XLOC_008885 (gene) - C. hemisphaerica

Overview
NameXLOC_008885
Unique NameXLOC_008885
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000222:326685..336837+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008885 ID=XLOC_008885|Name=XLOC_008885|organism=Clytia hemisphaerica|type=gene|length=10153bp|location=Sequence derived from alignment at sc0000222:326685..336837+ (Clytia hemisphaerica)
ttacagacctttattaagaaagctcccagccctaccggtgcccctacaag
gatccctacgggatccttAGTTAGGTCACAGGGTACagatgcccctaaga
aggccttcggccttatattgtgactctcgagctccaaccctaaccctaac
tgataataaccaaaNgcccctaagaaggccttcggccttatattgtgact
ctcgagctccaaccctaaccctaactgataataaccaaacccccgtctag
gtccgcagattgaaaaatttcacttgcatcctggtggatgatatcgtctg
ccaaccaaAGAAAACATGGCTGCACGTGCTGCTGTTAGGAAAGACTCAAC
AAATTCCAAGTTTGAAGAACTTTGTCACCTATGGCTTTTTGAAACAGTTG
CATATAGATTTTGTAGAAGTTTTTTagatgttgaaaattgcttTGAATGC
TTGTTACATTATGGTAGTATCTGGAAGCGtaagatatttttctcttcact
gttttACCCCAGTCTGGAAATTACGGCTTGTGCACCAGATATCTCCGGCG
TAGATTTGAGGTTTGAGATCTGCTGCCTTCATATTTTCCCAGTTAAGTTG
GCAcagctatatttgaatgtatttttggttgaaaaattcgcgatttttag
cggttaaatttgcgattgtaaaaattgagctttttttctacttatgctat
aacgttcatttttacaccagaggtagttcaaccttaggttaagaagttta
ttaaatttcaaagcgaacagaaaagtccttcggaagatatggggcccgaa
ataccccttggtagcacttttctgtgaaatatcaaatctccaacttatta
ctaaaaacaggggttatgttatcttttttgaacagtgcaattaaaagccG
GAAAGTGTTAAGTGATGGTgaattggtattattggtatcatcattgatta
tttcgaaacgaagtgaaatcacagtataattgtttttattgaaaagataa
gcatgaacttatattgcctttgttatttttaagttgGGGGGGGGGGTTTC
AGGGGGTACCCGATTCCGTaattccgtcaattttttctccaatttccgtc
acaccgtcttaaattgaaccaaaattccgtcaccgaaaattcctttgaaa
ttcaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttaccaattc
cgaaattccgcaaatttttttgctaaattccgtttttccgcactaaaatt
gtctaattttctgtctccgtcagagaacccaatttccgtaactccgtcta
aattttcgccaaattccgccactccgtccgaaaaaagggccgattccgct
cctccgccaaccatgaaagaaatttgttaattcacaaaacactaaacaca
gtttggctatgaggtcattaaagagatcgtaaaatgtgtcatgatcgaaa
aactgttttatcatatcactacccccgtttttagtaataagttggagatt
tgatatttcacagaaaagtgctaccaaggggtatttcgggccCATATCTT
cggaaggacttttctgttcgccttgaaatttaacaaacttcttaacctaa
ggttgaactaccactggtgtaaaaatgaatgttatagcataagtagaaaa
aaagctcaatttttacaattcgCAAagttaaccgctaaaaatcgcgaatt
