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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023344 ID=TCONS_00023344|Name=TCONS_00023344|organism=Clytia hemisphaerica|type=transcript|length=4697bp
TATCTTTCCATTCGAACTTTGTACTTTTCATAGTGCATTAtatattgttc
aattgtttgTTCTTCTTTCCGAGAAAGAGTTCGAAATTCCTTCCATGTTT
CAAATGCGGAAGTATTATCATCCTTACAATAGTAAGTCTCAATCAATTCA
ATGACTCTCTCCCAGCCATTatctcctttcatttcattagTATCAAAGGT
GTCAAAAACCTGGCGACGAATTTCACTATTGTTCGGTAAGTGTAATGCCA
GTTGTAAACCATGAACATTTTTAAGTCCTGCAACTCCTGCAGTAGCCTCT
TTCCAGGCTTTCACTTCACGTAACCATAAAGAAAACTCCTTGTTTTCTTC
GTCCCACTGAGGTGGGTTTAGAAAACCACTACTTGCCATCACAACCAACG
TCTGCTACCATGAAAGAAATGATACGGATCGAGTGATTGATAGTGTAAAA
CCCACCAAAGTGTTAATGTACTACTCTATAAAATATAAACGTAACATAAT
GTAGAAACAACAGGAATGTTGACATTAACTTCATTTGTAGTCTGGTAATT
AGGAGATTTTAGGAGAGTTCATCAGTCATATTTTGGAGGGATCCTATAAG
ATAAACCCAAAATTAAAAACGTACCTCCTACTTTCTGGTTTCCTTCCAAT
TGAATTTCCTTCGTGTTTTCCAAGCTATCACTTTGGAGCGTCAAAAACGC
TAAATTTCTGGTTTTCTTCGCtgctttttgttgttgttattctaagctat
gactttggagcaCCAAAAACGCTAAATTTCTATTCGCGTGGTCGATCTAG
CTTAAAAGCTCACCCGCAAGGCGATCTATTAGATGTCGCCACTTGGTTGC
ATCGTCCCGCTTTTTTTTCTTGCACAATTTTGTGAAAGCTCGATCCCCAG
CCGCCTCGTGAAGCAACAAAGCTCCCTTCGGGAGCAATAACTGATTCTTG
TAAGTTTTACTTTTCTCTGGTAAAGAGTACTCTGTACATTTATCCTTCTT
TTATGTTACGGAATTGGAAATTGGAAATGGTGCTTCAATCTTTCTTTTAC
TAACATATTTGTGATTGACAAAGAAAACCacgagaacttttaaaatcttt
attaaataAACCTGACGTAACCAAAGGTGTTTAGAAAACAAATAATATCA
CattcgcatccattcggatcGGTACCATTACAATTATTTGATTGTTGGAG
AAcgaaaataaatattcaaatcaaaacagaaaTCGAATCTTAAAAATAAT
ATACGAATGTGACTCGATTCGTAACACCCTGGGATTTCAATACAAAACTA
TTCatttgaatgttgtaaattgaaattcgttttgattttttttttactat
acttgTGATCATGGTGCAAAGAAGACACCAAAACGTCAAacaatgaataa
aattaaatttttagttttcactatttttatcaaaactattCAGCTCATCC
ATAACCACCTTTGCAGCGTCTGGACGACCAATCACCAAAAGTGCAGTATA
TAACTGTTCCTTCGTAGGGTTTTCCCCCGTAACATAATCATCCAAAAACG
ATCTTTCGAGGATTCAAGCGTATATAACCAAGCTTATCCGCGAGGTGCAT
GTAATTTGAACCCAAGTAATCCGTACCTTTATCTTTGAAGATCCAATTTC
CAAAGTCAGAATCACTGAATATCAATGAAATTGGAGCagcaatttcattt
tattttattttattttatttaagggctctgaccattgggaattttttttt
accatgCATAATATATCAGTTTCTGCCTGATATAACCAGCAAAACTACGA
CATGTTATACATGTTCTGTTAGACCATTATTCAAGAttctgaaaatttaa
actttatgtAGAAGAAATATCTGTCGGCTTACCCTGGAGTGACATTGTTT
ATCATATAGATTCGAATATGATCTCATTCAATCAGGGGTAAACTCTGAAG
GGGGACTGACCATAACGGCCGACGGAACCGCGCCGATAGAGTATGAAAAG
TGGACTCtgttaaatatgattttttgataaaattatgaCCCTGTAGAACG
AAAAATCTTTCCCAATTTGTAGTAATGTAAACTTGACATGTTTTATGTGT
AACTCTTTCTAAAATCCATGAATCTAAACTTGGTCCTCGTTTGATGCCAT
