XLOC_012423 (gene) - C. hemisphaerica

Overview
NameXLOC_012423
Unique NameXLOC_012423
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000406:39913..46601+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012423 ID=XLOC_012423|Name=XLOC_012423|organism=Clytia hemisphaerica|type=gene|length=6689bp|location=Sequence derived from alignment at sc0000406:39913..46601+ (Clytia hemisphaerica)
aaagcTCTTACCACATTTCTCGAATCATTCATCTCAAGTCAATAACAGAT
TTAGGAAAGATGACTTTCTTACGAAGAATATCTCTTTTGCTTCTGCTGTT
CGGTGGTTTTCTTCTTAATGCCGATGCTGATGTAGACGTGGATAGAATAC
GGAACACGTTATCGAGAGTTTTACAAGATCCAAGTATTCCCCCTAATATT
GCAAggtaaaagaaattatttttgattctCCACTAATAGAGCTTCTATTA
TACcccttacatccctgtctcaaaaaTTCGGCGTGATTTTTACACtcaat
tgaaatgaaattttaaaatcaaaatctcaATCTGAAATATAATAAAATGT
ATTTACTTCAACTCAAAAAGTGGGAGCGATTCCCATTCAACGGGAATGGT
tgtcactgggcgaaataagagatttccaatcctgggAATATCTTgaaact
ttggaaatatagaaaagtcattttttcatatttacaaCTGTATATGGAAA
TATAATATTTCATGGTATTTCCAggattgaaacatcatattttcaaaata
tttccaaattttggaaatatgatttttcaatatgaatttcagattttgaa
atctcttatttcgcccagtggtGTTATAGTAATTTCCAATTGGTATCTTT
CCCACTGGGAAGTTTGAActttgattttcatcaatttaCTGTAATTGTAG
CTTTCGAAAATCGATTTGAATTACTTCCTCGATATAATTCAAGGAGTATA
AATAGAGGCAAGACTTCACAGAGTTCATTTTTTATTGGGAATAATTTCTG
GTACCCTTTAGTCCTAGATAGGAAGAAAGTACAATGAGAAAAAGCTAAAT
AAATATGAGCTTGCTTCCTAAGCAAGCTTATTGTAGAGGGTTTTTATCTT
CTCCTCGTAGAGTGCTTcctataataaagagttgacacacTATCtatgtt
tcaaactcagagttccATGGTGCTCAGGCACCAATCATCAGTGATTTTCA
GCTGCTCCGAGTTTGAAACAtagatattgtgtcaactctttattataggA
AGCACTCTACGAGGAGAAGATAAAAACCCTCTACAATAAGCTTGCTTCCT
ATTTTTGTTTCAACGACAATATAGGTACATTGCAATGTTGCATGATggta
ttgattttttgaaatgcttGCCAATCTACAAAAAAAGTAGCAGATGTTAT
ATCTCCAAAGTTTGCAAAACACCAAAGCTGAATGTCAAGGGAGTGCTGGT
TCCATTCCAAACTGAGGTTTGAATTTTGTTATTCAAAATTGTTCCCTGTC
TTTAAATAAAAGCGACGCTTGCTTAAACTTGTAggtaatgacaaaaaata
acacaaaggatttattatacactggatatacaagtaacagacttttgccg
atttctcgtgtactagctatgtccgcagtaaagatattattgttcactct
ccttccctcattaaatgatttttcgaagcatttttattgcatttcttatc
gaaaatcactcatccaattcccaaaaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccggtggaaaaataggcc
aaaaaattgTCCCCGGtaaaaaaataccctacattttcaaccccactggg
aaattgccctatgattctatccccattgaaaattgaatagaaaaaattgg
actccaaaaccatccccactggaatttttgagctggaaacaaaagatttt
ctattcccattgggatttcgatagaaattttcatcccaaaattttcaaac
ttcaacctcaaaaaaaccaccttgccatccaccacgtgcctccaaaggat
tttcataccacagtggagccaagacactcaaatcttatgtatgttaatct
cagctcttctagggacagtcttggaaagatattcccaattgaaaatttcg
tgtcactataagcattttgtctgaatttcttgtccaatgatgtttttctc
