XLOC_013564 (gene) - C. hemisphaerica

Overview
NameXLOC_013564
Unique NameXLOC_013564
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000478:55191..66162+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013564 ID=XLOC_013564|Name=XLOC_013564|organism=Clytia hemisphaerica|type=gene|length=10972bp|location=Sequence derived from alignment at sc0000478:55191..66162+ (Clytia hemisphaerica)
aaaaaagtttagaaattatctccattatttttaaaatgtaaactgagcaa gccgtagcgaaattaaagatggctgagAAAATAATGATGAAAGTGATGGA GAGagtttcatcaatttttgataatttttaaactgtgacgttaagaggtg ggggtggggggttttcaaattagcgtcaatttgacgttagtcgtgagAAG AATCAATATGTGACTGATCCCTAAattcgcaaaagtaaatgttgtgaatt ttacaatttttcatcctcgcaaaagtttgtacccCTAAAGTagtttaaaa ctttcttcccCTTCTTTGTTATTTGTTGCCACGCAGGGGCCCTGTCTCCT TCTCAAAAATGAAGAATGAGAAGTTTGCGTCAAGAGGAGAGCTAAAACTG TGACTTGTGTTGGGATTTTTAGCTCTGAAGACAAAGCGATATAAGTAGGG AGTCATgtcagtcgaaatttcaaaaaatggaacttCAAAATCAGTCAGGA GTCTTGCATTAGGCTAGATggtactaatcgataaattcgattatcAAAGT AAGCGATAATGATAGAAGTAATTGAACAACCACtcatcgattaacaatcg aatgTCGAGtaccaaaaatgttcttaactttgacaactttgataaccaat tgattacttcgataaccAATCACTATGTATGATATATCTTTAGCTTTATG AAAAACCAATAAACtgacctaaaaccaaagcacaaaaagaatcgaaatat ataataatatataataatacCAAATTAATATATTGACCAAAGTAaacttg gtttcagattattttgacgcACTGCTAATactggaaacatatttgataaa atcgaaggctggaaagtactcaatacaatcgaaggtattcaatatgagCA AAGGTAATCGAAAAGTAATCAAAATGATTGAACAAAGCAGAAATGGttga agaaaatgccataatctgGATTCAAGTGATTAATAATCTGGATTCAAGTG ATTATTCAATCATCGATAAAATCAATAGGTGGTCACTGACCACCTTCGAT TATTATCAATCATTATTGATAACTTCAATCACAATTGAACGTTCGATTAG TACCGCCTGGATTAGGTCTTGCTGATAACTTCCTGAAAGTTaagttaagt tttttttaatcttcaaaataaagaaagtgtgatacctcaccctatTAGAT TtggaccaaatgatctatcacacaagaaaataagaccctgaaaattcCAC TTTGATATCTCaactcaagtagttttgaagatacagcgtctcaaagatag gctactaagcaaaaaattgaccccctaaaaatcagattttgaaagccaat gaatttttatttaagtacattagaaagctgatttacagtggatgtcaaga attttttgtaggaatcagaaaaaaatcaaattaaatctcTAGCATCTACT GTAGAGGGCTTCGAACTTTGCTTACACTGGGTTTGTGCTCTTTTAGCTGC CTACTGATGGTCCTtgtgacttttttgaagcaaacttttggCCTGGAGTG GATTACTGGTGGGATTTTCAGGATTTCTTTCTTTGCGTAACTgtcaaaaa tggccaaaagaTTTATTATGGCAGATCTGGAGccaaattcaagatggcgt aacTTTTTGCAGcgacaacaattttttttgaaactttcagtaaggcttag taggtctagtttataacctcaaaaaatctcagtgggttttggaagtctct taaagatataatcaatagaaaattttcttattaacattgttgttttttcc ctcttaaaatgctaaatcaggtcAACTTAAGGGCTTTAAGGGATTAATTA TtgttgtcaaaatattggttgatcttctccaGTCAACTAATCATATTGGC ATTTGGGGAACAACTGCAAAAACTTTTgggtcatttccatcaacagatga tattttatgacagtttttttatttttaagtacataatatatgtaaaaaaa