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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011719 ID=TCONS_00011719|Name=TCONS_00011719|organism=Clytia hemisphaerica|type=transcript|length=2011bpRun BLAST on NCBI protein sequence of TCONS_00011719-protein >TCONS_00011719-protein ID=TCONS_00011719-protein|Name=TCONS_00011719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp MEKMDIRPASTPKSQKVFYGVGHILNDLCANCWFSYVLLYWTKIVGLSETRun BLAST on NCBI transcript from alignment at sc0000132:42448..46691+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011719 ID=TCONS_00011719|Name=TCONS_00011719|organism=Clytia hemisphaerica|type=transcript|length=4244bp|location=Sequence derived from alignment at sc0000132:42448..46691+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:42448..46691+ >TCONS_00011719 ID=TCONS_00011719|Name=TCONS_00011719|organism=Clytia hemisphaerica|type=CDS|length=13056bp|location=Sequence derived from alignment at sc0000132:42448..46691+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011719 vs. Swiss-Prot (Human)
Match: MFS12 (Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=1 SV=2) HSP 1 Score: 320.472 bits (820), Expect = 7.647e-101 Identity = 190/469 (40.51%), Postives = 270/469 (57.57%), Query Frame = 2
Query: 323 KVFYGVGHILNDLCANCWFSYVLLYWTKIVGLSETDAGLLLLIGQVADAVSTIFIGYACDRTK--FRWYGKRKLWHLIGCACVLVSFPFIFNVCLSCEDAS-ETSKMFYYATFVILFQFGWASTENSHLALIPEIAKRTSDIVQLNAIRSGFFFICGIFVYGLTWILLGGAEGVEVDPSL------------APQFKYLSLVVVAVGFFFVTIFHFGTKEEKYCPPSSHDLESADTNSEGSTTTNKDKIKTWKDWLRDSRFYKTGLLYMCTRLSINIFQSFLVLYLTDALHFQKEAIAYFPLIVLICGVVTSSFMQKITKQIGYQLTYVIGASLMVAGSVWLFVVTKEARQSVYGAVSVVGISISIMLVTALAKTAELIGKNKESGAFVYSCMSFLDKLSTGLVIFAIQVLKPTAENRYQCSDCEWFSKITQSVVPGGFAM--IGFLAMVLLFPSEYTCLRKISNDLKP 1678
++ Y VGH LNDLCA+ WF+Y+LLY + S AGLLLL+GQVAD + T +GY DR YG RK WHL+G CVL+SFPFIF+ CL C A+ E + + YY F+++FQFGWAST+ SHL+LIPE+ + V+L A+R F + I VYG W+LL V+P+ P F+ LSL+VV VG F +FH GT+E + H E + + T + + WK WLR+ FY+ G+LYM TRL +N+ Q+++ +YLT +LH K+ IA PL++ + G ++S M+ I K IG +TY G +++A + W+ + + +VY A ++G + +LVT+LA TA+LIG + SGAFVY MSFLDK++ GL + AIQ L P + C C F V GG + L +LL+P+ LR+ D +P
Sbjct: 22 RLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTPLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAALLYYGPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERR----RPHAEEPGEHTPLLAPATAQ-PLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKFIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFSGLLVILAFAAWV-ALAEGLGVAVYAAAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQSLHP-CPSELCCRACVSFYHWAMVAVTGGVGVAAALCLCSLLLWPTR---LRRWDRDARP 480 The following BLAST results are available for this feature:
BLAST of TCONS_00011719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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