GTTGAATCTTTTTCGCACGCTTTACTgaactttttttgaagttgcTGTAA
CTTTGTTtgtctttgaaatttctctTGTGAACCTTTCTTTCTGCCAAAGA
TCTGGTAACCCTATATCATGCATCAACTTGACTCACCACGTGAGACATGT
AAGACAATATTATATCATAAAACTCTTCAGTGTCCAAATACTCAAGTTTT
AGTATTATATCACTATCATAAGAAAGCGTAGAACTTCTTTATTccacagt
tttttttctttgtgttttttcaACATCTTCCGTCAAGACGCTTGTGTCGT
ATTTTCTTAGTTGCAAAGGTACTAGAACACCCCAAATGTTCAAAGAAATG
ATTTATGATTTCAAAGGGTGTAAAGTTTGGAGGTTTTGACCCACTACATT
TGGGTTAAAACATAGTATTTATGTTGCCTTagcttctttcttctttctta
atttttttcacaaaggGAGGGGTGAGAAGCACTTCACattttttgggggg
acctgTGTAAACGTTGTCAATTTAACAAACAATGGATTAGCTTCAaagta
aatttcaattttcaactgtGATTGTTTTTCATTATTGCGCCTCTTTTGAT
CGGTGTTTGTTCCGTCTACAGCTTCCTTCATTACATCTTTtggtttattt
tcaatattgaaATATGATTCacttgtattttcattttctattaCTCCTTA
CCATCTGAGGGTTTTGTTTCGGTAGATCTTTGGCTGCATTCTTGTATGTC
TTTTAACATTACATTCGGCTAAAGTAATAAAATCCAATAGTAATAGCGAC
CGTCTTTCAGCGAAATTGTGGGGTTTGAGCGTCGTTTTGAATCATGCGAT
CCATAAATCTCACTGCTACTTTCTTATTACGTTGATACCGTTCTTGGCAT
ATTGAACATCGAAATTCTGCATCTTTTTCATCCAATGGTCGTCATCTTTC
TTTTACTAACATATTTGTGATTGACAAAGAAAACCacgagaacttttaaa
atcttcattaaaTAAACTTGACGTAACCAAAGGTGTTTAGAAAACAAATA
ATATCACATTCGCATCCATTTTATGATCGGTACCATTACAATTATTTGAT
TGTTGGAGAAcgaaaataaatattcaaattaAAACAGAAATCGAATCTTA
AAAATAATATACAAATGTGACTCGATTCGTAACACCCTGGGATTTCAATA
CAAAACTATTCAGCTCACCCATAACCACCTTTGCAGCGTCTGGACTACGA
ATTACCAGAAGTGCAGTATACAACTGTTCCTTCGTAGGGTTTCCTTCCGT
AACATAGTCATCCAAAAACGCCTCTACAGGATCTTTCGAGGATTCAAGTT
TCTTTATGAAAGCGTATATAACCAAGCTTATCCGTGAGGTGCATGCAATT
TGAACCCAAGTAATCCGTACCTTTATCTTTGAAGATCCAATTTCCTAAGT
CAGAATCACTGAGTATCAATGAAATTGGACCagcaatttcattttatttt
aaacttttctcttgacacttaccttgtttacacataaaaataccaaaaaa
tgcaactgtgttcatcaaaactcgtcacggaatttaagaatatggtaaaa
caaNTTGGGAATTTTTATATTTACCATGCATGATATATCAGTTTCCGCCT
GATATAACCAGCAAAACTACGACATGTTATACATGTTCTGTTAGACCATT
ATTCAAGAttctgaaaatttaaactttatGAAGAAGAAATGTCTGTCGGC
TTACCCTGGAGTGACATTGTTTATCATATAGATTCGAATATGATCTCATT
CAATCAGGGGTAAACTCTGAAGGGGGACTGACCATAACGGCCGACGGAAC
CGCGCCGATGGAGTATGAAAAGTGGACTCtgttaaatatgatttttttat
caaattatgaCGCTGTAGAACGAAAAATCTTGCCCAATTTCACCCTCAAA
GGTGACAAtggtcgaacgtgcgcaacgtaCGGGGCTCAACTttagtattt
tttaaatgatttgtAGGCCCGGTTATAACATTGATATTCCAAGTTGAGTc
gaaattttcagccaaatctgaaCGACTCTTGACATCTCCAGACTGCCCTG
AAGTTGAAGCTCTCTGTTTAAGTCTTAGTATTAAGTATAAGTTTAAGTCT
CTGCGAAATACCTGGGGaggaaagttaaaattttaagaaagtgAAAAGAA
CATCTCTAGATATTCACTCAAGGATGTAAGTATGCAATTACTTCAGTTTA
AAGAAttattttacaagatttttcaaGTCTGACTGAAGATTGTTGTTGTC
