XLOC_007470 (gene) - C. hemisphaerica

Overview
NameXLOC_007470
Unique NameXLOC_007470
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000167:91061..98341+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007470 ID=XLOC_007470|Name=XLOC_007470|organism=Clytia hemisphaerica|type=gene|length=7281bp|location=Sequence derived from alignment at sc0000167:91061..98341+ (Clytia hemisphaerica)
GTttcaaacaaaacacaaaatgcCATTTGCGACTGAGTTTAATCAATGAA TACTTATTCACAATTATCAAATTCTTctcttttaattttaatttagatCC TCGTCCAATCAGAATGCTTTATTTATATCACATGATGCGTTTTATGAAGA TTGGTGGAGTGCAATTCTccaatagaaaaatatttttcatcacGAAGTTT TTGGACGCCGTAATTACAAAAGCAATAGCAACATTCCAAGACTTCCATTT TTGGCAATGGATAACTGGTGCTGATTTCATCACTACGTCCACATTTGATT TTATCAAGCAAGATTTTTATTTTGGATGCGATTAGACATTGTCTTTAAAA TATCCATTGGAATTCACTGAAGAGTTTAAATTCAAGCTGTTTTCACGTGT AGAGGACAATGGATTTGATGAAAGACATTCAGCCTATCACGTCACCAGAC CAAATACAACATTCATCTTCTGATGAAGACTCTAACAATTTGCACAATGA GGCTATCAAGAACATGTCAAACAATCCAACAGCTCGTTTTACATTCCCAA AGATTGACGTCTCTAACAAAGCGTCACCAAAAATTGACGAAATTGCCAAG TCGAATCCTTTTGTTGGTAAAAACCAAGAAGATTCTTTTGACCTGTCCGC AAGTCACTCAACTATTAGTGAAACTGAAAGTGTTAGTGGAGCACCATCAC CTGGGCCGCCCTCAGCACCACCCTCCAGCCTTGGGCGGAGCTTGATCACC ATTAAAGAAGCAAGAGACGTGTATGACCTTCAATGTCCGATTTGTAAACT GAATTACAAGAATCCCAAAGTGTTACCATGTCTTCATTCTTTCTGTCATG CTTGCTTGGAAGACACCATCAAGTAagattgattttcttctttttttatt tcgcTACTTCTGACTTAGAGTTCCATAAAGTAAAATTCTTTTGCTACTTG TAAAACATCTACTGCAAAATTTCtgaagcctttggatattcttaactttt ttgagtccttaagatgttcttaatttcaccgttttgtgagaatttttgtg caatttcctaagaaaattgAGTGTTAAGAGTCCATACATaaagccttgaa atattcttaacttaatGTTAAATAATGTGTAAGCTCTCAATCTCTGAAAG ATTCATGGCTACTAAAAGACTGTTTGATGATTTGATTAAGCGCCTCATTG GGCTTATtcagcgtcatcaaaactaTTCTCTATCCCAGGAAATATCTAAA TGTACTTTTCATCTTTTAGTGAAGTGGAGAGAAGTTTCAACTGTCCAGTT TGTCGTCTTGTTATTCCTATCCCTACCAAAGGTGCTGAAGCTTTCCCACT CAATTCATTCGCTACCAACATGCTCAACATATTAGCCGTAGAAAGCCCTC ATAACTGTACCAATTGTGAAGATCGTGAACTAGCCTCAGCTCGCTGTTTA GACTGTGTGGAAAATTTATGTGAGAATTGCGTAACAGCGCACGAACGCAT CCGTCAAACGAAGTCTCATCGGATTGTTAGTTTTGAAGAATTGCAGAACA ATACTGTTGATGAATCTATTAGATGTCcatcgttctgtaaaatacacgat cGGGAAGTAAGTATCTTCTAATTATGCACCGAATGGGACTTTCGAATATG