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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027185 ID=TCONS_00027185|Name=TCONS_00027185|organism=Clytia hemisphaerica|type=transcript|length=2288bp
AAAAcactaaagaaaaattaagacaaacatttttaatgaattttttttaa
ataattttagcATGGCCAGTGTTAGTAAAAATGAGTTTAGATAAAAAGAC
CATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCTT
CAATTGGCACTCCGTCATGGGTCGAAAATAATTTTGCAGGGACAACAAGG
CTTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAGATCCTCAAAA
TGAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCTGTCACTCTGA
TCTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGTATTGCTTTTA
TTATTATCAATATGGCGCACACACTCAGAGAAAATGGCTCGCATAATTGG
TTTCCTTGCTAtgTTATTCTTTTGTGTGGCTTGTATCGTTTTCCCTTTTG
GCTTTTACATTGAAGAGATTGGTGGACAAGCTTACAAGCTACCTGCGTAT
ACACAAGTTGGATATTCTTATTATTTATTCTGCGGAGCTGTTTCATTGCT
CACTGCTGCTGTAACACTATGTAACTTGGATGTCATTAGAGAAAACTTTA
ATCACAGAATGAATCGTTAATTCTGGAACATTCTTGTTGTTGGGTGTGAA
TCTGGTTATGCACTTTTAGAGGGTTGCTTCATGTCACTGATTTTTATGTG
TTTATTTTAAATATTGTATAGTTGTTATGTAATCGGGATCGAACCATCAA
TGGTACCGTTAATATGCCATGGAAGATTCCAAGCAAAAGTCGATATCTCT
TAATCTATATGCATTGAGGTCATTGAGGAAATGTTCTGTCATTGAATCTG
GATGTCATctgagaaaatattttccattgaAGGAGATGTTGACCCCTGAT
GTAAAAGCCCGTTTCCGAACAAATTTATTAATTTAAACTTTTGCTGAGGT
ATGTGAATTCATGGTAGAAGTTCTAACATTGGGGAAAATGAGATAATCTT
ATTAATTATGGTGACGATTTATCAAAGGTTTCAAAATACTGATGAAAAAG
TCTGCAGACTAAATCCTAATGGGTATAGTATTGATcgtaaaaaaatgaat
ttactaAACTTTCTTGAAATATGCTATAGAAAATGTATATACTAGTATAC
TGGAGTCAGTAGCAAAAATGTGGTACTGATCACTTAATGAGCTCAATGtt
tattcacgataagtgttcaccctttttaaatttcatgtgGAAACCATGTC
AGGTGTAACTGCCTTGAGGGTGGTTTTCACATCGTATTGGGCTTTTTCCA
GAAAgattttttacccccactgttgaggatattgatttttcaaagtatcg
aaccccctggatatcgtattttttacttgaaaagacactttaccccctgg
atatccgctcttGAACAAAagtcgttaaccccctggatatccgatatcct
caacagggggggcaccgactatttctggaaaagcccattaagAAAGAATA
AAAACTTATTATGGACAAACCTAAAAAGAATTAATTGATTATTAAAGATA
ATTTCCGGTTAACTGTTAAAAGACCTCATTAAATTTCTGTTCTTGAATTA
TTGTCTTACATAATAGAACGTTTCTCCCAAGGATCAAATTTTAGATGGGG
TCTCGTGCTCTTATAAaactgttcttataataaaaaaaaaacgtttagac
gATTTCATTCATAGTAGTCAAGATGAGCTAAATTCCCAATTCTTTCAGgt
attttttggggaaatctAGTTTCGACATTACCGTGAATGAAAAAGTCACC
ACCACGACAATTTTTGTGGTTTTTactcaaattatttttaaacgCATTAA
TTATatgtttttgttctttatttgaaactatttacaaaatttttatgtat
aaagttttttgattcaagtttttcatattttttgttgaattctctctttt
gtaaaaaaacttttggttaAGATCGAGGGTTTGAAACTATGAAAGCAATT
ACAACAGTGGAAGACCGTAGGGActtgaaatttatcaaattcaTATAATT
ACGATTTGAAAAAGGCTGGTAAAAAATATTTGCAAACTTTGTTCGTTTTC
CTTTAAATTTgctagtttcttctttttttttcaatttcgttGGATATTTT
TTATTCCTTTAGGAGATTATACTTTAGTTCCTAGACAATAACCACACGAT
TTTTAATAGCACTgtaaaaaatgatttgaattttttaaatacgGTATGTG
TATTTTTAACGcacaaaattattaaaaaaagatttttt Run BLAST on NCBI protein sequence of TCONS_00027185-protein >TCONS_00027185-protein ID=TCONS_00027185-protein|Name=TCONS_00027185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSLDKKTIISSVLLVLSNSLAISSIGTPSWVENNFAGTTRLGLTKICVLF