TTCATTTTCTGTTGATGATAAAATCTAAAGGAAAATTTCTTTGTCAATGT
ATTTTANAAGGATGTAAGTATGCAAGTACTTCAGTTTAAAGAAttatttt
acaagatttttcaaGTCTGACTGAAGATTGTTGTTGTCTTCATTTTCTGT
TGATGATAAAATCTAAAGGAAAATTTCTTTGTCAATGTATTTTAACTTTA
TTAGAATAAAATAGACCTTTCCATAAAAATTTGCCACAGAAATAACC Run BLAST on NCBI transcript from alignment at sc0000452:61986..67084+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023344 ID=TCONS_00023344|Name=TCONS_00023344|organism=Clytia hemisphaerica|type=transcript|length=5099bp|location=Sequence derived from alignment at sc0000452:61986..67084+ (Clytia hemisphaerica)
TATCTTTCCATTCGAACTTTGTACTTTTCATAGTGCATTAtatattgttc
aattgtttgTTCTTCTTTCCGAGAAAGAGTTCGAAATTCCTTCCATGTTT
CAAATGCGGAAGTATTATCATCCTTACAATAGTAAGTCTCAATCAATTCA
ATGACTCTCTCCCAGCCATTatctcctttcatttcattagTATCAAAGGT
GTCAAAAACCTGGCGACGAATTTCACTATTGTTCGGTAAGTGTAATGCCA
GTTGTAAACCATGAACATTTTTAAGTCCTGCAACTCCTGCAGTAGCCTCT
TTCCAGGCTTTCACTTCACGTAACCATAAAGAAAACTCCTTGTTTTCTTC
GTCCCACTGAGGTGGGTTTAGAAAACCACTACTTGCCATCACAACCAACG
TCTGCTACCATGAAAGAAATGATACGGATCGAGTGATTGATAGTGTAAAA
CCCACCAAAGTGTTAATGTACTACTCTATAAAATATAAACGTAACATAAT
GTAGAAACAACAGGAATGTTGACATTAACTTCATTTGTAGTCTGGTAATT
AGGAGATTTTAGGAGAGTTCATCAGTCATATTTTGGAGGGATCCTATAAG
ATAAACCCAAAATTAAAAACGTACCTCCTACTTTCTGGTTTCCTTCCAAT
TGAATTTCCTTCGTGTTTTCCAAGCTATCACTTTGGAGCGTCAAAAACGC
TAAATTTCTGGTTTTCTTCGCtgctttttgttgttgttattctaagctat
gactttggagcaCCAAAAACGCTAAATTTCTATTCGCGTGGTCGATCTAG
CTTAAAAGCTCACCCGCAAGGCGATCTATTAGATGTCGCCACTTGGTTGC
ATCGTCCCGCTTTTTTTTCTTGCACAATTTTGTGAAAGCTCGATCCCCAG
CCGCCTCGTGAAGCAACAAAGCTCCCTTCGGGAGCAATAACTGATTCTTG
TAAGTTTTACTTTTCTCTGGTAAAGAGTACTCTGTACATTTATCCTTCTT
TTATGTTACGGAATTGGAAATTGGAAATGGTGCTTCAATCTTTCTTTTAC
TAACATATTTGTGATTGACAAAGAAAACCacgagaacttttaaaatcttt
attaaataAACCTGACGTAACCAAAGGTGTTTAGAAAACAAATAATATCA
CattcgcatccattcggatcGGTACCATTACAATTATTTGATTGTTGGAG
AAcgaaaataaatattcaaatcaaaacagaaaTCGAATCTTAAAAATAAT
ATACGAATGTGACTCGATTCGTAACACCCTGGGATTTCAATACAAAACTA
TTCatttgaatgttgtaaattgaaattcgttttgattttttttttactat
acttgTGATCATGGTGCAAAGAAGACACCAAAACGTCAAacaatgaataa
aattaaatttttagttttcactatttttatcaaaactattCAGCTCATCC
ATAACCACCTTTGCAGCGTCTGGACGACCAATCACCAAAAGTGCAGTATA
TAACTGTTCCTTCGTAGGGTTTTCCCCCGTAACATAATCATCCAAAAACG
ATCTTTCGAGGATTCAAGCGTATATAACCAAGCTTATCCGCGAGGTGCAT
GTAATTTGAACCCAAGTAATCCGTACCTTTATCTTTGAAGATCCAATTTC
CAAAGTCAGAATCACTGAATATCAATGAAATTGGAGCagcaatttcattt
tattttattttattttatttaagggctctgaccattgggaattttttttt
accatgCATAATATATCAGTTTCTGCCTGATATAACCAGCAAAACTACGA