TCActttatacagtggagtctccaaaACTCGAACACGCAACGGGAACGTA AatctgttcgagttaaggaaatttcgagttatagagtaggGTTTAtcagg cattgttaactgaaggcaCAAGAAAAacctgttcgagttaaggagacatt cgagtagtagaggttcgagtttTGGAGACCgtagttaaaaaattgaaact caCCATTTTCGCGCCCATACTTCTCAAGTTTCATAATTTCTCTCTAAACC CTACTAAATTTTTTGGAATCAACTTTCGcagttatatattttttctgaaa aatcttttctttggttttcatttcattattatCTTTATCTTCTTCCATCT GACCTATGAAAGAATGAATTTCACACTTATGTTTGAAAACGTCTGTTCGA TGTTGTGCCTGCCTACTTAACAgtgttctttcttttttataagaaccaat atTAATTTAGTTAGGGCTCAGCTGATCTTGGCTTTAGGAACATTGAGCCT CAAATTGGttttatcctgttcttatttttataagaaaaattatcccaacc aaaataagaacaatatcAAAGCTCtcataaaaaatgaatataGAGCCTGA ACAATTACAGTATCTACAGGCTGAATTAATTTTTGAGCTGCattttaaaa aacatgtaactttTTTCCTTTGTTTATCTATAGattctgaagtatttttg tgaaagttgtgaTTCAGCTATCTGTAGAGATTGCGCCATCTTTGAACATC GCGAACACAATTATTTGGACCTCAAGGAAGCAGTTAAAAGTCATGGTAAA CAATTACTCCAGTTGCTTGGCAACACCAAACAAAAAGTGCCCATCTTGAA GAATGCTTTGGATTCGATTTTACAAGTGGAAAACAATCTTCAACAAAGGT AAAATTACGATagtaaatacacgtttttttataagaataaccaaagattt tgaagccttcaaatgttcttaactttttgagttttaagcctaaaaatgtt tgtaAGATTGTGCACCATCATAACCTGGGAGATACATAGGAAATGTGTCG GGTGTGTGCAAGCCATATAAGGGTTCCTTTTTTTCTCCCCCCAAAGTGAA AGACGGGTATAAAAAACAGCAATATTGTATCTGTCTCTGACAGGGTTCTG ACATTACGAAATATCAAAAGTCGACTCTTTTACATGGTTCCATACTCTCA taattttgaataaagttttaaaattcgaaAGATTTTGGATGAATTTTGGA GAAAGTGGGCTCCCACataaaagtctctcaaagggtcgatttaaCTTGTT AGCAGGTATTTCAAATAATTCAATTGCAGAATGCGAGGTTTTCAGGTCTT ACTACAGCCAAAAAGGAAAACGGTTTAACTTTAACtccaaaacctttttt tattcaaaggaaggagaagattgaagaatcaatcaaccaatcagtcGACT CACATATTCAACTTTtagaagaaaaacgaaaatatCTTTTACAACAAGCA CAAGATATGACGTCTGCAAAAGACAATGTAAGATGATTTTGCAAAtgttg cacgtttttttattactaAATCTAACTGTGCTTTACTCTACTAAAAGGGT AAAAAGATAATCTCGATCATGTAAGTGCGAAAACTCCGGTGACGGCTTTG GAAAACTTGCAATATacacaccctcttctcacagacttggtaggattttt cagccaccaggggtaaaaataacagaccaaaactcgatggggatttgGGA TAgcaaaatagcacaatatttcacagtaaggatttgcttatctggttATT TTAAGTGGGGGCAAAAATTAGAGTTTCCAGTGGAGagaggtcccagtggg tctgtgagaaggggtggtCAATATTAGTACCTTAAAAGAGAAAATACAAT TTAGAGCTTTAGAAACTAAAATCTTTCGAGTAAAAGCAAAATTATagcta gaaaaaaaatcaataacttCTAACATAACTTCTAAATGTTTTCTGTTTTG TTATCTACCTTAGGTTCTTCAAGAGCAGTTCAAACGTTTGCACTTTGATC TTGATAACGTGGTTAGCAGCTGTGAATTCGTCGATAATATCGTTTTGTAT