tgagactggTATCTGGCTTCTCCTACAATTCCAGGGtctatattttcagg aaaagcctcaacctttcacagtttggtgaacattattcttaaatataagc aggttacttcaactaaatgggtttaacagtaattaaatcctattcaaaaa ctttttagacttatcggaaatcctactttgacaataatttgcgctttacg CAGAATTTTCATGATTaactttagactgtccaatatctGTGTACAGTCTT ACTTGTTGATTCTTAAATAACTAAGCAACATTACTAGGGTGATATTTTAT GAGATGTAAACAATGCTTTTTAAATCTTATACTTTCCATAGACTAATTGG ATACCTCTTTTTACTCGTGGGATTGTTAGTAATTTTTCATCTTGGTTTAA TATTTTATGAAATGAAGCAAAGGAATGAAACCTCAGAAAGTTGACTATTT CCAGCGAGTAAACAATTCTgacaattgacaaaattgatgatgatgaattt TTTGGTCGGTCAAATGCCTTGTATTGGGGATTCTAGTCGTGAGCCCTAAG CCTACGCAGGAttgcagcgtttgggtaaacgagacaaaactcgaaaaaag ctggtgttttgataATTTCAGCTGGgatcattttttaaaatttagattAA GTGTATAATCTGCTCAGCAAATTTGTGCACCCACAAAACTGGGGGTCTGT GGGCGATTCCTGGATTTAAGAGGGTAAAGCTTctgaaaaatgttgaatat GTATAAATTTGTTTActtgtaaacattaaaaaagttaaattttggtttta atttAATCTGGGATTGGGTATTTTGGCATGTAACTCCATCTACCCTACAG ATGTACCCCCTTGATGGGTAGCTTTTGCGCTGCATTTAAAAGTTTCAGTt caatgattttcttcttctccttattgatttgattattttttactAATTCT CTTTTACAGGATAAAATATCAAAGATACAAATGATCGATAGTTTTTTAAC TAATTGTAATGGCTGAAAATATAAGGACTTCACTTACTAATTTGGCAAAT CAAGGCCGCTCTCAAAAAGACTCTATTGACAAATATCGAGCACATCTGAA TGAGATCTTGTCCCTCCAGAATCCTGAGCTCACCGACCTACTGAAATCTT TCCTAACAACTGGTATGTACATTTCGTTGTTCTAACTAAATTAGCAAAAT CTTTATCAATGAGAAACCTGTTATAGACTTATTTTAATCAAACGTAATGG ATGATATAGACAACAAAGTTACTTTTACTTTATTTCATGCAAatgctttt ttttaaagttgaaataagttaaaatttattattttttaaatgccATTCAT GGACGAATATACTATTTAAAGTGAGATTTTGATATAATTCAGTTTGATTT AAACCTAATATAGTGGTTATAACAATACTTTGAGCCACTGCAGTTACCCT TCAGGGTAACTTATCATCAAACTTATAATTACATCAATTCCTTAATAATC CTGGTAACCCTTGGAAAGAAAATCTTTATTGATTTTAACCACATCCTATA TAACCCTTGTTTTTCAAGTACTGGATCAGGCTTCGCATATAATTTATAAT AATGATTTATAGGCATAATTTGTGTTGATTTTCAGCCTTACAAGAGAATG TGAGTGTAGTGGTTTCCAGACAACTTGTCTCTGATGTTGCAACGGCATTG AAATCTTTGGATGCTACAACCATCAAAGATGTCTCATATTTTACTCTGaa caatttacagaccagagcaATTTCATTCGAAGAACAGGTAACACAGAAGA TAAACAGTGCTGCCTCGTCAGCTGTTTGCCTCCCGCTGTGATTTATGCAA TGCTGCATCATTAATATCCAGTTAGTTGCTCTTTTAATGTGACGTAGCCT TATGCCCACTCGCACAAAGCATTGGAAACTTTCCATGAAAGATATTATAA GatatttaaaaagatattttcatGCTACAAAGCAAGGAGGTGAGCCTCTA TACTGACAAAGTAGAATGAACAAAAAGAANGTTTTTATGCTAAAAAGCAA GTAGGTGAGCCTCTATACTGACAAAGtagaataaacaaaaagaatttttc caaattcGTGCTTGCACGGCGCCGTAAAGGGGACAAAGTAGTCcctcttt tatttattttatatgtGAGTAAAAACGATAGGAGGATAAAATGTCCATGA ATGACAAGCAGGAAGTGTCAAAATCATTCGGATTCCAGATATTCTAGGTT TAAATGTTTCACAGGACGCTCAAAAGAAATGGATTTCTTCaaactttctc ttttttcttcgATACAGGTGGTCAACATACGACAACATTTAGCTAACGTT CTACAAGAAGAAGGTGATTGGAGGAAATCAGCTGAAGCGCTCGTTGGAAT ACCTCTTGAAACTGGACAAAAGTAAGTTGTTGGTTTGATAACGCAGATAA