XLOC_010794 (gene) - C. hemisphaerica

Overview
NameXLOC_010794
Unique NameXLOC_010794
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000321:334401..341389+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010794 ID=XLOC_010794|Name=XLOC_010794|organism=Clytia hemisphaerica|type=gene|length=6989bp|location=Sequence derived from alignment at sc0000321:334401..341389+ (Clytia hemisphaerica)
GAGATTTTTGCCTTTTTCGCGCACCATTCATAAATTTATTTATAGCGCTA
CTATGACGACATGAATAGTCATTCATGGCAACAGCGTAAACGatattgaa
atcaaattttcaagatggcggactcGTAAACATGTATTTGCCATTTTCTT
CAACCCTTTCTCGACTGGTTTAATTCTCCTTACACTTCAACATCAATAAA
ATGGGGACTGGAAAGAACAAGAAACTGTTATGTGTTTGTGAAATTTGTAC
TTGTGGGTAAGTTACTTAATTTTGAAGAGATGAATACAATAAATTTCATA
GCTGTGCTGGATAAAAGCCAAAGTAGATTTTCAAATCTCAATcttgtcag
ttacatcaatatgccttcttacctgtctttaaaaatataaataaaagtaa
tcacggaaaaggacgcgaaaaaaaaagacataagtgtgagaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntgaaagtttgtctcggcctttttataatgagcgagacatacgttctctg
attacgcaattttcatattgacattttcgaggcattttgatgtaactgct
tgTAGTGTATTCAATCATCAACTGCTCATTTGAATTTCcattcttttatt
tcaaaatgacaCTTCTAAATTAAGATTAAGAGCAGGAGAATTGTACACTT
TAAAAAAGACATGCAATTTGTGGACATTCCCGGCCCGTACCGTGGTGAGA
TTGGTTAAACTTGCATCAGTAATGGTAGAGTAGAACTGCGAGGGGAGCTG
CgtagttcttttgttttgaaattttgctgctttgatttgGTGTCAGTCAT
TTGGTGgctaggcggtcatcgaaaaattgttctgttcgcgttgcaacagg
tgttaaaaatgcatgcgggcggacgggtGGTTGGAAAAATTCCCGGGTTT
TTGAAAATCGCTTCTGTAAGTCAAGGGCAGTTGGTGACACAAACAGAACA
ATTTTCTGATGGCCGCCAGAGCGTTCCAAAAAAAAGCTATACGCATAAAG
AACAATTTGCTTTTTCCGGAATTTTTCCTGCATCTCCACACCAGAAAATC
AGGGGGAAATATGATGCCGGCGAGTGAcccgaatagaacaattttatgat
GGCCGCCCTATGCGAGTTTCTCTCCACTGATGCTActgtagcctgggaat
ccaagcgttaaacttttttcacagtctagtttatgatatttttgctgctg
gtttaacgcttggtgcaggtaactcgcctgcagggaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNctaatctacctgcaccaagctcta
taattttagaactttgtgaggtgaggtattttttgttttttctaagatta
tgagcttggattcccaggctacactgatgcaagttacccaacttcgcGGT
ACTTGGGAAAAATAAAAAGGGGTATACGGGGATTTGCAGCTGGTCAGGGT
ACTTTTTTCACCTTTATGAATCCCAGGATAGGTggcaaaaacacaaaatt
ttagtcccattcaagggtcactttaaaaaaaaaaggagtCCCACAAACTG
ACGAAGGGTCTATTTTTTTGAAAGGTGTTgaaattagaccaacttattTA
TACTGCCTGTCGtgaaaaacaaagagaaatcaATTAGATGATGTTagatc
attttattttaaaaaggtttatgcTGAAGTAATTGTTATTCAATAGATCA
TCGCATTCTCATAAACAAACTATAGTCTGATTCTGTAACGTCAATTTCAC
ACACAATCAGCCATTTACCTACGAAATGGTGGAAAGAATATGGAAACAGG
ATGATTTAGTAACACCTTGATAGCTCAAAGTCTCTAAGtatttatctatc
tatctatatatttaagtaacATTAGGCCCGAAGTCCCATTTTCGCTATAT
ACATAAAATACGAGATtgtttaataaaataattttattcataAATATCAA
