XLOC_006423 (gene) - C. hemisphaerica

Overview
NameXLOC_006423
Unique NameXLOC_006423
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000128:559546..567958+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006423 ID=XLOC_006423|Name=XLOC_006423|organism=Clytia hemisphaerica|type=gene|length=8413bp|location=Sequence derived from alignment at sc0000128:559546..567958+ (Clytia hemisphaerica)
TAACTATAATGTCAAgctcaagatgtcaattaatgtgatcaaaaaagtgt
aagttgtaaaaataattacctctattattctgaatccgttgctcgtgttt
aaaacgttaacaatttatgtcatgaaaaattatgttttgtataacaGAAA
CAATTGTTGTAATTTAGTTCAATTGGGTCAGTGTATCAAAAATCTCTctg
tttagttgacactttggtatctttgttgcgtcacagcaaaaggtttgttt
tcattttagtttgtatctttgaaagaccccattggATTTAGGTAGGgttg
tcggatttaggaccactcacggtactgaCTTTATTCCGGGCTGCCGGAta
caataaacgtcaagctgttaagtctgagaactgtcgaaatggcaatcgcg
tgccaggacaaagtttttgcaaacAAGGGAAGATACGAGGTGCcgtagta
tagtggtagtcgaccttggcttctgtgcaggcgaccagggttcgattccc
acttacggcagttcacttggcaagtgaacgttccttcgcccgggtcaacc
catgccatatgaggggaattgggtagtcagttcaaggtgctgacgggacg
ctcattagtaactTGTGgaattatttatttcttttttatttttacttttt
tctatcCTGAGCTAGTCCTTTTTGTCTCTTCTGATTTTACTCTTTGTGTC
TTGTGTCCCCATNcaaaaattgattgaaaacagggaatttccccacaatc
tgcataatttatgcaaaattatagcacttttttaccacaaaaacgcccat
aacttttgatctagaaatcagcaccctcaaattgaccaagaaagatatca
aaagtttattcaccgacattctgaaaaaaagtgaaacgttttgagGTACC
TGGCCATGGTCTATATTGCTTCAAAAAGTGtcagtgttcgattaggttcg
ataaatttttttaatcgaactttaatcgttcgatggagttcaattagttt
gactgttcgattggttcgacaagttttgattggtgaaggcttcttcgtaa
aagcgaaAGAGATGtacctatttttcggatccggcatgcgggaaccagta
tggatttcgtgtaactaacgccGAAGTTCTTCGGCGTAANtgatatgaaa
atatttattttaatagtttttaatttccaaattaaaaatatttttcctat
aATTCCTACAATTTTCTACTTAGCTTGGCATGGCATGTAATCGTCTCGTC
CCAGCTCACTCTTACACTTTGATATTTGAGTCTACACCTACTTTTGTGCT
TTCCATTTATCAGCGTCTTAGAACATCTTGCGCtagatgtttttaacttt
ttattttattttatcctttatgtttaaaatcacgaaaatgtacGTAATGT
ATTATGTGATAATTCAAAAGAACTAGAactagtaagcgtctatagttgcg
agaataggcctctaaagcctcctgcaactcaaccaaatagaaatagaaat
agaaaatagaaacgAGGagttaatatcatcgaactaatcgaactttttac
tgaccgaactaatcgaactgctattaGGCCGTGGCCAGTAGAttgttatt
gtttcaaaaataaaaaataaaataaaaaatgtctgTGAANttttggcgca
ttggcgtaagggtacttacaaagattgtttgattttcagttggcgtaaag
taataattccagctcggcgtgaatgactccatgTAATCCATCAATTTTTA
GCttccatttggctaaatttgctttcgctcgcttgcgctcgcgtcaattt
attaattatgttggcgcgtgcgcctcttttcccatCTTGCACCCTTATTg
aaaaattgaatgttggtacaaaagaaattttgcttggcgtgaggcttgct