GGTAACGAGGCTGAATTTATGGATGTTAAATATTTCATGTTGTCAAGGTG ATTGTTTCTACATAGATAACCCCTTAGCACAAGTGCTGGGACGCCCTTCC TTCTAAAAAGAATAACCGTCTCCAGTgtgaaaaataccctgaaatccCAA ATCCATTGCCAAATGTGTTGTAATctcgaaaatttattttctgaaaTGTA AATAATAGATTAAAAAAATCCCCATCCATTTTAACAGCTGATTTTCAACC CCCATTGAAACTAAGTATTTTATTCCCACTATGGCTATAAAATCTATACC GtctcactgagacaggggtgtttcagCTATTGAGACTATACGCTTCACGA CGGAACAGATTTCTCCTTGGTTTAAGAGAACCCTTGTATTTTACAGATTT CTCCTTGGTTTAAGAGAGCACTTGTATTTTATCACAAAGTCTCATTGACC ccctgatttttcttaaaaaataccccaaaatcgTATCTTATCTTTCCGGA ACAGCCCGTAGTCGCGACTTCAAATTTGACAAACCATTTAATCATGATAA CTGAAGTCAGATTTTTCCAGACAGGGGGGTGGGTGATGCGGGGAAGGAAT TGGCTATAATAGGTGGACGAGTCTTGGCCAAATCTATCATCAGTCAAAAA TATTGATCACATGCTTAGAATCTGGAATTTCTGTACTTCCCCTATCTAAT TGCTTATCCCGTTAAAaatatttagttttttctttgaAGGTTACATGCAC TAAGTGAACACAAAATACAACTTGTTCCAGAAGAGAatgatgttttttgt tttagCCAGAACAATCAGAATCTCATGGTAAGTAAGAATGTCTGGGACTC GAAGGGTCCTCCTTTGATACCCGATAGTAGGGGGGggaccactctttctc cctggatccGTTTCTTTAATTGCTAAGGATCAAGCAGAAAGGCATTAAGT ACTATTTTGTACCAACTACCAAATTTTTTCTCGAGAACTAACTAATTTCC GCGAAAACGAGCAAAACTCGCGAAAAAAGTTACTCAACAAGAATTTTAAT AAACTaaacttttttattgaaatatgtTATAGGAAGAAATAAATTGATGA AAGTTTGAACGTCAACTTTTGGGTAAGGCTCATTttataatcatttctaa ttttaacgTCTGTTTTTCTACATTTCATTCATTTCTAGACTGGCACACGA GATTTTGGTATTTTAACAACAAGTCAAGCTTTTGCACCTTTCTGTTTTGC ATCGGAACGTAATGAAACACTAATCAAGACTGGATACTTGTCATCCTTTC AAGTAGTTTTGAATAATCGGAATTCAGAAAGGATCACTCACGGtaacatt aaattcaaaatgcggGGAATTTTTTTTAGTAGAGATTCTAAGTTTAATCG GTACTCTGAATTATTCCTTGGTTTAAcaatttttcaccaatttggTAATG GGATTATCTAAAAAGCCTCTCATGCTTCCGCTTTCAAGCTGGTCTTTGTA ATACACGTTATGGAACCTAATGCCATAATGCCTCGTGCCAGATGATGACA AAATGTCTCGGGACAAACTATTGGTCACTGCAATCCCTACAAACTCTACA AATATCCCATATTTACAAATCTTTGGTCTCACAAATTTGAAGAACTTGCA GCGTTTAAAGGAGATTCAATACgtatctgtttttatttttggtttATACA ACTTTAAAacgaatttttgtcaaaaatgtcTATAAAGCAACAATGACCAT CGAGCTTTAGttaaattgattttgctttATATAAATGATTTATAGGAGGT GACGATGTTTCAGCGGCCATGGTAAATACAGAAGGAGAGCGAATTCCTGT TGACGTCATTGATAACCAAAATGGTAGCTATACAATCAAATACAAAGTCA ACGCCAAAACAGATCATTTCCTTCAAGTCACATTACGCGGACGACCTATA CATGGTTCTCCTTTCACCATAAGCGTTTCAACCGGTATTGATTCGCTTAG GATTGGTCCTGTTCTGACGTGGTTTGGATCTAACGGTGTTGAATCGAATG