TAAGTATTAAAATcaataataataacatataTGTATAAACTGAATTGGTT
TATACATTCTAATGAATTTCCCGAGAAAACGTGTCAAACATATACATATA
CATATTTCCTTGTAAAATcggaaaattgaattaaaagttttaaCCTTTTT
TGTCGTGACCTTGACAGGATACTGTAAAGAGAAAAGAAGTTTTTCAATGG
AAAGGCCAGAAGAGTGACTGGGGAATGAATCTTGACTTTTGTTGTATGAT
TGATTTGTAAAAGTTCATTTAGATTCATTTTAGATAATTTTAAGTCAAAT
CACGAGGCTGACTTCCATTTATGTAGTTCTTATTAAAAACTCTGTACCAT
TACTCCCTGCACTAGCTAGTTAAAGTAAGAAAGGTCCTTTATGTTAACTT
ATCTACCTACAAAAGGTAAAAGCTCCTATACCACAACCCCTTGTAGCTAT
CACTAttagtcaaaatattttaaaagtaaaaagtttGTGATAATCTGTAC
AGTGAGTATGAACATGATTCAAATTATATCAATGACCCATGAAGTCTATA
GCTGTAAACAACTACTCAAttatttatcattcaaaaaataagtttatCAA
ATATTCCAAAACAATTTATAAATAATTTAGATTTCTATTCACAgttcatt
tttatgattttaccTCCTTCAATTTCCATGTAGATTTTAAGTAGTCATGG
TGGTTCCATAGTTTCATAGTGATTTACTTTCTTCTTctaatttcaataat
ttcaaaaagtttatttaGAATGATGTGTTCTTAAAAAGCTTTTGgtgaat
tttgattgtttttttaatgGCTCCTTTTGTAAATCAGCATTACGGACGAG
AATATAATATTTTGAATTGGAGGTATTTAATTTCAATAAGTTTGTACATT
CAAAGTGATGAAGTGTTCTCTTAAGACTGACAACAATGTGTCCGAAAATA
AGTGGACAAATGTTTatgtaaagtaaaatcctcataatCACTAGCGATAG
TCATGAGTTAAAAATCTACCAGTTGACACACAAGTGATTCACACTTTTGT
AAATCAAGTCGAAATTCACTTTTTGCTTTATGTAAAAttccgagaaaaaa
aatcaaaagcttGTTACCTATGAAgcaagttgaaaaatattacaaaccaa
atttaattttacctTTCTTGTTTCCATTTAATTAAGCGCTGAACCTTAAA
GCAGAGTTATGTGAAGTACAAAGTTTTTTACAAGACCTAGCCAGAGATTG
AAAATACCACCTGAGTACCCTAGTACTATTTACTCACCagttagaaattt
aaaatttaatttgatttctttttagtCGCCATCACTGTGTCCACCGTCCG
AAAACAAACAAACCAAGCGGCCCATGTGCTTTATCCGAATACAAAGAAAC
ATATCGCAAATTTGACAACTATGCACCACAAAAACCCATCAAACCAGATT
CTGCTACCAAAAGGAGTGATGTCCCACTCGATGCTAGAACATTATACGAA
TTAGAGTATACAAAACATCCATTAGAAGCACGTAAGAAACGAGAACAGGC
TAAATATGTCAAGCCTGGAGGAAATTTTGATGGCACCTCAAGCTACCAAC
ATGATTATACTGAGAAATCtgctgaaaaaatgaaatcagctCGACCACCT
TACCAACCAGCTACATCAGACCGTCCTTTCAGTGGAACGACCGTTCATCA
AGAAACATACAAACCGTGGGAAGTTCCATTTACCCAGGGTATTCGTCATC
AATCAGCTATCAAATTACCATCAGGAAAATTTGACCATAAAACCACTTTC
CAAAAAGATTTTACTGGATATCCAGGACACGCTGGTCGACAACCCATCAT
ACCAAAAGGCCCAACTCTTTCGATGGGTGCTGGTAAATTCTCAGATGAAA
CCACCACCCGTCGTGATTACACACCCAAGGATGCCCGCCCTGAGAAATCA
GCCAGACCACCCCAATATGTGCTTCACAATACAGACCCATTTGATCATAA
AACCACATTCCAACATAACTTTCCATGGCCTAAGGGACATCCAGCTGAAA
GTTGTAAACCACAACAGATGGTAAGACGCTCCAGTATGCCATTAGATGGG
CTAACAACTCATAACATGACCTATAAGCCTTGGGAAGTTGCTAAGACAAA
AGGCTGGAAACCTAAATCTGGTTGGGTACCACCCCAAGATCCATTCGATG
CTAAGACCACCTTCCAACATGATTATGATGGCAAATCGTCATCACCAGCT
CGAAGCATGCGTCCTTACTATAACCGAATGGAGCCAGGAGAATTTGCAGA
TCGAACAACGCATAAAGATGCGTTTAAACCATGGGAAGTGAATGCACGTC
AAAGCTGCAAACCAAAGGAAGCATACAGCCCGCATGGTAAGTTTGATGGG
TCTACCACTTTCCAAACCGATTTCAAAGGACGACAAGGTGATCGTCGCGA