gcacggaaaaatatcttcggcgcgagatttcgtggaatccatactggtgc
gggaatagtgtcagaacctacaggcgacctggtagggttgggtatgggtg
tggtttgggtgtggttacgtatcagattggctaggaatttggttattatc
agttagggttagggttggagctcgaaaaaagcactcttttgCGATTTTCT
CTcatctcttaatacagtctggtctgtagtttgtacaatataaatagccg
tcagaaacgcTCTTTCGGCATGAATCCTTGggcattgggtttcaaaacat
cggaactttgcatttagtgggttcgaatcccaccggtggcgatctgtcgg
taagtcattcagtaagttagaaaacatagtagataactcacacagaacca
gacagtcagaaaaactacgaacaagagactggaaagtacaaaataagtcc
agatctgtctttcgtctttacgaagaagccatgCATGACCGTTGTTTTGA
TTGATCAGCAGGTCCCAggtagatagatagatagatagatagataaatat
ATTTACCGGGGACGATCGTAAAAATATATACATGTTCGTAAGAGCATATA
AATGTACATTCGCTCTAGTTTTATGGTAATAAATGTATCTAGAATCAACA
GATGATCGCTATAACGTATATAAACAAAATCttatgaaaataaatatatg
ttttcttttttttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTGGT
CTGAAATAGTAGAAATAATATTGCCTGAATGAGTAATAGTTTCAAAACTG
TTTGTAAAAATGTTGTCAATCAAAGTCTTACTGTGGGGAGTAATTCTTGT
TGGTCTAGTGATAAGTGGCTTGAAGAAATGAGAGAGATTGCTGTgaatga
aattttctgtttcttcGTGAGATTCTAATTTTAGAAGATCAAGATTGAAG
TCACCCATAATGaaagcttgttttttttctcgagaAATTTTTTCGAGTAA
ATTTGAGTAAAGAATATTAAATTCAGAACCAGGTTGCAGGTAGGTGTCTG
GAACAGGACCCACCCAAGTGTAAGTGCAGTTTGTAAACATCAAATATAGA
AGGATAAAACAGTAAAAATAAATGTGTCCATTATGTCCAGACTATCCCAC
CTTAAAATCTTTGAAGAAAATAaccagaaaattgaaaaaaatgaagaaga
aaagtttTAGAGCCAAAAACGAAAGTTTGTTTTTCAGTTTTGTGCATCCG
CTGCTCTTTTCGCCCAGCTAAACCGATTCATGACACGGGGAAATATTTCG
GATTATACATACGCCCTACAAATGGGCGGATTGGGGCGTGCTAGGAAATT
TTACTTTGCTAAGTGCTGTGTGTACACGTGTTCAATGTCCATGCTGTTGA
TTGGTCCaggtttttttcttcagaaCAAAGGCAAAGGGAAATACCGAGAA
GGCATCACAAACAAAATTGTGAAGGTTGTGGTGGAGTATACAACACTGCC
AGCAAAACAACATGGCTGACGAAGAAAGTTCCTTCAACCCAAAGAATCCC
ACAAATTTCAATGTAGACGCTCAGCTTTTGCTAGTACCAGGAATACTTAT
AGTTCTTGGCGTAGGTAAGAAGTTTATTACATTATTAGTTGTTTGGGTGA
AAAGGCTGCCCCTTATTTTGGCTTGATGACTCATTCAGATTTAATATCTA
CTAGCTATCtcataaaagtttttaaaagggATCATATTTATGCCAAAAGC
TGCTAAAACGCTCCAGACCGAGACAgccaaaatttgaatttaaaaattta
tgaatttacattttttttaccaGTGTAAGGCATTCAGGTTTGTGGCATAA
ATTTGGGGACCTTTTTTGGCACTCTATTAtaacaggaccctgccgacgca
ccggacttaacgaacaccggacacgcgaaagtccggtgtaaaatgagaat
tttttttaccaccggacaatttctacaccggacttaaggaagtcggatgt
ccggtgtcggagaaggatattttttcccaccgaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgcaacaccggacttattgc
gtccggtgtagcgaaaggatactttttgccaccggacaaatacaccggac
agtccggtgcgtcggcagggtcctattaTAACCTAACATGATAGGACCCT
CCTGGCGCTCTGGAAACTTCCAGAGTTTTCCggagcagctaaaaaaacac
tttttctctCCGGAAAGTTTCAGAGTGCTTCCGGTGTTTCCAGAGCAAGT