GGAAAATCAATGAAGCGTATGAACCGTGGGGTATTTGTTGTAATAGTCGT GATCACGTGATTGTAACTGACCATAACAATCATAAGATACAGGTAGGGTA AAGTCTTTCACTTTTACATAAGATTACATAACCTTTACACGACGTACAGT GGACTCTCGCTCCCTAATTCGAGCTTCTATTATTTTAATATCTTTATATA ATTCGAACAAACTCTCAGGTCCCAGGAAGATCTTGTTTCTACCATTTACT tttgatttagatttttgatCAGAATGGAAAATTATTACGTCAGTTTGGAT CACGTGGTAAAAATGACGGAGAAATTTGGTATCCGACGGGAATCTGCGTC GATAAAAATGACGATATTTTTGTGGCTGATCATGGAAACCATCGGATACA GGTCAGTGTGTAAATTTTAATATTAATTCATTTATTAGCGATTTTTCACT ATTCCATGTATTTGCTAACTAAACGCTCGTGGATAATACCCTCAAGAGAG ACACACCTTTTTGCAtatcattttttttgcaaatcttCTTCATTCTTCGT TTAAGCACTTTGGAGCATAAAAGCTGGCGGTGGTGGACACTACTTAACGC TACCATTAAGTAAAAGTAACCCTTGTAAAATACCTCATTTCGctactatt tttattttattgtagGTATTTACACCAGAAGGCAGATTCGTTCGAAAGAT AGGAGGTAGAGGAAACATGGATGGTCTGTTCAAAGGTCCTTGTGATATCG CTATCGATCTACAAAATCGTTTAATAGTAGCTGACAGAGATAACCATCGC CTTCAAGTTCTCACTGTtgacggaaaatttttgtttaataTTGGTTCCTA TGGTAACTCAGAGGGAAAATTTGATTCCCCACGTCACTTGACTATTACCA ATGGCAACCATATTATTGTGTCGGATTCTAATAATGGTCgcgttcaaaga ttcgatgaGAATGGACAGCATCTTGGTATCCTTGGTAAGAAAGGATCCAA TGCTGGTCAATTTCAATGCCCAGCAGGCCTTTGCACCGATACTGAGGATA ATCTCGTGGTAGCTGATTTCAAGAATCTTGATGTTCagctttttgataaa atggGTGTTTTTGTGAAGAAGATCGGTGAAGGAGTGTTTAGCAAACCCAC AAGTCTTTGCGTTACAACCTCTGGTAATATATTTGTAGCTGATCgtggaa atcataaaatatatcttttttaactgtaaattccTTATCGTTACCATTTT CAACTACAGTAACGAACGTTGGTTGGTGGGTGGTATTATTGGCATTTTTA TAATTTGGCACTCAGGCTCTCTTCCCAgcttgcacacaacgttgtttcaa tgtttatctaacgttatatgaacattagattaacgttgaaaagacgttgt gtgccagctgggctagCTAAACTCATTACTCCAGTTCGTATTCAACGTAG GGGGGGCAATTGTCCCAGGGGTAATTGTCTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00013360TCONS_00013360Clytia hemisphaericatranscript
TCONS_00013361TCONS_00013361Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00013360-proteinTCONS_00013360-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:91061..98341 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
TRIM2PREDICTED: tripartite motif-containing protein 2 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.7 0.65 0.46 0.63 0.29 0.29 3.5 3.71 0.88 0.82 4.09 3.52 8.65 6.33 5.7 16.91 5.61 5.84 0.43 0.28 3.22 3.48 2.38 3.51 5.23 6.3 1.55 1.02 0.12 0.09