XLOC_010078 (gene) - C. hemisphaerica

Overview
NameXLOC_010078
Unique NameXLOC_010078
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000282:98554..105809+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010078 ID=XLOC_010078|Name=XLOC_010078|organism=Clytia hemisphaerica|type=gene|length=7256bp|location=Sequence derived from alignment at sc0000282:98554..105809+ (Clytia hemisphaerica)
TCTAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACAC
AAGCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTA
ACGCAAGTGGGAAAAGTGTTTATATGAAACAGGTCAGTTGGAAAATTGAT
TGTGGTTTTTTATGTTACATTGTCGGGGAAAGTAATGTCGGAGGAAAATG
ACGAAagttttgagggggtgacgaaatctttcgacattttatcacccgtT
TTGCATGGTTTTTCATGTGATATTTTAACCTACTCTCTTATTAATGGCTG
AAATGTCGTAATTTAGtaaaacatgaaaataacaacctcatcggcccttt
ttacgccggccccttttacgccgacccttattacgccacagcctaatttt
gggcttacgccaattagggccgttaataacgccaaaatttgtaaaaatgg
ctacatatgcttcaaattagtaacTAGTGActgaaaatttacattaaaat
gtcattttttagtagtaaactgttgaaaattccatcgaaaatcactgatt
ttcaaatatattaaatatttcactgaagttttaaatattgagtaaaacaa
tggataattttcgtcttcgaatcatacccaaaatcctttaaattgagaaa
taattaacgccgcttttaggttaaaattgcaaaattttggccttttcaac
gctggcccttattacgccaagagcccaaaaaaaaaacgccaataagggcc
ggtgtaaaaaggtcCGATAAGGTATATTAAGGTTTTTGTTTACAGTAGCC
CGCCCGCCTCAGAGaaatattaaaacaaatttttttgccactGTCATGTA
ACTACAATGAaaagtttcaagaattttctgcaACTGTTTCTGactagcaa
ctttttcatcaaattgacactttttgtgtgcttcatttttcaaatgtttt
cggCCCCAGACTATTAGCTTTCCGATTGTCGCTGGATTTAATTGTGGGTG
ATATGGAATGGGAAGGTCCAAGAGTTTCTAGCACAAGaaaacatacacgt
tttttttaagaaactagttttaccaagcagcctcaatgtttcttaagaaa
tcggcctttggagccttaaatgtttcttacatgtttctaaactttttgac
ataatcagcctgcatgcaaagaaaaaaaaacatttgttttgattggaagg
ttcttaaaaaaaccgaattaaaaaatgttattttctcattctcagcctca
gcatgtttcttagatgtttcttagtttttaggtattctgagcctcatgtt
tcttaaaagtgtgtttcttaaaaaaataaatgtatgATCACTTTAACCGC
TTAACTTATACTCGCGAAATTATGCAAATGATTAGGTGACCGTCATCAAT
TTCTTTAACTTTCAGGTTGGATTGATCGTCTACATGGCGCACATTGGGAG
TTTTGTTCCGGCAgtgtcagcaaaaatcagtatCAAGAGTGGTATTTATA
CGAGANTCGATGAGTTCGGTAAAGGTACTTCTGCGGTATGTTTTCCTTTg
tctttttctgaccaatcaaATTCTTTCTAATTCATTGTAATAAAATAGAC
AATTAAAGTTATGATTCAAAAAACATCTCGACGACTTCTATACgcactga
tgatgttttttattaaaacgaAAAGCTTATGCTAAAAAATATTTGTCGAA
ATGGGCAATATTCATGATTGATATCTGTGGTCGCATGCCCAAACCTTCCG
CTAGTGTAGTAGTTGGTGGATTCCAAAACACTATCAATGTGGAGATGGAT
TTCTCCCAATTCACCGTCTGTGACCAGTCAGTAGACAATAATTCACTTCC
AGCTCTACCGAGTTGCATTTGAGTCCTCGGGTTCCACATGGACCCGTACc
tcaatggtagagcaaatgGCCGCGAATGacatggttgtgagttcgagttt
cgtcggatccgttggttttccaacggttctagtggctggtcagaaaacaa
tatgagagcgactgtattcacttcatttgtcgaaaaatgtttttttgaat
cATATCtttctaatttaataattctagtattaaaaaataaattgctggtt
caacaggggggggggtcaagtaTTTAGTACATTTATGTACATCTAGTACa
tgaccgtagtacagtggtagagcatccggctacggttcgcaaggttgtgg
gttcaacccacagccgggtcataccaaagattcccaaaaatggtacttga