NGQDPQNEECEALKMPSYWAVTLIFIVIGICLIFLTVLLLLLSIWRTHSE
KMARIIGFLAMLFFCVACIVFPFGFYIEEIGGQAYKLPAYTQVGYSYYLF
CGAVSLLTAAVTLCNLDVIRENFNHRMNR Run BLAST on NCBI transcript from alignment at sc0000608:181447..184793- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027185 ID=TCONS_00027185|Name=TCONS_00027185|organism=Clytia hemisphaerica|type=transcript|length=3347bp|location=Sequence derived from alignment at sc0000608:181447..184793- (Clytia hemisphaerica)
AAAACACTAAAGAAAAATTAAGACAAACATTTTTAATGAATTTTTTTTAA
ATAATTTTAGCATGGCCAGTGTTAGTAAAAATGAGTTTAGATAAAAAGAC
CATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCTT
CAATTGGCACTCCGTCATGGGTCGAAAATAATTTTGCAGGTACGTATTAT
ATTTTTTGCGAATCATTCTTTAAATTAATTTGGGTAGAATTCATGGTCGT
CCCCGAAAAAATCAAAGAGAGAGTGAGTCGAAAGTACACTGCTTTTAATG
TTGATTTTCTAAATTGTAGTGAGTGAATTATAAGATTTATGTCAAAGTAT
TTTATAGGGCTTTACAATATAAAAATACTAATATGAGTGTAATATTTTTA
ATAAATGATAGATGATTCCATCAAAGAGTGATCGATGATCAGGACCAGAG
CTTCATATCATACAGTGTACAAGAAAAAGCAAAATTTGAATTATAGTACT
TTCAGTTTCATCTTTATCGAATCGTCAGCTATCAAATGAAAAATGACAAT
CTGTGACAATTGCTATGATTTTATGTTGAAAAATTTGGATTGTACACTGT
AATATTTCTACAAATCAAATTTGTCTTTAGGGACAACAAGGCTTGGTTTA
ACGAAAATTTGTGTTCTGTTCAATGGACAAGATCCTCAAAATGAAGAATG
CGAAGCACTCAAAATGCCTTCATACTGGGCTGTCACTCTGATCTTCATTG
TAATTGGTATATGTTTGATTTTCTTGACTGTATTGCTTTTATTATTATCA
ATATGGCGCACACACTCAGAGAAAATGGCTCGCATAATTGGTTTCCTTGC
TAGTAAGTTTATTTTTATTTTTTAGAAGGCTAATACGTAATAGACTGTGT
CAGATTGTTGTTTATGAGGCCTCTAGACATCAGCTTGAAGTCAAATGACT
ACTTTTTATTGGCTAATAACCTCATTTAAAAAAGTGTTATTGTTGTATTT
GATATTACAAGGAAGCTGATGAAATTGTTATGAGTTAAAACATACCTCCA
TGCTCTCCATGCTCTATTAATCATACCATGCTGGGATATTATAAACTAAC
TGTCCCTCAAAGGTTGTCATCTCCTAGGATATCTTATGGGTCTCCAGGTG
CAAATGGCAATTACCTTAAGAGAAGAAATTTTGGCGAGAATAAATTTTGG
CAAATGACCCATTTTTGTTTTAATACTTTAACTGAAAAAAAGAGGGAAAA
AGGGTTTTTAGGAGAAATTTGGCGAGAATTTATTTTGGCGAATGACCTAT
AAATTTTAATTTCTTTTCGCCAAAATTTATTCCCTTAAGGTATTTGGGGT
TAGGAGTTCTTCTCTTAAGGTAATCAGCCTCTCAAAATTATCATCTATTG
TCACATCCAAGGATCTCTTTTGAAGAACGACTTCTTTAAACCAATTTCAA
CTTTTCTTTTCATTTTTAAGTGTTATTCTTTTGTGTGGCTTGTATCGTTT
TCCCTTTTGGCTTTTACATTGAAGAGATTGGTGGACAAGCTTACAAGCTA
CCTGCGTATACACAAGTTGGATATTCTTATTATTTATTCTGCGGAGCTGT
TTCATTGCTCACTGCTGCTGTAACACTATGTAACTTGGATGTCATTAGAG
AAAACTTTAATCACAGAATGAATCGTTAATTCTGGAACATTCTTGTTGTT
GGGTGTGAATCTGGTTATGCACTTTTAGAGGGTTGCTTCATGTCACTGAT
TTTTATGTGTTTATTTTAAATATTGTATAGTTGTTATGTAATCGGGATCG
AACCATCAATGGTACCGTTAATATGCCATGGAAGATTCCAAGCAAAAGTC
GATATCTCTTAATCTATATGCATTGAGGTCATTGAGGAAATGTTCTGTCA
TTGAATCTGGATGTCATCTGAGAAAATATTTTCCATTGAAGGAGATGTTG
ACCCCTGATGTAAAAGCCCGTTTCCGAACAAATTTATTAATTTAAACTTT
TGCTGAGGTATGTGAATTCATGGTAGAAGTTCTAACATTGGGGAAAATGA
GATAATCTTATTAATTATGGTGACGATTTATCAAAGGTTTCAAAATACTG
ATGAAAAAGTCTGCAGACTAAATCCTAATGGGTATAGTATTGATCGTAAA