AGGACAGCAAAGTATTAAATAAGATTGAAATAATATGGGAGAGTTTTTAG CATGGCTGCAGAGTTTTTTATTCTATTCTTGCAACCAAGATAAATGATAC TAATTTGCGTTGTTGAATATTAATAGATAAATCACCACGAAGCTCGATTT TCTTCTAGCTTTCAAACGCGCCACGGCAGCTTTCTTCAGGCTGATTGATA AGCAAGATAGATTTACCCTGTAGCACCTCCCTTTCTTCCAGAACAAAATA CCAGGCGTAAATTTGTTTTAGAAGCAAAGTGAAGTCTAAATTGCTTTCAG ATTAGCCTGTAGAGAGTCACCGGGGTGCGAACGAATGATAGAGGCAATTC ATCCGTTAAGTCGTGATTTTATGTATCGATACTTAACTTTACTATTACCT CTTTGACAGGCAATACAGTAATGCATTCAAGATGGAGATTTATTTGAACA TCGCTCAACTTTATTTGGAAGATGATGATCCAGTGCAAGCTGATATTTAC ATCAATCGTGCATCGCTACTTCAAAAATCGGATGATACCACCGATGCTCT CACCATCAAATATAAAGTATTTTGCTTTTTCGAATAATAATTAACAATGG CTCTTGTTTTACTCCTACATTTATTTCACGAGTAATAATGAAATGGTGTT TGCTGCTTAGAATATTGAATAAAGATTGTTAAATTTTTACAAAGCTTTCA ACTTACTCAAAAATTTAGTCAAACCAAAATTAAATTGATACTTAATAAAG TATACAAAGTTGCTTTTTTACATCGACCTGCAAACTTATAAGTCTTTGTT TTTCACAAatgtttaatttgttttttttacaacGACCCCCCCTCCACTCC GGTTTTTTAACGTCAAAATGAAATCGGGTTCAGTGGAATGATGGAATGAG ATTTGATCAAGTGAACGTTACAAActttaaagtctttttctttCTAGGTG TGTTATGCAAGGGTATTGGATTATCGACGAAAGTTTTTGGAAGCAGCACA ACGCTACAACGAACTTTCATACAACACGCTGATCGCAGATTCTGAACGTA TTAACGCTTTGAAACATTCTCTCATCTGCACCATATTGGCTTCCGCTGgt aatttaccatttttagaAATTCATATTATTTTGTCTGACAAGCTTTTTCT CCTAATCAGAAATAAGGCTCAAAATGGAAGAAAGTAGTCTAAGTTATGTT ATAATTCGAACATTTTTGGAACATTtaaaccctgaaaatttcagaaatta agaacagccctgTCTGAGCTAAAATTTActggattttattaaaaaaaact taacatGTACATATTTTTTCCACCAGTTAAAGGTTCCCTTCAAAGTAATG CCTCATGCAAATAAACCCCTTTTCTTCAATCAGCCCTGGAATATTTGACA GTAAATAGTGATTTCTcaggtttttcatattttgggcATAGACCCAACTT TCTGCTCCCTTGGGCTCTATAATAATTTAAGTTTGGGGCCTGGGGGGCTG TTAGCACAGCTATGAAGTTGTTTTGGTTGTATATCGCAAGTATATATAAC TGCCATGATCGGGTCATTGTATTCTAAACACCCGGGCCGTTTGTCTCGCA CAGTTACATAATCTTTCTGATATCTATAGATAAATTTTGGTATTAAATGT ATGGTATtatgtaatttttattttaatgtatgTTTATTACAGGGAGACAA AGGTCACGAATGTTGGCAACATTATTCAAAGACGAAAGATGTCAACAACT ACCTGCTCACGAGATCTTGGAGAAAATGTgactttctatttttcattgtt ttattcGTAAAATGTGCCTTTTCTACGCAATGTCACAAATgtgctttgtt ttgaaaagatgtgTGGAAATACTATTTACATATATGGAGAAAAAGGTTGT CAAGACTTAGATCATTTTGGAATTTTGCATGACTTCATCTTCTTTCATTT CACTTTAGGTATTTGGATCGTATTATTCGTGGACCTCAATTGAAAGAATT CTCAGACATGTTATTAGACCACCAGAAAGCAACCACGGCTGATGGTAAGA AACAAGAATTCTCATGCCTCTCCTCAAGGAAACTGAAAATCTAGGATATC CATTATCATTTCACTTAGCCTAtggttttttgttttgcttttcagGCTCA ACAATTCTTGACCGTGCAGTTGTGGAACACAACCTATTGGCAATCAGCAA GATatacaaaaacatttcaatagATCAGCTAGGAATTCTTCTAGAAATCT CTCAACNCTTGTtcgtttgttgttgttttttttgcctgaggatTATATCC TTATATTTACCCCTTTTATATATTAAAGTCCATGTAAATAAAAAGCTATA GTATATTCTCCCCTCCACCATTTGCTCAAAAACAAAGGNgactatgttat