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAgtgtcagcaaaaatca
gtatCAAGAGTGGTATTTATACAAGGATTCACACACGAGAAACTGTCTCT
GTACCTTTGTCCACCTTCATGATTGATTTGAATCAGGTAAGTGCGGCCAG
AAAAAAGCGagtatgtatttgcacttttgaggacagtTGGAgggactgaa
gcgatttggaataacccgcagttttgacccgcgaGTTCGAGCGCGttaaa
aatgctgatttaccgttgtcctcagctggtcaggatctagtcaagaTAGA
ACCTTACCGTCCCTTCGCAGAAAAACGCACATACGGTAAAGTGTGCGGGA
AGGGTGGTAGTTTTTTGGTAAGTGTGGCCAGAGAAAGCGTGCGGGAAGTG
GTGGTAGTTTTGTCTGACCAGGATAAGGCATAGGGCCTGAACAGTCGCAC
ATCAGACATTGTCCGACcagaaaattataattttcaattttttaatacaa
aattaAGCATTGGAAACCAACGTTATGTCCGTGTAGAATATGTAAAGTGT
ATATCGATGGTGTTGGCTTTATTTAAGAACTATGTAAATAGGTTGACTTG
TATTAGCCTAGTAGCTATTTGTTTTTATGTCAACGATAAATAACAATTAC
AGACAAACCAACAGCACTACCCCCGCCTCAAAGATGTGTACTCTTAAACG
GGGGTGGGGGGTTCGANagctatcgaaagaggagccttcgggtcgcttcc
gactgcggtcgcagacttactacttactacATGAACCCAGGACACtttca
acagggggggggggtcaagcagaaCCAATGATTCTTTCTACGGTGATGAT
CTATCTTCATGACCCAGTGTACTAACTACCAAAAATCGAGCTTTTTTGGC
AAAAGAAATGGGGGTGgtgtaaattgaaatttgacCTAAAAATCAGTTAA
TACATTGTGTACTAAGTGAAAAGGCGTGGTGGTCcttttcaaaattatca
aaaatcagTCAGTACTCATAGTTTTCCAGagtaactgcttgacccccctg
GTCTCAATGTTATTGATATTTGGATTCTGGAAGCAACAAGGTTAAGATTT
ACTACCTGCTACCAAGAAAAGGTTTCCTCAGCTTTAGGAAAACCTTGTTT
CttcttgtttaaatttttttttggacgtTTTGAAGCCTTCCACCCTTTAA
TTTATCAATCTTAAccctcaaactttctttctatagactGATGGGTTAGC
TCTCTTAGCTTCAGTTTTACAATTTTGGTCTGATGAAAACAATCAAAGGC
CCATGGTCCTGGTTTCCactcattttcatcaaatacGGAAAACGGTTTCT
CCATCAAGCTATGTTAAATACCAGGTAAATATACAAAGCTTAATCTATTT
TCTTATTGGTTACTCCTCTCGCCTTAGGCTCGTTTTCGATTCCTTTGACT
ATTTTTGTTTACCAGCCGGTACACCCAACCTATTTTTGTTGCCATTTTCT
AGCTTTGTTCCTCATCTGGGGTACCTATTTCCACTACAATCGGAGCAACT
ATTACTTCCTAGAGCCTGTCCTAGCTTTtgttccaacctactttagagtc
GGTATAATGATTGTTTTATAcacaaaaaaagacatttttatctttgtaca
tatttttaaaacgAAAAGTTGTTGTTATTATATTTTTAGCTTTATATATA
CCAATAATGTtaatggtgataaaagagaagtaaaaaaaaaaaaaagctct
TTTATAatcgggtagctcagtcggtagagcattcgccttacaatccaagg
gttgtgggttcgatccctggtcatcgccaactcagcggatgagtagctta
tattgggtaatctgatctacgTGGTAAGaataggtgtggcgctccatcTC
GGCGCTCGATCTCCTAGGTCCAGCACAAATAGCAAAAAGGATAGGCTCTC
TCAACCCCGGCTCTGTCGACAATCACCAATTTAATATACTTGTGATATAC
TTCCTGATAAACCCTGCAGACTTCTATGCAAATATGTTTGTTTTTTGGAA
GCTGCGCTATTTATACTTTGCCTGGCAATATATCACCTTAAAATATATGC
CAATTCCTTTAGCCAAGTAGCAAAGCCCTAGGATATCCTTTCTTGATTAG
TTCTTCCGCACCGATTTTATTTTACCTTGAATATCCACTGCTTTGACAGA
CAATAGATGTCATGCTTTTTTACCTCGATTATCTACTTTGCTTTGACAGA
TACTAGATGTCATGTTTTTTTACCTCGATTATCTACTTTGCTTTGACAGA
cactagatgtcgtgctttttTACCTTGAATATCCACTTTGCTTTGACAGA
CACTAGATGTCATGTTTTTTTACCTTGGTTATCCACTTTGCTTTGACAGA
CACTAGATGTCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCT
TTGAAAGAAGGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTC
CGTTGGAATACAGGCTGATATCGTACAACGAGCTAAAGAGGTAAACACAT
TTTAAATAGTGAGGCTAGTCAGTCCGCTCACTTCGCTCAGTTGGTCAGGA
TACGTAATACGTTGagggaattaattttagtgGAAACTATTTTTGGCGGT