GACTTTTAACACAttctaaaaaaaacgtttaaaaatatttgtctCCAGTT
CTTTGGTCGAAAAcaagaaatattgaaatatcgaaaaaatttaaaaacgt
GAGGTTTCACTAccatgagatttttttttaatatgcaTGTGCGCAGTTAG
TTTTTACATTAATAGCACAGCTAGCGCTATCGTAATTATATCACTGATAT
CTTGCTATCCGGAACACCAGAAATGCACTAGAATGTTCCGGAGTTCCCAG
TGCAGACCAATCCCCGAAAATCGTGCTCCAGAATCTCCCGGTGTTCCGGA
GCATGAAAAAACGGCCCTTTTTGCTCCAGACGTTTCCTAAGCGTCCGGAG
GGTCCTGACATGATCATCACATACTAAAATTGTAGCTCTAAATTGCTTAG
GAGAGCTATGCCTATGAACTGTCCAAAATATAGTGAAGCAGTTCCACTCA
TTGcttctaatttcaacatccttctttaaagataggaataataggaagct
cagaatcactgatggactcctcaactgattgctcagcaaagaaaaatagt
ttcaatcAGTCATTTCGACCTTTCTATTATTCcgatctctaaagaagggt
gaccaaattagaagagggatgtcaacattggACCAACTTACGATAGCCTA
TAAAAACCTGCATCTTTATGATCAGCCGTCATAAAGATAGTCAGTAGCTA
TACTATAGCTAGGCAGTTGGGGTCATTTTGGTTgtatatattttcaatta
aaagtggtcTTTCATTGTTCACAACTTGTCCAAGTTANGTGGGATTTTAT
GAGATTTTTccctgaggcataagcatcctatagagaaggtctggagaaag
tttcagctatatattatttttttcctacaaacagcctgtacttTTGTAAC
ACGGCCACACTANAGAAAAGTTTTTGGCTAAAACTTCTTATACTAGCTAT
GATTTTTAATCGCATCAAAATTGATCTTTTAGCAGCATCAAATGACCAGC
ATTATAACGCGCAACTGCTTCACTTCTATTTTGGGCAtgtagtggggtcg
tttagcataatttacagggaaaaaataatatatagctgaaactttctcca
gaccttccctataggatgcttatgcctcaggaaaaaaatcCCCTAGaatc
atgttttgaaaatttcaaaNTCTCCTGAATTCTTCTTTAAAGTACGTCTA
AGATGATCATGCATAAGGCTCATAGTTTTTTCGTGCCCAATTAATAGCCT
ATTTTGGATATGCTAAGCTACTCGAGAGTGAAAAACTGATGAGTTTTGCT
TTCTTTCTTGCTTTCAGGTTACCTTGTTTATCGATTGCTACAAAGTTATA
AATTGAAAGAGcttgaaaaagaacaaaaacgcaagaagaaagaagaaaag
aaaaaacgcTAGGAGTAGgatgacaattgaataaaacaaatttttcgaaT
TGAATGTTACAATTTGACTGGTGGGGATTTAGTTATTTTtctaattatta
ttattattacaatGATCGTATAAATGTAAATACCTTTTATTATTAATTAT
AACttcttttaatttaatataaaaagcaatttaAGTGTACTAACTTAAAA
TGGTCAGAGCTCTGTTATTTTCGTTGCTAGAAAAAGTACGTAACGCCGTA
GGTTTCTGCTTATCCTCCaacgaaaaaagtttcttgcaTTTATTTGGTTT
TATTCAAAgttaatctttttatttttacttttgacgcagccatccgccaa
attaaatttcctccAAAAAACTTTTCGGTCatcccaaaaatttttttata
ttacaAAAAGTCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011461TCONS_00011461Clytia hemisphaericatranscript
TCONS_00011462TCONS_00011462Clytia hemisphaericatranscript
TCONS_00011463TCONS_00011463Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:559546..567958 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.27	38.54	76.98	80.18	86.96	65.77	132.24	138.6	109.87	81.4	49.47	52.38	34.1	22.5	43.74	30.5	74.99	65.92	26.6	48.69	54.27	56.79	77.33	77.27	33.02	42.99	51.24	31.88	120.76	62.25