agtctaagacgaatcactatcaaagaaaaatcccaaagccgaagaaaatt cgcaaacgggttttttttgccgaaaagagtttacagtcggtagagttgct agTCTTAGACTATACGANTCCACCATttgctcaaaaacaaaggaTATGTA TACAAATCATTGCCAGTTTTATATATACTTGCAATTTCGAATTTGTGACT GTCctgttttgtttgataaaaaattttacAGTAACTTTTGcagggaaaaa gtaaaaaagtcccAGCTTGTAAGCTTTGCAGTATGTTGATCTTGCTTTGA TTTGAGCTTGAATTTCTTTCTACCCAAAAAGAGACATTAAAAATGAGGAT GAAATAGgataaaatttaagaaatccCCAGAAATTAGCTTAAAATGGAAA AGTATCAATTAAGAAAAACCTTGAGGCAGatttaaatgacattaaatttc ttatttacaaaaactgataaaaacgtaATTCAATCATGATAAACAAATGA TTCTAAACTGTCTTCCGACAATACTGTATTACAGTCTCGACTAATTCCAG AAGGCTGATGTAAATTTTTCCAAGTCAATCTCAAATTAtatcaggacgtc aagtgaaaaatTGCATATCATGATGACATATTTCAGTAACAGTCTCAATT TATACCAGGGCAttggtgaaatattccaagtcataatctcaaattgtaca caggacgtcaagtgaaataagttataatttcaaattaaaccaggacgtca agtgaaatttGCAAGttattataatctcaaattgtaccaggacgtcagtg aaatattccaagttataatccgaaattaaaccaggacgtcaagtgaaata ttccaagttataatcccaaattaaaccacgacgtgaagtgaaatattcca agttataatctcaaattgtaccagaacgtcaagtgaaataattccaactt ataatcccaaattaaaccacgacgtgaagtgaaatattccaagttataat ctcaaattgtaccagaacgtcaagtgaaataattccaacttataatccca aattaaaccacgacgtgaagtgaaatattccaagttataatctcaaattg taccagaacgtcaagtgaaataattccaacttataatcccaaattaaacc acgacgtgaagtgaaatattgcaatttataatctcaaattataccaggac gtcgtgaaatattgcaagtctCAATCTCAATAATAAACCAGGAtgctgtg ccaaatatttcatttctgtATTGTGCTATCTCTGAATTTCTGATTCTtac ctagaaaatttagaataataatctgataatttttacaGGTACGACTAGGT AACTGAACTTCTCGAGAAAATGTGAAAGTGTTCGAACAAAAAGTATGTTA AAAGCAGTCTTTTAAAGTCCACAATTGACAATATCAATAAGTActttgtt tgacatttttcaaagttgtcaaagaactgctaacaccagatgaaaataac tttttaagagTGGAGATATGAGGGTATTCACATATCTAATGAAACACTGC CTGTGATTCATAGGATTCATAAGAAATATACAAACTGACTTACCTACTTA GTTTCTCTGACTCTGTGTCTTTTTGCTGTATGTAGACttgttgaaaaatc attttaaaacagtATTCTACAGAAGCATACTTGAGGAATAAGTACTCCCT TAAACTAAGTCATCTTGTAgtctcaataaaacaaatgaaccaagaagaaa aattcCATAATGAGCTGGATTTTCACAGTGTGTTGTGTCTTCTTTTTTCC AGTGACCAGCGTGTTTTTGATCGTTTGAACCAAGCTCGGCCTTTAAACTT AGGCGGTTTTCACCACGGAGCGACTAACCAGTCTCACTGGTTAGTCCAAG CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNTAGAAATACTATTTACATATATGGAGAAA AAGGTTGTCAAGACTTAGATCATTTTGGAATTTTGCATGACTTCATCTTC TTTCATTTCACTTTAGGTATTTGGATCGTATTATTCGTGGACCTCAATTG AAAGAATTCTCAGACATGTTATTAGACCACCAGAAAGCAACCACGGCTGA TGGTAAGAAACAAGAATTCTCATGCCTCTCCTCAAGGAAACTGAAAATCT AGGATATCCATTATCATTTCACTTAGCCTAtggttttttgttttgctttt cagGCTCAACAATTCTTGACCGTGCAGTTGTGGAACACAACCTATTGGCA ATCAGCAAGATatacaaaaacatttcaatagATCAGCTAGGAATTCTTCT AGAAATCTCTCAACAAAAGGTAACCATTTGGGTAACCATTTTTCGTGACC TTTGTCTCCCTGTAAACATTACAATAAACCCGAACCCGAAAAGGCTaatt