tttcaaccaaaaatacattcaaatatagcgcttttgattctctaaaataN
Tgggactatctatttaaaagaaatggacaaaaaaggcacttttttgggtg
ataattaagattttacttagaaactttaattctcttacccctgTCCNtaa
gcaaaaaaaatttccataatcatatttgactatcaaaagttacaggcatt
cttgtttccactgccaattatatctggacagattttaatagattttttga
aattctgtaaaaaggtccaagttcctgaatagttttactatgctCTGTTA
AAAAACCATAACCATCAgtgaaatactcgttcatctatttaagattaaag
acaaaaatttgcgaagaaaaataaaccNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNagacttaccttccccaaatattgaagaag
cctctactaattaaagtaaatgagataagataagataaaaccttaaaatc
aaccagaatttacaacattttgtctaaagcaaaagacgtgcttttctcgt
cgccatcttgttttagaatgagaattatttttcgGTTCCAGTTCCCACag
tctttttttcatccaatcagatcgcgcaatttcactttcgctttctctag
tccaataagactgcagattctctattgaaaaacccgtgcagaataaaata
gaaatacagggggtcacactactggctacaggaactgaaagcaaacaatt
aaggccaatatgtttggtttttctgaTGGACAAAAGGTATAGGAAGCTTT
ACTGAAGGAGggataaggctgggactatctatttaaaagaaatggacaaa
aaaggcacttttttgggtgataattaagattttacttagaaactttaatt
ctcttacccctgTCCcgggcccccctgatatgagcaagggaaccatattg
gccacccctactgaaaatttcagatcaaaacaaacaaggaattaattcct
gtaactcgaggaaaattggaaagagctggtttttgactgtttctgatcct
aaagtgctattttttggtaaaagctatgcaagttatgtttggatttctag
aaagcttacccattcattgtcaatatattttttatttgaaagttattgct
tcatggaataaaaagatatagtcaaatcttgtagggtcatttttcaaaaa
gattttgccaaaattgattttcgcacagtttcgcatttcgccattttacc
ctacacAAACGCACGtggattggtcagtcatttaagggctatgcatgcat
gttagcctcacactgatgcaagttaccccatCTCACGGTATATGACAACC
TCTTCCCCCAAGGCAAGGGGATTTTGTTcacttttcagattttcaaaggG
GATCATTGAGGGTTTCCAGAGTTTCCATGGGGCTCTCTCTTATATTCTCA
AACCAGGCAATAtgttgtcaataaaactttacCTGTCACTTACCTACCTA
TTGTGTACCTATTTGTTGTGGCTTCTGCTTAAACAGCTCATCCAACTCTT
AAGTCCGATGCTTTGACATTTCCTTGAGGCTACTGGAGTCAATGCAATTT
CTCTCCGATATCTGACTTTTATGGCAGAAAATACCTTTTCTTTCGTCAAA
GTGAAAATTCGGCCTTCAATGACGTTCCAGGTGTAAATTATTTGGTAACA
CTGTCTCCATCCTCCGAGGATTTTGCAAGAATATTGCTTTAGCAATTTTG
AAGGCATTAATTTTGGGAGCCAACAGAAATAAGCCATGGAGCAAAGAAGA
TTGAGTATGCATCGCCCTttaaaagtgtgcaaaattgaaaattgttcaGA
AAATGGATACCTTTTAAATGCAGATGAAGAAGGAAAATTATGTACAGCtt
aacaattttcaattttgctcCCCCCCCCACCTTTTTTAAACCGCAGCTTA
TTTCTGGCCGCCCCCAAACTTGATGGCTTTGATAGTGTTGTCTGTGAGGA
ATTACACAATTTGGATCCATAGCACTGCTCTAAACCAATCCTAAACCAGA
TTAAAACCTAAACCAAGTTATTTTGCAGACTCACAATTAAATAGGAGAAA
CTGCTTAATTCATATAAAAATCCCTTATTTATTATACAGgttatttcaaa
