TCONS_00020214-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020214-protein
Unique NameTCONS_00020214-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length153

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020214-protein ID=TCONS_00020214-protein|Name=TCONS_00020214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MDSMTQRERDILEESFGLYDTCGDAKIEISLLGEALRGLGLNPTESDVQK
IVKELDSAGSRRISFEEFLPIYQSLASRGGNDRNKKNKTDFLECFRVFDR
EQNGTISAGELHHVMTSLGEAMTPAQMDLLCQGLEDKNGMINIEQFVDQV
MNG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011348XLOC_011348Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020214TCONS_00020214Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 47..75
e-value: 3.9
score: 13.0
coord: 90..118
e-value: 2.3E-4
score: 30.5
coord: 11..39
e-value: 25.0
score: 6.5
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 91..119
e-value: 3.7E-5
score: 23.2
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 12..73
e-value: 9.1E-9
score: 35.6
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 136..153
score: 5.141
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 7..42
score: 8.516
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 43..78
score: 10.72
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 86..121
score: 12.895
IPR002048EF-hand domainCDDcd00051EFhcoord: 90..151
e-value: 4.44729E-10
score: 51.0093
IPR002048EF-hand domainCDDcd00051EFhcoord: 12..69
e-value: 4.44209E-9
score: 48.3129
NoneNo IPR availableGENE3D1.10.238.10coord: 37..76
e-value: 9.0E-11
score: 41.3
NoneNo IPR availableGENE3D1.10.238.10coord: 1..36
e-value: 7.2E-6
score: 25.3
coord: 80..113
e-value: 3.6E-12
score: 45.5
NoneNo IPR availableGENE3D1.10.238.10coord: 114..152
e-value: 5.7E-9
score: 35.3
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 3..150

Blast
[Close]
BLAST of TCONS_00020214-protein vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 9.837e-36
Identity = 59/151 (39.07%), Postives = 98/151 (64.90%), Query Frame = 0 
Query:    4 MTQRERDILEESFGLYDTCGDAKIEISLLGEALRGLGLNPTESDVQKIV--KELDSAGSRRISFEEFLPIYQSLASRGGNDRNKKNKTDFLECFRVFDREQNGTISAGELHHVMTSLGEAMTPAQMDLLCQGLEDKNGMINIEQFVDQVMN 152
             ++ ++D  +E+F L+D  GD+KI +S +G+ LR LG NPT ++V+K++     +   +++I FE+FLP+ Q+++    N++++    DF+E  RVFD+E NGT+   EL HV+ +LGE M   +++ L  G ED NG IN E FV  +M+
Sbjct:   47 FSKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAIS----NNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
BLAST of TCONS_00020214-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL19.837e-3639.07Myosin light chain 1/3, skeletal muscle isoform OS... [more]
back to top