CATGTTATACATGTTCTGTTAGACCATTATTCAAGAttctgaaaatttaa
actttatgtAGAAGAAATATCTGTCGGCTTACCCTGGAGTGACATTGTTT
ATCATATAGATTCGAATATGATCTCATTCAATCAGGGGTAAACTCTGAAG
GGGGACTGACCATAACGGCCGACGGAACCGCGCCGATAGAGTATGAAAAG
TGGACTCtgttaaatatgattttttgataaaattatgaCCCTGTAGAACG
AAAAATCTTTCCCAATTTGTAGTAATGTAAACTTGACATGTTTTATGTGT
AACTCTTTCTAAAATCCATGAATCTAAACTTGGTCCTCGTTTGATGCCAT
GTTGAATCTTTTTCGCACGCTTTACTgaactttttttgaagttgcTGTAA
CTTTGTTtgtctttgaaatttctctTGTGAACCTTTCTTTCTGCCAAAGA
TCTGGTAACCCTATATCATGCATCAACTTGACTCACCACGTGAGACATGT
AAGACAATATTATATCATAAAACTCTTCAGTGTCCAAATACTCAAGTTTT
AGTATTATATCACTATCATAAGAAAGCGTAGAACTTCTTTATTccacagt
tttttttctttgtgttttttcaACATCTTCCGTCAAGACGCTTGTGTCGT
ATTTTCTTAGTTGCAAAGGTACTAGAACACCCCAAATGTTCAAAGAAATG
ATTTATGATTTCAAAGGGTGTAAAGGTTGGAggtatttttcaggttttga
cCCACTACATTTGGGTTAAAACATAGTACTTATGTTGCCTTagcttcttt
cttctttcttaatttttttcacaaaggGAGGGGCGAGAAGCACTTCACAT
TTTTTTGGGAACCTGTGAAAACGTTGTCAATTTAACAAACAATGGATGAG
CTTCAaagtaaatttcaattttcaaccgTGATTGTTTTTCATTATTGCGC
CTCTTTTGATCGGTGTTTGTTCCGTCTACAGCTTCCTTCATTACATCTTT
tggtttattttcaatattgaaATATGATTCACTTGTATTTTCATTTCCTA
TTNTAAAGGGTGTAAAGTTTGGAGGTTTTGACCCACTACATTTGGGTTAA
AACATAGTATTTATGTTGCCTTagcttctttcttctttcttaattttttt
cacaaaggGAGGGGTGAGAAGCACTTCACattttttggggggacctgTGT
AAACGTTGTCAATTTAACAAACAATGGATTAGCTTCAaagtaaatttcaa
ttttcaactgtGATTGTTTTTCATTATTGCGCCTCTTTTGATCGGTGTTT
GTTCCGTCTACAGCTTCCTTCATTACATCTTTtggtttattttcaatatt
gaaATATGATTCacttgtattttcattttctattaCTCCTTACCATCTGA
GGGTTTTGTTTCGGTAGATCTTTGGCTGCATTCTTGTATGTCTTTTAACA
TTACATTCGGCTAAAGTAATAAAATCCAATAGTAATAGCGACCGTCTTTC
AGCGAAATTGTGGGGTTTGAGCGTCGTTTTGAATCATGCGATCCATAAAT
CTCACTGCTACTTTCTTATTACGTTGATACCGTTCTTGGCATATTGAACA
TCGAAATTCTGCATCTTTTTCATCCAATGGTCGTCATCTTTCTTTTACTA
ACATATTTGTGATTGACAAAGAAAACCacgagaacttttaaaatcttcat
taaaTAAACTTGACGTAACCAAAGGTGTTTAGAAAACAAATAATATCACA
TTCGCATCCATTTTATGATCGGTACCATTACAATTATTTGATTGTTGGAG
AAcgaaaataaatattcaaattaAAACAGAAATCGAATCTTAAAAATAAT
ATACAAATGTGACTCGATTCGTAACACCCTGGGATTTCAATACAAAACTA
TTCAGCTCACCCATAACCACCTTTGCAGCGTCTGGACTACGAATTACCAG
AAGTGCAGTATACAACTGTTCCTTCGTAGGGTTTCCTTCCGTAACATAGT
CATCCAAAAACGCCTCTACAGGATCTTTCGAGGATTCAAGTTTCTTTATG
AAAGCGTATATAACCAAGCTTATCCGTGAGGTGCATGCAATTTGAACCCA
AGTAATCCGTACCTTTATCTTTGAAGATCCAATTTCCTAAGTCAGAATCA
CTGAGTATCAATGAAATTGGACCagcaatttcattttattttaaactttt
ctcttgacacttaccttgtttacacataaaaataccaaaaaatgcaactg
tgttcatcaaaactcgtcacggaatttaagaatatggtaaaacaaNTTGG
GAATTTTTATATTTACCATGCATGATATATCAGTTTCCGCCTGATATAAC