TCTATGTATCCCTAAAGGTAGTGGATTGGCTTTCCAAGGTCCCCAAGATT
TCTCTACCATGTATGGTAATACCTTCTTGGGTGAGAGACCGCCTTCATGC
CCAGCCAAATATTTGGAGACGCGTAGAAATACGGCTTCACGTAATGGTTA
TGTTTTCAAACAGGATAATAATGGACATCAGTTCTTTAAGCCTCCATACG
TTCGTGAATCGGTGGAACATATACCAACCTCACCTTCACAAGATCTAAGG
CTTACTAAGTCCTTAGAGGTTTTATCAATGTGAGAAAGGTGTTATTGTTT
GGGAGATGTGGACTGTTAAATTGGTAGGGACAAGATCCCTTGTGGAACTC
CCTTTAATGGAGATTCTAAAACTCAGATGCCAGCATTTGGATTACCATAA
TAAAAAGGATATTGATTTTAATGATACTGATATAATGGAGAACTTTTGGG
AGCTAATTATGAATGGACAGTCTTGTTTGACTGGCGAAagcaaatttttt
aatttgacaaaatttttcatttagaattttttatgaCAATTGATTATGAT
TAATCTCtagtcattttttattttattgaattttttttgtcaacacTGTA
CATAAAGAATTTTTAAtccattttatcaaaataagaatcttttcaaactt
taaaagggTGTTGAGTATTTTTAAGGAGAGATTGATTGTATCGGTGGTTG
TACAGGGTGTTCTTAAATTTGATCGATTTTCGGAATAAATGTTTTCAACT
NTGTACAGGGTGTTCTTAAATTTGATCGATTTTCGGAATAAATGTTTTCA
ACTACGACAGTAGCTTATTGATTAATCCCGAATAAGAAGTGTCTGTTGAT
TGTTATTGGAGTATGAGTCAATTCATAATTTCAATACAAACTTTTTTAAC
AGTATCCTTGGAAGCACTTTTAAGACAATATACGGAAATTtagataatat
tttttaatattttgacacAAATTATATATCCTATATTTTAGTTTTGTCCA
CTTTAATTTGACTCGTGCTTTCCTATAATTTTAGAGATGTTTAATTACTC
TGAAAATTATATTataatgaattttttaaataggAAATTTTAGCACACGG
TACTTGATACATCATTGTGCATTTTGCCAACAAACGTACGAactattttg
aatttcaaattatGTTTTTACCGTATATGATATGCACTTTTGCAAGATAA
TTTCTATACATGTTTCACTTTTAAATGCACCGTTTATAATTCTTTTGTGT
GTCCAATCATAAAAAATACCTCTttgaattgagatttttttgtaaaattc
aatTTATTCTAATTAATCTTACAATTTTTCTGGAAAGGACTTCTGTAGTC
CCCAAAAATTGTCGGTAAAATATGAAACATTTGCTGTGTAAATTCCATTT
TCCGAGTTCtgtatttaaaattttaattcagAGAGTTCAACTTTACATCT
AGGGACACAAGAATTAAAATTGTATATTATATTTGACACATAATTTAtcg
taatattttattttcttagggAGAACCATCATACAACACCACCACGACTa
aaatagaaattatatttttctaagaaaaaaaattgtgcaCACACTATCAA
CACCACTACTTTGTAAAAAGATATGCTTCAATCTATGAAAATACACAATA
ATGAATACGAAAATTGATTTGTACTCTCTTTCTGTACTTTTATACCTCTC
CCTACTATTTATGTAATAGTTAttggacagttgcgagta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00019228TCONS_00019228Clytia hemisphaericatranscript
TCONS_00019229TCONS_00019229Clytia hemisphaericatranscript
TCONS_00019230TCONS_00019230Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00019229-proteinTCONS_00019229-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:334401..341389 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SAXO1PREDICTED: protein FAM154A isoform X1 Homo Sapiens
SAXO2protein FAM154B Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79	3.98	1.2	0.49	87.81	67.42	42.43	43.42	25.66	46.3	21.93	24.3	14.4	11.14	4.5	6.76	5.72	11.01	13.26	13.96	10.31	11.87	4.54	7.73	206.27	120.05	22.42	19.45	3.82	3.92