CTAAAAAAATGTggaaattgcatttcgcgggatttaaattttcgcggttt
tgctcTTTTGGACACATTCctaattttttgatgaaaattggcaaaatttg
tAATTTGCCGTTTCCAATTTTCGCAGATATGCCAATAAACTgcgaaaaaa
acgaaaattagtTCTGATATTGTACAGCGGGAAACGGGGTAAAGTTTTAA
CGGATCAATCACCTCCAAAATTATTATATCTAGGTTTTAGCATAGGAAGT
TTCGAAAAATCCCTCGGAAACTAGCGAAACTTCAGATTACTGATTTTATT
TATAAAGAAAGAACACTGACCCACCAGACAAATTCTCTCATTTCAGATTA
CAGATTGTATACTGAAAGAACACTGACCCACCTGACAAATTCTCTCATTT
CAGATTACAGATTGTATACTGAAAGAACACTGACCCATTGGACAAATTCT
CTCATTTCAGATTACAGATTGTATACTGAAAGAACACTGACCCATTGGAC
AAATTCTCTCATTTCAGATTACAGATTGTATACTGAAAGAACACTGACCC
ATTGGACAAATTCTCTCATTTCAGATTACAGATTGTATACTGAAAGAACA
CTGACCCACCGGACAAATTCTCTCATTTCAGATTACAGATTGTATCCTGA
AAGAACAGCCGATCGCGAAGAAAAACCACCCTTACAAACAGAGAGAAGAA
GAAGAGTGAGTAAAGCTTACGTCAAATTTTTCTTCGTGAACGACTTCGAC
ATTTTTGCGAACAACCTCTTTGAAGcagaacagaaaaatatttttcccga
AGAAACTTCGACACTTTGCTTAAAAATTCGCTACTTTTCCCCTGTTAAGG
TTTCCTAACTCTATACAATAAGATTATACGGGCAATCTAAAATTTCCATG
CTAACTAAAGTTGTAACGAGCGTCTCAGAATAACTCTATTTGAACAACTA
GACGATTTTCACAAATCAAAAAATACCCTTCCTCGGAATTTTTATTCCGT
TAGTGGTCGAAACCCATTTTAGTTGCCGTAACCCCACCTTTTGCGTGCTG
AAACTTATCGTTAGCTCTCCAAACTGCATCTTCAACAGTCGAAGCCCAAC
TTTTTCGGcccaaatctgtccaaaaacgccaaccgcccataaattttgct
ccacccatccgcccattgaagaaactttttgacttttttttacttttatt
tgactttttgacatttttctaagaatttttgactttttttttgagttttt
gactttatttttgacttttttgactttttttttgactttttgtagaggtg
tacgataatttttcgagtgatttacccctcgaaattttcaaacacattat
gcttttctttttcagactGATCAAAATTGCGGACGAATTTCTGACCATGG
ATTTGTCGGACGAAAATGTCATCGGGTTATTCATACGCCGTCTTTGTGAA
GAAATCAACGAAGCGAGCGCCACGGAAGTAGAAGAGTAACATATATTCCA
ACgaacaaaacaaatcaaaggGATTGGTAtgaaagatttcattttcattt
gtgaATGGCTGGGAACATTTGTTACGTTCAGTGCCACCATGAtgcaaatt
tttaatttttcaaacaaaacattttttgaaaagaaggcAGACAGAAGGGA
AAATTCATCTAGAAAATTTCTCCAAGATTGTTTTAAAATGGCATGAATGT
TAAAATGTGGGCTAAGAAGTTATTATTTCAGTCAAAAGAGTTTCTTGATG
ATTTCCCGGATTTCCCGGATTTAAAGAACGTTATTCTACAAAGTGAAGGA
CGACGGAAACGAATGTTGATGTCGTTTGTCAATGTTCATTCgaatttaaa
gggacataacagtacttgagAAATTTGTAAACGGAGCGGATACAACATcg
aaacaaatgtcacatgtcaaaatagaaaatcaaaccaaactttgattgtt
caattgttttacaagtttgttttggacacgtgattttgattgttctcttt
aatgaaacgtggttcgcgcaatgtttacattttactactttaatgtccct
ttaata
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017969TCONS_00017969Clytia hemisphaericatranscript
TCONS_00017970TCONS_00017970Clytia hemisphaericatranscript
TCONS_00017971TCONS_00017971Clytia hemisphaericatranscript
TCONS_00017972TCONS_00017972Clytia hemisphaericatranscript
TCONS_00017973TCONS_00017973Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017969-proteinTCONS_00017969-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:98554..105809 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28	5.11	6.93	5.1	0.46	0.38	0.89	0.71	1.21	2.48	1.85	1	1.76	1.18	1.12	0.94	0.89	1.08	0.65	0.47	1.41	1.92	1.82	1.97	18.97	22.55	1.02	0.83	2.68	2.49