tgaatgaaaagacattctCCTTTATTTTATGCAGGCGGAGAAAATCGTGT CCAGTATGATTTGCAATAATACAATCAAAGGGTTCATTGATCAAGTCGAA GGCTTCGTCTATTTTGAAGGTACCCTACCCATATGTTCTTTTGTATGAAG TTGATTTCGTctctttatacacgtttttgtaTGAGAACAGACTTTATATG AacgaacataaggcttcgatggccaaaataccaAGAATAACATgataaca ttttaagaacattattaggcttaaaactgaaaaagttcaGAACATATAAA AAGCTTcgaaaaactttggacgttcctggtcataaaaaacgtgtttaGTT TGTacacaaattcaacaaaaaccaAGATTTCTTTACAGATGGAGCATATC GTGTCCCTTAGCCGAAAGCCAAGAGATAAAAGATCTACATCATTTAGCTT TCATGAGCACactcatagatttataaagcccgaagggcaagatgtcgtac ttttgctaaaaagtgtgccgtggttaggtaggaaatcctacataggtcac gtgacattacaatagagaCATATCAGCGCTTGACTTTGACCGTATTCTTT TACAGCACAAGAAGTGTTGGAGTCGTTCGATCAGCAAATTCAAAGCGTTT GCTTACATGTCAATGACGTCATGGACAGAATACAAGAACACGTTCCTGAT TGGCAGTTCAACATTGCCGACAAATCCATCATCATGGATACTAGTTAGTC TCAGTTACCCAGATTCAAGTTGTACGAACGGTAACATTCcatgattttga gaaaaaaagataaaaggtaTGCGTCTTTTATTCTTTAGATCGATTCATGT CAGAGGTATTGGTTTTTCGGCTTGTTTTAGAACTACTGGCTCAAGAAtag tttttgttgaaagtagCCTTTCCATTTCAACCATCGTTCGTTCCATTTAT TTTGGATGATCAAAAATTGgtgacattttttttgaaaatgacatGTTATG TTAGAACACTCACTATCGGACATTTTATTACAGAAATACATCACAGCGCT TATAAAAGTTGCTCTTTATTATTTGGTTGAAATTATTATCTTTTGAGTGG ATTATTTTCGCGTGGAATTTTTGCGAATCTAGAATTTCCGCTGGGATTAA ATCGCTTTTTTCTTATAACGTCTTTCATTTACTAAGGGTTTTGTCAAAAA CTAGGATTTTTTGCGAGGACTCATTTTCGCCAATCGGCtagaaaatcgcg aaaattaatccacgcaagGTGCATACCCTATTTTCAACATGATTAATAAT TTAATATGATCTATTTATGGTGAGAAAGGTGTGAAGTTTTAATCATCGGA AATTAAATAAATTACAGATAATTTAAGCTATCGGAATCAGCTCAAAAACG TTGCTGTTGAGAAAACGTCTTATTTTGTATTGAGCGCAGTTTTATTTGAA AGAGTGGAAATACGTGTGAATGCTATGAGCATATGAATGAACTTTGAATT TATATTGACAAAAGggaaatgaaaattatattttatttaaaattgttttg ttttgatagtttcatgatttcattaacctttccagcgcgcaactttttaa attttcacgctgtcagcgcgcaacattttttcagaaaatagacatgttca gttatttgATCATAACTCAANN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00024165TCONS_00024165Clytia hemisphaericatranscript
TCONS_00024166TCONS_00024166Clytia hemisphaericatranscript
TCONS_00024167TCONS_00024167Clytia hemisphaericatranscript
TCONS_00024168TCONS_00024168Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00024168-proteinTCONS_00024168-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:55191..66162 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
COPS4PREDICTED: COP9 signalosome complex subunit 4 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.28 37.63 25.22 22.18 45.3 34.06 42.55 44.18 36.77 37.19 26.91 26.77 18.65 19.27 17.94 19.18 33.4 33.84 13.66 16.86 31.29 31.79 40.56 38.39 26.58 30.72 39.22 27.18 34.08 34.93