AAAATGAATTTACTAAACTTTCTTGAAATATGCTATAGAAAATGTATATA
CTAGTATACTGGAGTCAGTAGCAAAAATGTGGTACTGATCACTTAATGAG
CTCAATGTTTATTCACGATAAGTGTTCACCCTTTTTAAATTTCATGTGGA
AACCATGTCAGGTGTAACTGCCTTGAGGGTGGTTTTCACATCGTATTGGG
CTTTTTCCAGAAAGATTTTTTACCCCCACTGTTGAGGATATTGATTTTTC
AAAGTATCGAACCCCCTGGATATCGTATTTTTTACTTGAAAAGACACTTT
ACCCCCTGGATATCCGCTCTTGAACAAAAGTCGTTAACCCCCTGGATATC
CGATATCCTCAACAGGGGGGGCACCGACTATTTCTGGAAAAGCCCATTAA
GAAAGAATAAAAACTTATTATGGACAAACCTAAAAAGAATTAATTGATTA
TTAAAGATAATTTCCGGTTAACTGTTAAAAGACCTCATTAAATTTCTGTT
CTTGAATTATTGTCTTACATAATAGAACGTTTCTCCCAAGGATCAAATTT
TAGATGGGGTCTCGTGCTCTTATAAAACTGTTCTTATAATAAAAAAAAAA
CGTTTAGACGATTTCATTCATAGTAGTCAAGATGAGCTAAATTCCCAATT
CTTTCAGGTATTTTTTGGGGAAATCTAGTTTCGACATTACCGTGAATGAA
AAAGTCACCACCACGACAATTTTTGTGGTTTTTACTCAAATTATTTTTAA
ACGCATTAATTATATGTTTTTGTTCTTTATTTGAAACTATTTACAAAATT
TTTATGTATAAAGTTTTTTGATTCAAGTTTTTCATATTTTTTGTTGAATT
CTCTCTTTTGTAAAAAAACTTTTGGTTAAGATCGAGGGTTTGAAACTATG
AAAGCAATTACAACAGTGGAAGACCGTAGGGACTTGAAATTTATCAAATT
CATATAATTACGATTTGAAAAAGGCTGGTAAAAAATATTTGCAAACTTTG
TTCGTTTTCCTTTAAATTTGCTAGTTTCTTCTTTTTTTTTCAATTTCGTT
GGATATTTTTTATTCCTTTAGGAGATTATACTTTAGTTCCTAGACAATAA
CCACACGATTTTTAATAGCACTGTAAAAAATGATTTGAATTTTTTAAATA
CGGTATGTGTATTTTTAACGCACAAAATTATTAAAAAAAGATTTTTT Coding sequence (CDS) from alignment at sc0000608:181447..184793- >TCONS_00027185 ID=TCONS_00027185|Name=TCONS_00027185|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000608:181447..184793- (Clytia hemisphaerica)
TGTTATTCTTTTGTGTGGCTTGTATCGTTTTCCCTTTTGGCTTTTACATT
GAAGAGATTGGTGGACAAGCTTACAAGCTACCTGCGTATACACAAGTTGG
ATATTCTTATTATTTATTCTGCGGAGCTGTTTCATTGCTCACTGCTGCTG
TAACACTATGTAACTTGGATGTCATTAGAGAAAACTTTAATCACAGAATG
AATCGTTAAGGACAACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGTTC
AATGGACAAGATCCTCAAAATGAAGAATGCGAAGCACTCAAAATGCCTTC
ATACTGGGCTGTCACTCTGATCTTCATTGTAATTGGTATATGTTTGATTT
TCTTGACTGTATTGCTTTTATTATTATCAATATGGCGCACACACTCAGAG
AAAATGGCTCGCATAATTGGTTTCCTTGCTAATGAGTTTAGATAAAAAGA
CCATCATTTCATCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCT
TCAATTGGCACTCCGTCATGGGTCGAAAATAATTTTGCAGTGTTATTCTT
TTGTGTGGCTTGTATCGTTTTCCCTTTTGGCTTTTACATTGAAGAGATTG
GTGGACAAGCTTACAAGCTACCTGCGTATACACAAGTTGGATATTCTTAT
TATTTATTCTGCGGAGCTGTTTCATTGCTCACTGCTGCTGTAACACTATG
TAACTTGGATGTCATTAGAGAAAACTTTAATCACAGAATGAATCGTTAAG
GACAACAAGGCTTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAG
ATCCTCAAAATGAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCT
GTCACTCTGATCTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGT
ATTGCTTTTATTATTATCAATATGGCGCACACACTCAGAGAAAATGGCTC
GCATAATTGGTTTCCTTGCTAATGAGTTTAGATAAAAAGACCATCATTTC
ATCTGTCCTGTTGGTTTTATCAAATTCACTGGCCATTTCTTCAATTGGCA
CTCCGTCATGGGTCGAAAATAATTTTGCAGTGTTATTCTTTTGTGTGGCT
TGTATCGTTTTCCCTTTTGGCTTTTACATTGAAGAGATTGGTGGACAAGC