taaaagtgTACAAGTTTGAATTTAGTTTGTGGGAAAACTAGAAATGTTAT
AAATTTGCTTCATGtgttcaaaagatatttaaagaaaattcgaaaaaatt
ctctttcgaAAAATCCTCTTTcggaaaatcttcatttttgagaaaaaagt
gtggaccaatttttttctctttctctttctcttttgtaCAAGAAAAGAGT
GTGGAATGGGTTCTTTTAAAACAGTTCTCATTTTAATcactttaaaatca
aaaatttacgACCCAACATCCAAACTTTGGAAACAATcaacctaaaaaaa
attaagaggTCCTTCTCAGGACCATAGAAAGTACGTTTTGGTCAATTACC
TTTATAACCATTATGATTATCCCTTCAAGGTTTATCATGTTAGTTTTTTG
GGTATTatcgtatttaaaaaaaatgtaaaattcctttttcagACTTGATT
GCCTTAGATGGTCATCTCCAGAAGCAGGAACCAACATCTTGGCATTTCTT
TATTGATTTGAtcatccaaagttttgaaacagGAAACGAGAAAGGATTAC
TTCAGCTCTTGAACCaggtttgaaatgaaatttttttgttatcACGTTTT
TTAGAACTGTTTAGAAGAACATttgctttttgagttttaaaaatgttctt
aaaatgttcttattttcaccattttgtgagtatttttattcatattccta
agaaattgggtgttttataCTTATAGAGTccaaaaagcctcaaaatgttt
ttaGCTTATTCGtaacattttagccatcgaagccttaaaTAGATCATACT
CTTAATTTAGCTATTATTTGGCTCTTTACTCAGCCATTACATtcattcaa
ttttgttttagttctttgtCTATTTAAGACTTTATTTTCTACTTTAGGTT
GataaattgaattttcaaaacaaagacaAGAGAAATTTACAATTATTTCT
AAATACAAAGGTAAGTCATTTCTTGGTTCCACTTGTGGTTATTTTAGGCT
AAATTTCTCTCcttatttcaaacttttctattgtaaacgaATATTATAGT
TTCTTGCAAGTTTGAGATGGAGAAGGTCTACTAAGTGAATAAATTTCATG
AGCACAAAAGCTTTGTTTCTACTCtgcttttgaaatttcttgtcACTAGT
GTTACCTGaaaaaaatttgcataaatttgCATGGATcgaaaaataagttt
ttatttgtttttactttttattttttaggttcTGCTATGTTATTATGAGC
AGGGAAACATCAAGAAAGCTCGTCAATTTCTTCACAATAATGATATTGTA
AGCTTTGTAAAGTATTTCGAGATTGCTTAAGTCATAGTCTTTGGAAGGCC
CACATGTGTAAAGGTCTCTTTGCTTTCTTATATCCGAGTGACTCGATGCC
NTTTGGAAGGCCCACATGTGTAAAAGTTCTCTTTGCTTTCTTATATCCGA
GTGACTCGATGCCGATTTAGCATAAATTGAttagtttttgaaggaaaatc
gcTTCTAAAagtaaatttagaaaataattaTGTCGTAAAACTAGTTAGAT
GAGCCAATTTATAAGTGTTTATTAATAAATCACATAAATTTAACGACCAC
CGCACTTATCAaactttgagaatttgagaaatatatcattagcagggtaa
cttatttgtgaCCCTCCCgctatatttaaaaatatttttaaacttttttc
atcagCTTCATGTGCAAGAGATTTCAAACCTACTTCAACAAACTGATTCA
ACATACCCTGAAGTGTTGGATGTTAAGAACTTACAAGCATTCATCCATCC
TGTCATTGAGGAGTTACTACAAAAAGTTGGAAAACCTAAACTGTATAGCC
TGGTTAGTATTGTTATTGCTATAGCAATTACCTTAAATTTGGTCTGGAAT
CTTTTTACAAATATagaatcttaaatttttcatctaatttctttcatttt
cctagggcttTTTGGAAAAtactgattttaaaatttttgtgactttaatt
tcgcaaaaatgacagaaattcgcgaaagtcgCGAAAATCAATCAATTCAT
TTAATCCACTTGAGGTAATTGACTAATGGTTTAAAGAAATTTGGAAGGCA