acattagatttcacaaatgtatccagcttggaatgctagccttacttgCT
AGCcttacaaactttttttctgcaaatgtacaaaaagaaagagcaaGAGA
ACTTCTTTAAAATAAGACTGAtgataaagatttttaaaaatcagacatct
tcgagccgccatgacagttgtcctttgcgggcaaagctagaacatcaatt
gttttctgaaacaatggaaatacaatgatcgctctccatcgttttatgag
tcatttatccagtgtataataaatctttgatgACACGCAAAAAGCTAACA
GTTAGGTTTATAATCAGTCTCATACTTTGAGCCACTTGCACCAATTTTTC
ATTATACTGGATGTGACACGATGTTTTGTAAGCACTATTTTGATCATAAA
AAGCTAAGCGACAGGAAATGAGTTTGATTTTTAATCTAAGCTTTCGATGT
ATCTCAGACGTCGTCTATTTATATAGCGGATATTTGTATGGAGCTGCTTT
ACCCATAGTCATGGGGTAAAGTCAAGACTCAGACTTTTACGAGAAAGAAA
CACCATACACGATTTTCTATAAGGACATCCAATGTTcataactttttgac
ttttaagccaTAAAATGTACTTAAtatgttctcattttcaccattttctg
tGTTTTTGTCCATGTTCCTAAGAATTTGGATGTGAATCCTCAAAgtctta
aaatgctcttaactttgtACTTAACAAACCGAAAAAATGGAACCCTTCTC
CTCTCGCCTTAGATCTGTAAAAGACCATACAAGATTGTGATTCATCTCCA
GTCCTTTAAAACACCTTGGTATGCCACGCCCAAACTTCGACCAATCACAA
TTAATTTCAGAGACGACCATAGAAACGGGATGTTTAAAATTCACAGCGAT
ACCACTATAAAAGCGCACGTACGATATCTAAGGTTCTTTAATACAGGTAT
GTTTCGTTTGGAAATGTCTTTAACATAGCTCACATAAACATGCTTAATTT
ATTCTTGTAGTGTTCCAACTATCGTTGACCAGGAAAGATCTTCTCAAAGC
CAAGGGTGCCAAATAAGACGAAAAATGCGAACAGTGACAAGATTATAATA
CTAGCCTAAGAAATGAAGATTAAATGGGATCACTTCATAACTAATCCACT
AATCTAGGCTTCAGAAAGAAATGTTCAAAGGCAATCTGCACTATCAAATA
TAtctcttatctgatattccgatggcggattggcggccgctcacgctaaa
gctctaaagggagcgggccaatttcccatcggagaggaatgatagtcggc
ctttggcgtgccgcatcctcagtcgggttcaacagtcCTTGCCCATAAAC
CTagaatatttcggttggacccgccaatccctgagggctgggttaccaga
cctcccgcagcaaaattcttgacgcagtctcgcaaaattccgtaatgtaa
accttccagatgttgaaaattttaccgaccttcagagctttagcgtgtcg
gatgaaaatttcaccatctgggtgccagataaataTATCTCGAACCTAGA
GCAGCCTTTGTGAGCATTACAGCAGAGTCATATAAGAAAAGGATCTTGGT
GCGAATTTACCATTCGCCTGGACGACTTCATACTTGACTTTCTTCGCCAT
AGGGAAGGTGAGGTTCTTGATCAATGGGAAAATAAGATATGACTGCACGA
AACCACGTGGTCCTTACAACTGGTTTCAAAGAggtgagaaaaactttttt
gctcagttttttttatcatgGTTCTGAATACATCTTTTGTGATTGGGTCA
TTTCTTATAATTTCAGCCTGGGAATACAAGTTAATTTGCGCTACACTCTA
GACGTAAACGGAATCctgatattttttgttgataAAGACTTTTTTGAGGT
CGAGttccctgcaaaattttaaaagccaaatcATAAATTAGGTGCTTTAA
TTTACTTGAGGAATATTAAATATTAGCCCTAATCACGcactcaggatcta
aaagctccgCTCAAAAATATTCTATTATGGAAATATGGCTGGAAACAGGG
tattaacctttcaaagccgctaacttttttgaaaaaggccaaaaagttta
tcatttttttctggagatttattctttcaaaggcaatttctcgaccagga
caaacgattcaggtaccaactttggtatcgttggaaagctcttctcaggc
aaattaaggcctatccagatttttcaaacttacctcaattttttatcacc
gtttccacttatcatagcatatcacttcatatatcgaaagaagcgtattg
gagtgtagatcactggaattgctgtgccataattaattttttcacccaaa
aaaagatattaggcaaaaaccaaaaaatgctgacgtcagcaaaacttgtt
