAATTTATTCA
GTTAGAATTATCCATAGATAGGTAGATTCTGTGGGGTATAGTTAATTTTT
TCAACGTTAAATGAAAAGATATTAATCAAAACAAAGAAAGGTCTTTTAAA
A Coding sequence (CDS) from alignment at scaffold_60:1617904..1620654- >TCONS_00071478 ID=TCONS_00071478|Name=TCONS_00071478|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_60:1617904..1620654- (Clytia hemisphaerica)
CGAGTAAGACTTAAAGGGAAATATTCAAGTCATTTGATTTTTTGTTGGGC
AAATATGCGTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGAATTCGAC
CAACAATTGATACCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTA
GACCTTATTGCAGATTACAACGAAAACGTTCCAAACATGTCGGTACTACC
GGATGTGAAGTCGGGATACCTTGTAAAACTATTGCCAGATGAAGCGCCAA
TGGAACCGGAATCATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCATT
GTTCCCGGTATCACGCCTTGGAATTCACCCAATTTCCACGCGTATTACCC
AACAGCGAATAGTTATGCAGCAGTAATGGGTGGAATGTTATGTGATGCGC
TTGGTTGTGTTGGCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAACTC
GAAAGATTAACTATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAAGT
TTTTCAACACGCGGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATCCA
CAAGCGAATCTACGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGATG
ATCGAATATGATCATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTACAC
ATCAAGACAGTCGCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGGGA
CAAAGTTAAGGTTGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGGAT
GAATTGAGGAAAGCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCTTT
CTTTGTCGGCGCGTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGCAC
TCGATGAGATAAGTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATATA
GATGCTGCGTACGCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATATCT
TGTGAAAGGGATCGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAAGT
GGCTGATGGTGAATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCACTG
GATTTGATTAATCTGTTTGATATCAATCCACTGTATTTGAAACATGAATA
TGAAAATGAAATCTCAGACTTCAGACACTGGCAGATTCCTCTTGGGAGGC
GTTTTCGATCTTTGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAAAA
GGACTTCAAGAAAATATACGGTGTCAAATTCAACAAGCAAAATTTTTTGA
AGAGATGGTTCGCAAAGATGCTAGATTTGAAGTGATTAATGATGTCTTGA
TGGGTCTTGTTTGTTTCAGATTAATTGGTGATAATGCACTGAATGAAGAT
TTGAATAAGCGAGTCAACGAGGCACGAAAAATACACATGACACCTGCAAC
TGTTGATGGACAGTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAACCG
AGGATAAAGATATCCAATTCGCCTGGGATGAGATAAAAGACCATGCTGGT
ATCCTATTGAACAATGAAGAGCCAAAGAAAAGAGGAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071478-exon-scaffold_60-1575043694:1620561..1620654 | TCONS_00071478-exon-scaffold_60-1575043694:1620561..1620654 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1575043694:1619626..1619874 | TCONS_00071478-exon-scaffold_60-1575043694:1619626..1619874 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1575043694:1617904..1619475 | TCONS_00071478-exon-scaffold_60-1575043694:1617904..1619475 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1510915933:1620561..1620654 | TCONS_00071478-exon-scaffold_60-1510915933:1620561..1620654 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1510915933:1619626..1619874 | TCONS_00071478-exon-scaffold_60-1510915933:1619626..1619874 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1510915933:1617904..1619475 | TCONS_00071478-exon-scaffold_60-1510915933:1617904..1619475 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1491911889:1620561..1620654 | TCONS_00071478-exon-scaffold_60-1491911889:1620561..1620654 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1491911889:1619626..1619874 | TCONS_00071478-exon-scaffold_60-1491911889:1619626..1619874 | Clytia hemisphaerica | exon |
| TCONS_00071478-exon-scaffold_60-1491911889:1617904..1619475 | TCONS_00071478-exon-scaffold_60-1491911889:1617904..1619475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_60 | supercontig | scaffold_60:1617904..1620654 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006520 | cellular amino acid metabolic process |
| GO:0019752 | carboxylic acid metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016831 | carboxy-lyase activity |
| GO:0003824 | catalytic activity |
| GO:0030170 | pyridoxal phosphate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0019752 |
carboxylic acid metabolic process |
| biological_process |
GO:0006520 |
cellular amino acid metabolic process |
| molecular_function |
GO:0016831 |
carboxy-lyase activity |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0030170 |
pyridoxal phosphate binding |
Blast
BLAST of TCONS_00071478 vs. Swiss-Prot (Human)
Match: DDC (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2) HSP 1 Score: 516.924 bits (1330), Expect = 2.201e-177 Identity = 242/475 (50.95%), Postives = 330/475 (69.47%), Query Frame = 3
Query: 120 DDFRKFGKKMVDLIADYNENVPNMSVLPDVKSGYLVKLLPDEAPMEPESWESVCEDFEKAIVPGITPWNSPNFHAYYPTANSYAAVMGGMLCDALGCVGFTWIASPACTELERLTMDWLAKMFGLPEVFQHAGEGNGGGVIQGSTSESTLIAILAAK----HRKMIEYDH--DEVLASKLVAYTSRQSHSSVEKGVRLAGTKLRLVDTDERFRMRGDELRKAIEEDKAKGLIPFFVGASVGTTNVCAFDALDEISAVSGEEKMWMHIDAAYAGAAMICPEFRYLVKGIENTDSLVVSCHKWLMVNFACAAMFVRDSLDLINLFDINPLYLKHEYENE--ISDFRHWQIPLGRRFRSLKLWMVLKSYGVKGLQENIRCQIQQAKFFEEMVRKDARFEVINDVLMGLVCFRLIGDNALNEDLNKRVNEARKIHMTPATVDGQFVLRFVVASRLTEDKDIQFAWDEIKDHAGILLNNE 1520
+FR+ GK+MVD +A+Y E + V PDV+ GYL L+P AP EP+++E + D EK I+PG+T W+SP F AY+PTA+SY A++ MLC A+GC+GF+W ASPACTELE + MDWL KM LP+ F + G GGGVIQGS SE+TL+A+LAA+ HR + KLVAY+S Q+HSSVE+ + G KL+ + +D F MR L++A+E DKA GLIPFF+ A++GTT C+FD L E+ + +E +W+H+DAAYAG+A ICPEFR+L+ G+E DS + HKWL+VNF C+AM+V+ DL F ++P YLKH +++ I+D+RHWQIPLGRRFRSLK+W V + YGVKGLQ IR +Q + FE +VR+D RFE+ +V++GLVCFRL G N +NE L +R+N A+KIH+ P + +FVLRF + SR E +Q AW+ IK+ A +L E
Sbjct: 4 SEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADVLRAE 478
The following BLAST results are available for this feature:
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