TTACAAGCTACCTGCGTATACACAAGTTGGATATTCTTATTATTTATTCT
GCGGAGCTGTTTCATTGCTCACTGCTGCTGTAACACTATGTAACTTGGAT
GTCATTAGAGAAAACTTTAATCACAGAATGAATCGTTAAGGACAACAAGG
CTTGGTTTAACGAAAATTTGTGTTCTGTTCAATGGACAAGATCCTCAAAA
TGAAGAATGCGAAGCACTCAAAATGCCTTCATACTGGGCTGTCACTCTGA
TCTTCATTGTAATTGGTATATGTTTGATTTTCTTGACTGTATTGCTTTTA
TTATTATCAATATGGCGCACACACTCAGAGAAAATGGCTCGCATAATTGG
TTTCCTTGCTAATGAGTTTAGATAAAAAGACCATCATTTCATCTGTCCTG
TTGGTTTTATCAAATTCACTGGCCATTTCTTCAATTGGCACTCCGTCATG
GGTCGAAAATAATTTTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027185-exon-sc0000608-1575043694:184605..184793 | TCONS_00027185-exon-sc0000608-1575043694:184605..184793 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1575043694:183942..184163 | TCONS_00027185-exon-sc0000608-1575043694:183942..184163 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1575043694:181447..183323 | TCONS_00027185-exon-sc0000608-1575043694:181447..183323 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1510915933:184605..184793 | TCONS_00027185-exon-sc0000608-1510915933:184605..184793 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1510915933:183942..184163 | TCONS_00027185-exon-sc0000608-1510915933:183942..184163 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1510915933:181447..183323 | TCONS_00027185-exon-sc0000608-1510915933:181447..183323 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1491911889:184605..184793 | TCONS_00027185-exon-sc0000608-1491911889:184605..184793 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1491911889:183942..184163 | TCONS_00027185-exon-sc0000608-1491911889:183942..184163 | Clytia hemisphaerica | exon |
| TCONS_00027185-exon-sc0000608-1491911889:181447..183323 | TCONS_00027185-exon-sc0000608-1491911889:181447..183323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:181447..184793 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR019372 | Lipome_HGMIC_fus_partner-like |
| IPR020846 | MFS_dom |
Blast
BLAST of TCONS_00027185 vs. Swiss-Prot (Human)
Match: CP052 (Uncharacterized protein C16orf52 OS=Homo sapiens GN=C16orf52 PE=2 SV=3) HSP 1 Score: 99.7525 bits (247), Expect = 1.939e-23 Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = 3
Query: 87 LDKKTXXXXXXXXXXXXXXXXXXGTPSWVEN-NFAGTTRLGLTKICVLFNGQDPQNEECEALKMPSYWAVTLIFIVIGICXXXXXXXXXXXSIWRTHSEKMARIIGFLAMLFFCVACIVFPFGFYIEEIGGQAYKLPAYTQVGYSYYLF 530
+DK TIIS L + ++ AI+SI P W+ AG +GL + C +G+D C ++P W TL FI++GI + +T LL+ S WR + K AR I F M+ FC+A ++FP GFYI E+GGQ YKLP T VG SY LF
Sbjct: 1 MDKLTIISGCLFLAADIFAIASIANPDWINTGESAGALTVGLVRQCQTIHGRD---RTCIPPRLPPEWVTTLFFIIMGIISLTVTCGLLVASHWRREATKYARWIAFTGMILFCMAALIFPIGFYINEVGGQPYKLPNNTVVGSSYVLF 146
The following BLAST results are available for this feature:
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