ttttgaataactccaatttggcttatggtaaaaacatgaaatttggacca
aagttgcacaccattaaaaggatcattttgaaaaaaaaattttgaaattt
tgctgacgtcagcacttaattgaaaaatttcgtattttgctgatttctgc
tgacgtcggcaaaatttgcaaaaaaaNaagaaacaaaatttttgaatttt
tgctgacgtcagcagttaattgcaaaatttcgtattttgctgatttctgc
tgacgtcagcaaaatttgcaaaaaaaaattatacaaaaatgttcctatta
ttgatatgcaacttttgtccaaatttcatgaatataccataagccaaact
gtctaatatctttttttgggcgaaaaaattaattatggcacagcaattct
agtgatctacactccaatagGCTTCTTTCGATGCATGAAGTGATATccta
tgacaagtggaaacggtgataaaaaattatggtaaaCTTGGACGTGCCAT
AATTTGCCTGagtttctctcagctacaaaaaatagcagattttttttctc
tcaatctcaagtggtcaggagttatgaccaaaagactgtgtatcggtaaa
ataaccttttcaaaacgtatatatacgtatttcGCCTACTAAGGGTatta
aggcggggtcaaaatgcttgcaacgttacaaatcatttctaggagctcat
tttcatttcaaatgaaGGGTATCAACAAGTAGAATAAGATTCAGATGTTT
TCTGATTAAGAAATTTGGCATAATTCGcaaaaaacttagattttgCGTAG
ATagatttttgctattttgatgacgtcataaacatttaAGTcctaataac
ttttgatttaagtatcgaaattaattgaaattcGTCCAAAGATGCACATA
ATTAATGTTTccagaataaaaaaatttgcttatgaaatttgatgacgtca
tcacttttcgactgaaaaaataaaaatgaaatactttaaaatactgacgt
catcataattttaaaaatattttgaaatcttgcTTTTCccgcccgaactt
taaaattttattttaaaaacgaCGAAATacctagactatgctatagtcta
agacgaattcgAATCTCGGGTGACACTGATTGTAATTTAACGTTTACTCA
ACCCTCGATCAATTTCTTCTGTATTCTTCAGGTCAATTGAGTGAACAGGC
CCCTCGTGGTCAATATAACCGAATTTGGTACAAACTTCTTGTTCGATTTG
AACTCAAAACTAAAGCACACAAACACTGGTGGAAATTCTCTTACAAATGT
GCCAAAAACGGGTGTAAAGATTTGGTGAAGAAGAGCGGCACTTTGGGTGG
CCATGCGGTTGCGGGTCCACAGTCATGTAAGAATGATGTTCTGAAATACC
GGAATTACTTGTTGGAAAATCAGAGAAGGCGTTGTCCGGGATGTGTGGAG
CCATGATATACTTATGAGACGCTCAGTTTAGTGACTAAAATGGTAAACGG
TTGGTTTTATTAGAAGACCCAGTAAAATTTTGCCGAACCTGAggattttc
ttaaatttctattgttccaaacaatAGAACTTTTGTTCTGGAGGCCTAAA
TCTGAGGctagtgttcttataaaattgttcttacaaaTAAAATAGCGCGT
AGTTGAAAATCTGTATTTTTTGAATTCTTACAATATCTTTTTGGCGAGGG
AGTAACAATTTTGTGGGGTATTTTATTATTGTTTAGAGCGGTATATTATa
gtaaattaaattttgatatgATAGGTAGTTCTGATTACTGAATGAAATAT
ATCCGAGGAGAAAACAATGATCCAAAACAATTGTCCATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022149TCONS_00022149Clytia hemisphaericatranscript
TCONS_00022150TCONS_00022150Clytia hemisphaericatranscript
TCONS_00022151TCONS_00022151Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022149-proteinTCONS_00022149-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:39913..46601 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37	0.78	0.48	0.04	0.28	0.11	0.07	0.19	0.09	0.05	0.12	0.14	0.21	0.22	0.12	0.07	0.56	0.16	0.14	0	0.92	0.73	13.93	28.98	7.16	18.41	1.51	2.3	1.21	0.71