CAGCAAAACTACGACATGTTATACATGTTCTGTTAGACCATTATTCAAGA
ttctgaaaatttaaactttatGAAGAAGAAATGTCTGTCGGCTTACCCTG
GAGTGACATTGTTTATCATATAGATTCGAATATGATCTCATTCAATCAGG
GGTAAACTCTGAAGGGGGACTGACCATAACGGCCGACGGAACCGCGCCGA
TGGAGTATGAAAAGTGGACTCtgttaaatatgatttttttatcaaattat
gaCGCTGTAGAACGAAAAATCTTGCCCAATTTCACCCTCAAAGGTGACAA
tggtcgaacgtgcgcaacgtaCGGGGCTCAACTttagtattttttaaatg
atttgtAGGCCCGGTTATAACATTGATATTCCAAGTTGAGTcgaaatttt
cagccaaatctgaaCGACTCTTGACATCTCCAGACTGCCCTGAAGTTGAA
GCTCTCTGTTTAAGTCTTAGTATTAAGTATAAGTTTAAGTCTCTGCGAAA
TACCTGGGGaggaaagttaaaattttaagaaagtgAAAAGAACATCTCTA
GATATTCACTCAAGGATGTAAGTATGCAATTACTTCAGTTTAAAGAAtta
ttttacaagatttttcaaGTCTGACTGAAGATTGTTGTTGTCTTCATTTT
CTGTTGATGATAAAATCTAAAGGAAAATTTCTTTGTCAATGTATTTTANA
AGGATGTAAGTATGCAAGTACTTCAGTTTAAAGAAttattttacaagatt
tttcaaGTCTGACTGAAGATTGTTGTTGTCTTCATTTTCTGTTGATGATA
AAATCTAAAGGAAAATTTCTTTGTCAATGTATTTTAACTTTATTAGAATA
AAATAGACCATAGGTCATGGAATTTACATcgtttcttttaatttactttc
gTGGACACAAAAAAATNACTTTCCATAAAAATTTGCCACAGAAATAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023344-exon-sc0000452-1491911889:61986..64510 | TCONS_00023344-exon-sc0000452-1491911889:61986..64510 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1510915933:61986..64510 | TCONS_00023344-exon-sc0000452-1510915933:61986..64510 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1575043694:61986..64510 | TCONS_00023344-exon-sc0000452-1575043694:61986..64510 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1491911889:64853..66994 | TCONS_00023344-exon-sc0000452-1491911889:64853..66994 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1510915933:64853..66994 | TCONS_00023344-exon-sc0000452-1510915933:64853..66994 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1575043694:64853..66994 | TCONS_00023344-exon-sc0000452-1575043694:64853..66994 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1491911889:67055..67084 | TCONS_00023344-exon-sc0000452-1491911889:67055..67084 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1510915933:67055..67084 | TCONS_00023344-exon-sc0000452-1510915933:67055..67084 | Clytia hemisphaerica | exon |
| TCONS_00023344-exon-sc0000452-1575043694:67055..67084 | TCONS_00023344-exon-sc0000452-1575043694:67055..67084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:61986..67084 + |
Blast
The following BLAST results are available for this feature:
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