ACTTGTGTCATTTGGTCAAAGTTATCAAACTATATTTTGCATGACTTTAT
AAGGATTTGAAAAATCTATCACTTTTCACAGGTGTCAGCATTGTTAAGTG
AAAATGAGAAGACATTGAAAACACAAGAAACACAAACAGAAGAGCATAGA
CCGAAAGATTTACTTTTATCGAAATCAAAGTCAGCATTGGATCTTGTCAA
ACAACACAAAGAAGCAAATCACACCAAAAGTAGCTCGTCTTTTGTCATGT
CACCGACAGGAAAAATACTCATGTCTCCATCTATAGCAAGCTGCGCGAAA
ATATCAATCTCCGATCCTGCATTAACACCATGTAAAAAGAACTTATGGTC
CAAAGATCAACCGGATGATATCAAAGACAACAAACGACCAAAATCTCCAA
GGTTTGTTCAACAAAGAGACTTTTCCTTCAATATGTAGGTCCTTTAAAGA
TCTCAAACTACAAACTGCTGCAAAATGTCGGTTATGTTTGAATCTTCGGC
TCGTTGATTGATATTCTATAGGGTAACTAACCTTTAAACTAGAAAATTGT
CGAAATATTAATAGTGGCGTTTTCTTTTACGCTATTATAAATTGAGAAAT
GTGAGTGGAATGCTTGCGTCAAAATTTGATCTTTGAATGTTCATTCCCTA
ACTGGTTTGGTGTCAAAAAATAGAATATTAACTTTactaaaaagcctaaa
aatatgtTCTCAAAATTTCTTATCTATATCAATTCCAATTGAGCAACACC
AAGCCAAGGCTAGTTCAAATACGTGTGGATAGAGTTTAAAGTAAATATCT
TGCATATGTTTTTTCCTGGTGTCGCAGTTATCATTTTCTTTAACATTTAT
TTACAGTATTTTCATCACTCTCTTATTTAGACGTAGTCCAAGGAAAACCA
GATCTTCCGATATAGAAAAAACAGTCAATTTTAAGTTAAAGTTATCTTTA
CGATCACAAAAGAAGAACAAACCTGAAACAACATCCGAGACTAACAGATT
ATCAACCAAGAAGGCTCATAAACCTCAACTCGAATTCACGTCTaataata
aaaaacagaaaacgCAAAAATCTCTCGAAGCTGATATcgattttgaaaat
gagaataTTTTACCAGCAGATGATGAAGAATCGCCAGACCTGTTTGCCAA
ATTGCAAACATCCACGCAGAATGAAGAATCAAACGAGCTTCACTCATCCA
ATAACTCGGATATACTCGGTGACAAACGGCTCACCATCTCCATATCACCC
ATCCCTACATCTTACACTTATGTGACAACTCTTTCACAAGAACAAGAAGA
GGCCATTGCAGCAGCTACCAAAACAACCAACGACAATAAGCTGCGCTTTA
GAACAGCGAAAACTAGAGATcaagaaaaagatgaaaactCTTCCAGGTAA
CACAAATTACTCAAGTACTTTTTATTGGGACTCATTCCCACACATCCTAA
TCCACAAATTTTTGAAGGATTCAGCCGGAAGTTTTAACATTTTACACATT
TAATGTTTAACTTTTAAATTTAATGTTATTCCCATCTCTACTATTGCAGT
AGTCAAGAATCTATTGGCTCCAAAAGAAAACCATCTGTAGCCATACCACC
CTTATGCCATCGACCAGTTGACCAAAAGAATCCTTCCACAAAATCAAGCG
AAGCTGAAGAAAGTCCTTACTTCAACAGCAGTCGAAAGCGTCCGCTTGAT
GTAACGCCAGAggagaaatcttcaaaaaagagGAGCATTCCACCGCCAGG
GGCAGGGCGTCGTCGGAAGGATGTTACCAGCAATGATGGTGATGAAGACT
CAGGGGAATCTATTACCTGGGAATCACCTGAGAATGATTCGGAAACACAA
CGTACCAAAGCTGCCCGACAAATGTGCAAAAGAAATAGTAAGTCTTCTAT
CCATAAAGTATTCAATTTGATAATTACCCATTGCATACTGTACTGGCTAT
TTCCGttacttctttcaatctttttctctTTCGTCCATTTACCTTATACA
TAAGCctatatttttccttctttagtacttctatatattaatagcggtgc
tttgtgtgtctgtgtgtcaccactttcgttttcgctttgtttgtgttttg
aaattatgacttttagtctatTGCTACANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTTTCGTATATAAATTGGACACGACAAAGGCCAAATATAGAGCCGA
CTTTATAAATCCGAAATagactatgatttttttcatcctgaaatactccg
gaTTCAAAAAGCAATATCTTAAGTTCCATAAAAGCTATTAAGATCGGACA
AAAAGTATCGGACAGAGCTACtaatctatttttttattttcgaataacga
taagaaagggttcagctgtctctgttagtgccgatttgaaccgtgttggt
tgaaaatcggcattttggtacagtaaaaaaaaaacatgtccctATCCATA
AAGTCTTCAATTTGATAATTACCCATTGCATACTGTACTGGCTATTTTTT
CCGttacttctttcaatctttttctctTTCGTCCATTTACCTTATACATA
AGCctatatttttccttctttagtACTNGATCGCTTTTtaaagccagctt
caacatccaaaggacttttagtgcgttcagctacagcttaaccggcgtgc
gacgccgggtaccggctagtaaaGCAATAATGCTACTGTGACAGCCAGAA
AATCTCATTAAAAAGTGGGCTAAAATCAATACCAAGAGCGGAGTGAGTGT
AACTGATTTGTTTATTGAAGTTAAGCTGTTTAGCTCATAGAATGTGAACA
GTTagtataaattttaaaatatttctgaattcaaaggttttatttttacg
ttCCCGTTTTATGTCAGGCACATATCAGGACAGCGTCTCTCTATTGTTat
gtgctgaataaacaaaaaattgtttttctttttcggaccaatcttgctcc
acatccgtgcctattcaatatcaaaaagcttataaatcaaaattaacgag
taagcaaacgatatcacacTTATCTGtcacatctttttaaaaaacaaatt
ttttaagAGGCATTGGATTTCTTATAATTTTACATTAttaattcaacttt
ttttcatttcttagaTACTTCCATCAATACTAAACGTAGAGGCAGAGTCT
GTTTCAcaaaaaaggaagaagaaaaccTTTTGGAGGGTGTCAAGAAATAT
GGTTTTGGTTGCTGGGCGAAAATTTTGAACAATTATCATTTCAATCCATG
TCGGACGAGTGTTTCATTGAAGGACAAGTACCGGACATTACAGAACCAGG
GGAAAGTGTAGTGTATTATTAATTTGTCCCCTTGTTTAATGTAGTTTTTT
GACCTCGGATCGATGCGATGCTTGAAAAGTTAAAGTTATCAAAATAGTGA
CGTTTACTCTTACGACTTGAAGAGTGAGGCCAATTTAGCTGAGATGGCAT
TTGTGTCATAAAAGCTGGACATTGATATGGAATTTCAACAGGATGAAATA
ACTAAAAACGGTCATAAAATGCATTTCCATGGTCCTATTTCATATTGTAT
ACGATTTCAATACTTTTGTTATTggaatgatttttatttttcattccttt
ttattttgatttattattcTTTGTTGTAAATATTGTACATATTTACCTGC
GTATAACCTTTGTGTGACTTATATATTACTCCAATGTCTGTCAAAGCTAG
ACTAATTCACCTTTAATATGTGTATGATCTCTTTATATAATAATCATTAC
CTACCTTAACTTCCATGTAATTTTTTGTATTTGTGTGTACAATTGTAGGG
AAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015904TCONS_00015904Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015904-proteinTCONS_00015904-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:326685..336837 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.18	34.54	44.44	40.63	57.31	47.82	30.17	35.28	23.51	22.51	20.16	16.75	10.13	11.65	6.79	7.71	13.89	12.19	2.67	3.15	10.06	10.23	21.85	21	41.97	43.81	5.34	4.66	15.13	17.47